co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:2001294: malonyl-CoA catabolic process	0.00E+00
5	GO:0019253: reductive pentose-phosphate cycle	2.77E-13
6	GO:0006094: gluconeogenesis	9.42E-09
7	GO:0046686: response to cadmium ion	1.11E-07
8	GO:0009658: chloroplast organization	1.90E-07
9	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.16E-07
10	GO:0006096: glycolytic process	2.27E-07
11	GO:0015979: photosynthesis	5.57E-07
12	GO:0006000: fructose metabolic process	8.32E-07
13	GO:0018119: peptidyl-cysteine S-nitrosylation	8.33E-07
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.00E-06
15	GO:0009409: response to cold	1.10E-05
16	GO:0048564: photosystem I assembly	2.62E-05
17	GO:0006002: fructose 6-phosphate metabolic process	3.35E-05
18	GO:0006098: pentose-phosphate shunt	4.19E-05
19	GO:1901349: glucosinolate transport	6.10E-05
20	GO:0090449: phloem glucosinolate loading	6.10E-05
21	GO:0051775: response to redox state	6.10E-05
22	GO:0080093: regulation of photorespiration	6.10E-05
23	GO:0031998: regulation of fatty acid beta-oxidation	6.10E-05
24	GO:0009735: response to cytokinin	6.54E-05
25	GO:0006108: malate metabolic process	9.94E-05
26	GO:0005986: sucrose biosynthetic process	9.94E-05
27	GO:0006753: nucleoside phosphate metabolic process	2.51E-04
28	GO:0071492: cellular response to UV-A	2.51E-04
29	GO:0006696: ergosterol biosynthetic process	2.51E-04
30	GO:0005977: glycogen metabolic process	2.51E-04
31	GO:0006011: UDP-glucose metabolic process	2.51E-04
32	GO:0042631: cellular response to water deprivation	3.11E-04
33	GO:0006020: inositol metabolic process	3.65E-04
34	GO:0006107: oxaloacetate metabolic process	3.65E-04
35	GO:0045727: positive regulation of translation	4.88E-04
36	GO:0006546: glycine catabolic process	4.88E-04
37	GO:0006021: inositol biosynthetic process	4.88E-04
38	GO:0006734: NADH metabolic process	4.88E-04
39	GO:0009902: chloroplast relocation	4.88E-04
40	GO:0006542: glutamine biosynthetic process	4.88E-04
41	GO:0019676: ammonia assimilation cycle	4.88E-04
42	GO:0071486: cellular response to high light intensity	4.88E-04
43	GO:0019464: glycine decarboxylation via glycine cleavage system	4.88E-04
44	GO:0010027: thylakoid membrane organization	5.92E-04
45	GO:0043097: pyrimidine nucleoside salvage	6.19E-04
46	GO:0010236: plastoquinone biosynthetic process	6.19E-04
47	GO:0006097: glyoxylate cycle	6.19E-04
48	GO:0006206: pyrimidine nucleobase metabolic process	7.57E-04
49	GO:0046855: inositol phosphate dephosphorylation	7.57E-04
50	GO:0010942: positive regulation of cell death	7.57E-04
51	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.57E-04
52	GO:0009854: oxidative photosynthetic carbon pathway	9.01E-04
53	GO:0009853: photorespiration	9.58E-04
54	GO:0006099: tricarboxylic acid cycle	9.99E-04
55	GO:0080167: response to karrikin	1.04E-03
56	GO:0010196: nonphotochemical quenching	1.05E-03
57	GO:0015937: coenzyme A biosynthetic process	1.05E-03
58	GO:0009645: response to low light intensity stimulus	1.05E-03
59	GO:0052543: callose deposition in cell wall	1.21E-03
60	GO:0009644: response to high light intensity	1.31E-03
61	GO:0032544: plastid translation	1.38E-03
62	GO:0071482: cellular response to light stimulus	1.38E-03
63	GO:0010206: photosystem II repair	1.55E-03
64	GO:0009051: pentose-phosphate shunt, oxidative branch	1.55E-03
65	GO:0010205: photoinhibition	1.73E-03
66	GO:0006259: DNA metabolic process	1.92E-03
67	GO:0009773: photosynthetic electron transport in photosystem I	2.12E-03
68	GO:0006265: DNA topological change	2.12E-03
69	GO:0009073: aromatic amino acid family biosynthetic process	2.12E-03
70	GO:0043085: positive regulation of catalytic activity	2.12E-03
71	GO:0000272: polysaccharide catabolic process	2.12E-03
72	GO:0006790: sulfur compound metabolic process	2.32E-03
73	GO:0006006: glucose metabolic process	2.52E-03
74	GO:0042343: indole glucosinolate metabolic process	2.96E-03
75	GO:0005985: sucrose metabolic process	2.96E-03
76	GO:0046854: phosphatidylinositol phosphorylation	2.96E-03
77	GO:0006636: unsaturated fatty acid biosynthetic process	3.18E-03
78	GO:0005975: carbohydrate metabolic process	3.21E-03
79	GO:0009416: response to light stimulus	3.48E-03
80	GO:0009611: response to wounding	3.58E-03
81	GO:0009768: photosynthesis, light harvesting in photosystem I	3.65E-03
82	GO:0008299: isoprenoid biosynthetic process	3.65E-03
83	GO:0098542: defense response to other organism	3.89E-03
84	GO:0016226: iron-sulfur cluster assembly	4.15E-03
85	GO:0030433: ubiquitin-dependent ERAD pathway	4.15E-03
86	GO:0019722: calcium-mediated signaling	4.65E-03
87	GO:0016117: carotenoid biosynthetic process	4.92E-03
88	GO:0006662: glycerol ether metabolic process	5.46E-03
89	GO:0007059: chromosome segregation	5.74E-03
90	GO:0009791: post-embryonic development	6.03E-03
91	GO:0019252: starch biosynthetic process	6.03E-03
92	GO:0030163: protein catabolic process	6.91E-03
93	GO:0007267: cell-cell signaling	7.52E-03
94	GO:0055114: oxidation-reduction process	7.62E-03
95	GO:0042742: defense response to bacterium	8.51E-03
96	GO:0045454: cell redox homeostasis	9.00E-03
97	GO:0009817: defense response to fungus, incompatible interaction	9.82E-03
98	GO:0018298: protein-chromophore linkage	9.82E-03
99	GO:0007568: aging	1.09E-02
100	GO:0016051: carbohydrate biosynthetic process	1.16E-02
101	GO:0034599: cellular response to oxidative stress	1.20E-02
102	GO:0008152: metabolic process	1.23E-02
103	GO:0006810: transport	1.39E-02
104	GO:0009744: response to sucrose	1.39E-02
105	GO:0000209: protein polyubiquitination	1.43E-02
106	GO:0006364: rRNA processing	1.71E-02
107	GO:0006857: oligopeptide transport	1.80E-02
108	GO:0055085: transmembrane transport	2.51E-02
109	GO:0009058: biosynthetic process	2.68E-02
110	GO:0009845: seed germination	2.73E-02
111	GO:0007623: circadian rhythm	3.25E-02
112	GO:0006508: proteolysis	3.50E-02
113	GO:0010468: regulation of gene expression	3.68E-02

Rank	GO Term	Adjusted P value
1	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0008974: phosphoribulokinase activity	0.00E+00
5	GO:0008465: glycerate dehydrogenase activity	0.00E+00
6	GO:0051738: xanthophyll binding	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
11	GO:0004618: phosphoglycerate kinase activity	2.16E-07
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.16E-07
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.86E-06
14	GO:0016615: malate dehydrogenase activity	1.00E-05
15	GO:0004332: fructose-bisphosphate aldolase activity	1.00E-05
16	GO:0030060: L-malate dehydrogenase activity	1.44E-05
17	GO:0016168: chlorophyll binding	3.03E-05
18	GO:0004222: metalloendopeptidase activity	4.92E-05
19	GO:0051996: squalene synthase activity	6.10E-05
20	GO:0010945: CoA pyrophosphatase activity	6.10E-05
21	GO:0008746: NAD(P)+ transhydrogenase activity	6.10E-05
22	GO:0090448: glucosinolate:proton symporter activity	6.10E-05
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.48E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	1.48E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	1.48E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.48E-04
27	GO:0008967: phosphoglycolate phosphatase activity	1.48E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.48E-04
29	GO:0010297: heteropolysaccharide binding	1.48E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	1.48E-04
31	GO:0050347: trans-octaprenyltranstransferase activity	1.48E-04
32	GO:0022891: substrate-specific transmembrane transporter activity	2.42E-04
33	GO:0032947: protein complex scaffold	2.51E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	2.51E-04
35	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	2.51E-04
36	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	3.65E-04
37	GO:0017057: 6-phosphogluconolactonase activity	3.65E-04
38	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.65E-04
39	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.65E-04
40	GO:0048038: quinone binding	4.14E-04
41	GO:0008453: alanine-glyoxylate transaminase activity	4.88E-04
42	GO:0004356: glutamate-ammonia ligase activity	6.19E-04
43	GO:0042578: phosphoric ester hydrolase activity	7.57E-04
44	GO:0000210: NAD+ diphosphatase activity	7.57E-04
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.01E-04
46	GO:0004849: uridine kinase activity	9.01E-04
47	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.38E-03
48	GO:0008135: translation factor activity, RNA binding	1.38E-03
49	GO:0051287: NAD binding	1.46E-03
50	GO:0008047: enzyme activator activity	1.92E-03
51	GO:0008266: poly(U) RNA binding	2.74E-03
52	GO:0031409: pigment binding	3.18E-03
53	GO:0051536: iron-sulfur cluster binding	3.42E-03
54	GO:0004176: ATP-dependent peptidase activity	3.89E-03
55	GO:0046872: metal ion binding	4.41E-03
56	GO:0047134: protein-disulfide reductase activity	4.92E-03
57	GO:0016787: hydrolase activity	5.42E-03
58	GO:0008080: N-acetyltransferase activity	5.46E-03
59	GO:0050662: coenzyme binding	5.74E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	5.74E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.91E-03
62	GO:0008237: metallopeptidase activity	7.52E-03
63	GO:0050897: cobalt ion binding	1.09E-02
64	GO:0003746: translation elongation factor activity	1.16E-02
65	GO:0050661: NADP binding	1.27E-02
66	GO:0005198: structural molecule activity	1.51E-02
67	GO:0031625: ubiquitin protein ligase binding	1.84E-02
68	GO:0015035: protein disulfide oxidoreductase activity	2.25E-02
69	GO:0016758: transferase activity, transferring hexosyl groups	2.53E-02
70	GO:0019843: rRNA binding	2.58E-02
71	GO:0005524: ATP binding	3.35E-02
72	GO:0008194: UDP-glycosyltransferase activity	3.52E-02
73	GO:0005506: iron ion binding	3.93E-02
74	GO:0008168: methyltransferase activity	4.31E-02
75	GO:0046982: protein heterodimerization activity	4.37E-02
76	GO:0003824: catalytic activity	4.38E-02
77	GO:0005215: transporter activity	4.41E-02
78	GO:0050660: flavin adenine dinucleotide binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009507: chloroplast	8.15E-29
4	GO:0009570: chloroplast stroma	4.50E-20
5	GO:0048046: apoplast	2.74E-14
6	GO:0009579: thylakoid	6.41E-14
7	GO:0009941: chloroplast envelope	3.20E-12
8	GO:0010319: stromule	5.40E-09
9	GO:0009535: chloroplast thylakoid membrane	3.84E-08
10	GO:0010287: plastoglobule	5.94E-07
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.19E-05
12	GO:0009782: photosystem I antenna complex	6.10E-05
13	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.48E-04
14	GO:0005960: glycine cleavage complex	3.65E-04
15	GO:0009523: photosystem II	3.87E-04
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.88E-04
17	GO:0009517: PSII associated light-harvesting complex II	4.88E-04
18	GO:0016020: membrane	6.82E-04
19	GO:0005777: peroxisome	7.30E-04
20	GO:0009534: chloroplast thylakoid	7.89E-04
21	GO:0031969: chloroplast membrane	1.04E-03
22	GO:0009706: chloroplast inner membrane	2.29E-03
23	GO:0019013: viral nucleocapsid	2.52E-03
24	GO:0030076: light-harvesting complex	2.96E-03
25	GO:0009295: nucleoid	7.52E-03
26	GO:0005778: peroxisomal membrane	7.52E-03
27	GO:0009707: chloroplast outer membrane	9.82E-03
28	GO:0009536: plastid	1.10E-02
29	GO:0031977: thylakoid lumen	1.31E-02
30	GO:0022626: cytosolic ribosome	1.89E-02
31	GO:0005747: mitochondrial respiratory chain complex I	1.97E-02
32	GO:0005623: cell	2.63E-02
33	GO:0005759: mitochondrial matrix	3.04E-02
34	GO:0005829: cytosol	3.34E-02