co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G07390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:0046109: uridine biosynthetic process	0.00E+00
4	GO:0010360: negative regulation of anion channel activity	0.00E+00
5	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0035269: protein O-linked mannosylation	0.00E+00
8	GO:0019348: dolichol metabolic process	0.00E+00
9	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
10	GO:0045185: maintenance of protein location	0.00E+00
11	GO:0006592: ornithine biosynthetic process	0.00E+00
12	GO:0032780: negative regulation of ATPase activity	0.00E+00
13	GO:0006212: uracil catabolic process	2.75E-06
14	GO:0019483: beta-alanine biosynthetic process	2.75E-06
15	GO:0033320: UDP-D-xylose biosynthetic process	4.12E-05
16	GO:0009225: nucleotide-sugar metabolic process	5.00E-05
17	GO:0042732: D-xylose metabolic process	9.62E-05
18	GO:0006014: D-ribose metabolic process	9.62E-05
19	GO:0006506: GPI anchor biosynthetic process	2.22E-04
20	GO:0006481: C-terminal protein methylation	2.43E-04
21	GO:0010036: response to boron-containing substance	2.43E-04
22	GO:1902361: mitochondrial pyruvate transmembrane transport	2.43E-04
23	GO:0032469: endoplasmic reticulum calcium ion homeostasis	2.43E-04
24	GO:0051775: response to redox state	2.43E-04
25	GO:0035266: meristem growth	2.43E-04
26	GO:0007292: female gamete generation	2.43E-04
27	GO:0000302: response to reactive oxygen species	2.61E-04
28	GO:0043562: cellular response to nitrogen levels	2.74E-04
29	GO:0043069: negative regulation of programmed cell death	4.61E-04
30	GO:0080029: cellular response to boron-containing substance levels	5.39E-04
31	GO:0051788: response to misfolded protein	5.39E-04
32	GO:0043066: negative regulation of apoptotic process	5.39E-04
33	GO:0006850: mitochondrial pyruvate transport	5.39E-04
34	GO:0051258: protein polymerization	5.39E-04
35	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.39E-04
36	GO:0060919: auxin influx	5.39E-04
37	GO:0019441: tryptophan catabolic process to kynurenine	5.39E-04
38	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	5.39E-04
39	GO:0015914: phospholipid transport	5.39E-04
40	GO:0046777: protein autophosphorylation	5.78E-04
41	GO:0046686: response to cadmium ion	6.66E-04
42	GO:0006099: tricarboxylic acid cycle	8.53E-04
43	GO:0060968: regulation of gene silencing	8.75E-04
44	GO:0032786: positive regulation of DNA-templated transcription, elongation	8.75E-04
45	GO:0010359: regulation of anion channel activity	8.75E-04
46	GO:0080055: low-affinity nitrate transport	8.75E-04
47	GO:0072661: protein targeting to plasma membrane	8.75E-04
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.25E-03
49	GO:0015700: arsenite transport	1.25E-03
50	GO:0001676: long-chain fatty acid metabolic process	1.25E-03
51	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.25E-03
52	GO:0051259: protein oligomerization	1.25E-03
53	GO:0046713: borate transport	1.25E-03
54	GO:0006542: glutamine biosynthetic process	1.67E-03
55	GO:0018344: protein geranylgeranylation	2.13E-03
56	GO:0098719: sodium ion import across plasma membrane	2.13E-03
57	GO:0007029: endoplasmic reticulum organization	2.13E-03
58	GO:0019252: starch biosynthetic process	2.40E-03
59	GO:0048232: male gamete generation	2.62E-03
60	GO:0043248: proteasome assembly	2.62E-03
61	GO:0045040: protein import into mitochondrial outer membrane	2.62E-03
62	GO:1902456: regulation of stomatal opening	2.62E-03
63	GO:0006796: phosphate-containing compound metabolic process	2.62E-03
64	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.62E-03
65	GO:0010315: auxin efflux	2.62E-03
66	GO:1900425: negative regulation of defense response to bacterium	2.62E-03
67	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.62E-03
68	GO:0048827: phyllome development	2.62E-03
69	GO:0009630: gravitropism	2.75E-03
70	GO:0006694: steroid biosynthetic process	3.15E-03
71	GO:0048280: vesicle fusion with Golgi apparatus	3.15E-03
72	GO:0098655: cation transmembrane transport	3.15E-03
73	GO:0045454: cell redox homeostasis	3.25E-03
74	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.72E-03
75	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.72E-03
76	GO:1902074: response to salt	3.72E-03
77	GO:0050790: regulation of catalytic activity	3.72E-03
78	GO:0009395: phospholipid catabolic process	3.72E-03
79	GO:0042128: nitrate assimilation	4.14E-03
80	GO:0006491: N-glycan processing	4.31E-03
81	GO:0006605: protein targeting	4.31E-03
82	GO:0010078: maintenance of root meristem identity	4.31E-03
83	GO:2000070: regulation of response to water deprivation	4.31E-03
84	GO:0006102: isocitrate metabolic process	4.31E-03
85	GO:0015031: protein transport	4.55E-03
86	GO:0048364: root development	4.77E-03
87	GO:0006526: arginine biosynthetic process	4.93E-03
88	GO:0009699: phenylpropanoid biosynthetic process	4.93E-03
89	GO:0046685: response to arsenic-containing substance	5.59E-03
90	GO:0009821: alkaloid biosynthetic process	5.59E-03
91	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.59E-03
92	GO:0090333: regulation of stomatal closure	5.59E-03
93	GO:0045087: innate immune response	6.13E-03
94	GO:0071577: zinc II ion transmembrane transport	6.27E-03
95	GO:0051453: regulation of intracellular pH	6.27E-03
96	GO:0055114: oxidation-reduction process	6.71E-03
97	GO:0006896: Golgi to vacuole transport	6.99E-03
98	GO:0006325: chromatin organization	6.99E-03
99	GO:0048829: root cap development	6.99E-03
100	GO:0000038: very long-chain fatty acid metabolic process	7.73E-03
101	GO:0043085: positive regulation of catalytic activity	7.73E-03
102	GO:0010015: root morphogenesis	7.73E-03
103	GO:0051707: response to other organism	7.90E-03
104	GO:0006790: sulfur compound metabolic process	8.49E-03
105	GO:0015706: nitrate transport	8.49E-03
106	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.49E-03
107	GO:0000266: mitochondrial fission	8.49E-03
108	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.29E-03
109	GO:0006626: protein targeting to mitochondrion	9.29E-03
110	GO:0006807: nitrogen compound metabolic process	9.29E-03
111	GO:0006094: gluconeogenesis	9.29E-03
112	GO:0006508: proteolysis	9.35E-03
113	GO:0009933: meristem structural organization	1.01E-02
114	GO:0010540: basipetal auxin transport	1.01E-02
115	GO:0006486: protein glycosylation	1.07E-02
116	GO:0010167: response to nitrate	1.10E-02
117	GO:0090351: seedling development	1.10E-02
118	GO:0046854: phosphatidylinositol phosphorylation	1.10E-02
119	GO:0016192: vesicle-mediated transport	1.23E-02
120	GO:0006096: glycolytic process	1.26E-02
121	GO:0048367: shoot system development	1.30E-02
122	GO:0031408: oxylipin biosynthetic process	1.46E-02
123	GO:0006886: intracellular protein transport	1.51E-02
124	GO:0030433: ubiquitin-dependent ERAD pathway	1.56E-02
125	GO:0018105: peptidyl-serine phosphorylation	1.57E-02
126	GO:0006012: galactose metabolic process	1.66E-02
127	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
128	GO:0042147: retrograde transport, endosome to Golgi	1.86E-02
129	GO:0009408: response to heat	1.89E-02
130	GO:0000413: protein peptidyl-prolyl isomerization	1.97E-02
131	GO:0010154: fruit development	2.07E-02
132	GO:0008152: metabolic process	2.14E-02
133	GO:0006814: sodium ion transport	2.18E-02
134	GO:0006623: protein targeting to vacuole	2.29E-02
135	GO:0009749: response to glucose	2.29E-02
136	GO:0002229: defense response to oomycetes	2.41E-02
137	GO:0010193: response to ozone	2.41E-02
138	GO:0006891: intra-Golgi vesicle-mediated transport	2.41E-02
139	GO:0010583: response to cyclopentenone	2.52E-02
140	GO:0006914: autophagy	2.76E-02
141	GO:0010286: heat acclimation	2.88E-02
142	GO:0071805: potassium ion transmembrane transport	2.88E-02
143	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.26E-02
144	GO:0010029: regulation of seed germination	3.26E-02
145	GO:0009607: response to biotic stimulus	3.26E-02
146	GO:0006906: vesicle fusion	3.39E-02
147	GO:0006888: ER to Golgi vesicle-mediated transport	3.52E-02
148	GO:0016311: dephosphorylation	3.65E-02
149	GO:0009738: abscisic acid-activated signaling pathway	3.71E-02
150	GO:0030244: cellulose biosynthetic process	3.78E-02
151	GO:0008219: cell death	3.78E-02
152	GO:0009813: flavonoid biosynthetic process	3.92E-02
153	GO:0010311: lateral root formation	3.92E-02
154	GO:0048767: root hair elongation	3.92E-02
155	GO:0006499: N-terminal protein myristoylation	4.05E-02
156	GO:0035556: intracellular signal transduction	4.13E-02
157	GO:0010119: regulation of stomatal movement	4.19E-02
158	GO:0016051: carbohydrate biosynthetic process	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0019211: phosphatase activator activity	0.00E+00
4	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
5	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
6	GO:0004157: dihydropyrimidinase activity	0.00E+00
7	GO:0008777: acetylornithine deacetylase activity	0.00E+00
8	GO:0042030: ATPase inhibitor activity	0.00E+00
9	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
10	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
11	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
12	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	2.75E-06
13	GO:0005496: steroid binding	6.58E-05
14	GO:0048040: UDP-glucuronate decarboxylase activity	9.62E-05
15	GO:0004747: ribokinase activity	1.32E-04
16	GO:0070403: NAD+ binding	1.32E-04
17	GO:0008865: fructokinase activity	2.22E-04
18	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.43E-04
19	GO:0030544: Hsp70 protein binding	2.43E-04
20	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.43E-04
21	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.43E-04
22	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.43E-04
23	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.94E-04
24	GO:0051213: dioxygenase activity	4.26E-04
25	GO:0004061: arylformamidase activity	5.39E-04
26	GO:0004450: isocitrate dehydrogenase (NADP+) activity	5.39E-04
27	GO:0015105: arsenite transmembrane transporter activity	5.39E-04
28	GO:0005047: signal recognition particle binding	8.75E-04
29	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.75E-04
30	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.75E-04
31	GO:0050833: pyruvate transmembrane transporter activity	8.75E-04
32	GO:0004663: Rab geranylgeranyltransferase activity	8.75E-04
33	GO:0004751: ribose-5-phosphate isomerase activity	8.75E-04
34	GO:0004383: guanylate cyclase activity	8.75E-04
35	GO:0016805: dipeptidase activity	8.75E-04
36	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.75E-04
37	GO:0008430: selenium binding	8.75E-04
38	GO:0004324: ferredoxin-NADP+ reductase activity	8.75E-04
39	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.25E-03
40	GO:0008276: protein methyltransferase activity	1.25E-03
41	GO:0001653: peptide receptor activity	1.25E-03
42	GO:0046715: borate transmembrane transporter activity	1.25E-03
43	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.25E-03
44	GO:0010328: auxin influx transmembrane transporter activity	1.67E-03
45	GO:0000993: RNA polymerase II core binding	1.67E-03
46	GO:0050378: UDP-glucuronate 4-epimerase activity	1.67E-03
47	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.13E-03
48	GO:0004356: glutamate-ammonia ligase activity	2.13E-03
49	GO:0045431: flavonol synthase activity	2.13E-03
50	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.62E-03
51	GO:0036402: proteasome-activating ATPase activity	2.62E-03
52	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.15E-03
53	GO:0004012: phospholipid-translocating ATPase activity	3.15E-03
54	GO:0004559: alpha-mannosidase activity	3.15E-03
55	GO:0051920: peroxiredoxin activity	3.15E-03
56	GO:0003824: catalytic activity	3.41E-03
57	GO:0008235: metalloexopeptidase activity	3.72E-03
58	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.72E-03
59	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.72E-03
60	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.72E-03
61	GO:0008320: protein transmembrane transporter activity	3.72E-03
62	GO:0004674: protein serine/threonine kinase activity	3.95E-03
63	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.14E-03
64	GO:0008565: protein transporter activity	4.20E-03
65	GO:0004034: aldose 1-epimerase activity	4.31E-03
66	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.31E-03
67	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.31E-03
68	GO:0016209: antioxidant activity	4.31E-03
69	GO:0004683: calmodulin-dependent protein kinase activity	4.37E-03
70	GO:0071949: FAD binding	5.59E-03
71	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.59E-03
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.13E-03
73	GO:0004743: pyruvate kinase activity	6.27E-03
74	GO:0045309: protein phosphorylated amino acid binding	6.27E-03
75	GO:0030955: potassium ion binding	6.27E-03
76	GO:0003993: acid phosphatase activity	6.41E-03
77	GO:0000149: SNARE binding	6.69E-03
78	GO:0030234: enzyme regulator activity	6.99E-03
79	GO:0008171: O-methyltransferase activity	6.99E-03
80	GO:0015386: potassium:proton antiporter activity	7.73E-03
81	GO:0005543: phospholipid binding	7.73E-03
82	GO:0019904: protein domain specific binding	7.73E-03
83	GO:0008794: arsenate reductase (glutaredoxin) activity	7.73E-03
84	GO:0004177: aminopeptidase activity	7.73E-03
85	GO:0008559: xenobiotic-transporting ATPase activity	7.73E-03
86	GO:0005484: SNAP receptor activity	7.90E-03
87	GO:0000287: magnesium ion binding	8.56E-03
88	GO:0010329: auxin efflux transmembrane transporter activity	9.29E-03
89	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.29E-03
90	GO:0005262: calcium channel activity	9.29E-03
91	GO:0051287: NAD binding	9.58E-03
92	GO:0031624: ubiquitin conjugating enzyme binding	1.01E-02
93	GO:0017025: TBP-class protein binding	1.10E-02
94	GO:0008234: cysteine-type peptidase activity	1.18E-02
95	GO:0043130: ubiquitin binding	1.27E-02
96	GO:0005385: zinc ion transmembrane transporter activity	1.27E-02
97	GO:0003954: NADH dehydrogenase activity	1.27E-02
98	GO:0008324: cation transmembrane transporter activity	1.37E-02
99	GO:0035251: UDP-glucosyltransferase activity	1.46E-02
100	GO:0008408: 3'-5' exonuclease activity	1.46E-02
101	GO:0015035: protein disulfide oxidoreductase activity	1.57E-02
102	GO:0003727: single-stranded RNA binding	1.76E-02
103	GO:0005507: copper ion binding	1.82E-02
104	GO:0016301: kinase activity	1.88E-02
105	GO:0003924: GTPase activity	1.89E-02
106	GO:0005516: calmodulin binding	1.97E-02
107	GO:0046873: metal ion transmembrane transporter activity	2.07E-02
108	GO:0050662: coenzyme binding	2.18E-02
109	GO:0016853: isomerase activity	2.18E-02
110	GO:0004872: receptor activity	2.29E-02
111	GO:0004197: cysteine-type endopeptidase activity	2.52E-02
112	GO:0015385: sodium:proton antiporter activity	2.64E-02
113	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.64E-02
114	GO:0008237: metallopeptidase activity	2.88E-02
115	GO:0016597: amino acid binding	3.01E-02
116	GO:0015250: water channel activity	3.13E-02
117	GO:0005524: ATP binding	3.46E-02
118	GO:0008236: serine-type peptidase activity	3.65E-02
119	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
120	GO:0015238: drug transmembrane transporter activity	3.92E-02
121	GO:0004601: peroxidase activity	4.07E-02
122	GO:0030145: manganese ion binding	4.19E-02
123	GO:0003746: translation elongation factor activity	4.48E-02
124	GO:0016491: oxidoreductase activity	4.55E-02
125	GO:0050661: NADP binding	4.91E-02
126	GO:0008233: peptidase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	1.55E-08
3	GO:0005783: endoplasmic reticulum	1.37E-07
4	GO:0033185: dolichol-phosphate-mannose synthase complex	2.75E-06
5	GO:0005789: endoplasmic reticulum membrane	6.60E-06
6	GO:0016021: integral component of membrane	1.15E-05
7	GO:0032580: Golgi cisterna membrane	2.25E-05
8	GO:0005829: cytosol	2.35E-05
9	GO:0005774: vacuolar membrane	4.58E-05
10	GO:0005794: Golgi apparatus	6.08E-05
11	GO:0031902: late endosome membrane	1.16E-04
12	GO:0016020: membrane	2.01E-04
13	GO:0045252: oxoglutarate dehydrogenase complex	2.43E-04
14	GO:0032044: DSIF complex	2.43E-04
15	GO:0031304: intrinsic component of mitochondrial inner membrane	5.39E-04
16	GO:0030134: ER to Golgi transport vesicle	5.39E-04
17	GO:0030176: integral component of endoplasmic reticulum membrane	8.68E-04
18	GO:0005782: peroxisomal matrix	8.75E-04
19	GO:0016328: lateral plasma membrane	8.75E-04
20	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.25E-03
21	GO:0005768: endosome	2.30E-03
22	GO:0030140: trans-Golgi network transport vesicle	2.62E-03
23	GO:0031597: cytosolic proteasome complex	3.15E-03
24	GO:0031595: nuclear proteasome complex	3.72E-03
25	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.31E-03
26	GO:0031305: integral component of mitochondrial inner membrane	4.31E-03
27	GO:0012507: ER to Golgi transport vesicle membrane	4.31E-03
28	GO:0045273: respiratory chain complex II	4.31E-03
29	GO:0005773: vacuole	4.78E-03
30	GO:0005742: mitochondrial outer membrane translocase complex	4.93E-03
31	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.93E-03
32	GO:0031901: early endosome membrane	5.59E-03
33	GO:0008540: proteasome regulatory particle, base subcomplex	6.27E-03
34	GO:0005802: trans-Golgi network	6.35E-03
35	GO:0005740: mitochondrial envelope	6.99E-03
36	GO:0030125: clathrin vesicle coat	6.99E-03
37	GO:0031201: SNARE complex	7.28E-03
38	GO:0090404: pollen tube tip	7.73E-03
39	GO:0005737: cytoplasm	8.47E-03
40	GO:0005750: mitochondrial respiratory chain complex III	1.01E-02
41	GO:0005764: lysosome	1.01E-02
42	GO:0000502: proteasome complex	1.07E-02
43	GO:0005777: peroxisome	1.32E-02
44	GO:0005905: clathrin-coated pit	1.46E-02
45	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.76E-02
46	GO:0005770: late endosome	2.07E-02
47	GO:0009504: cell plate	2.29E-02
48	GO:0005778: peroxisomal membrane	2.88E-02
49	GO:0000151: ubiquitin ligase complex	3.78E-02
50	GO:0000325: plant-type vacuole	4.19E-02
51	GO:0009506: plasmodesma	4.37E-02