co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G05410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
2	GO:0080056: petal vascular tissue pattern formation	0.00E+00
3	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
4	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	8.86E-06
5	GO:0042780: tRNA 3'-end processing	4.33E-05
6	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.33E-05
7	GO:0042273: ribosomal large subunit biogenesis	9.27E-05
8	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.85E-04
9	GO:0009094: L-phenylalanine biosynthetic process	1.85E-04
10	GO:0009423: chorismate biosynthetic process	1.85E-04
11	GO:0009086: methionine biosynthetic process	3.67E-04
12	GO:0006995: cellular response to nitrogen starvation	4.07E-04
13	GO:0009073: aromatic amino acid family biosynthetic process	4.48E-04
14	GO:0006913: nucleocytoplasmic transport	4.48E-04
15	GO:0045037: protein import into chloroplast stroma	4.90E-04
16	GO:0010588: cotyledon vascular tissue pattern formation	5.33E-04
17	GO:0006446: regulation of translational initiation	5.76E-04
18	GO:0042254: ribosome biogenesis	5.95E-04
19	GO:0000027: ribosomal large subunit assembly	7.11E-04
20	GO:0010305: leaf vascular tissue pattern formation	1.10E-03
21	GO:0006364: rRNA processing	3.26E-03
22	GO:0048367: shoot system development	3.73E-03
23	GO:0016569: covalent chromatin modification	3.98E-03
24	GO:0006396: RNA processing	4.23E-03
25	GO:0006413: translational initiation	5.75E-03
26	GO:0009617: response to bacterium	6.81E-03
27	GO:0048366: leaf development	9.15E-03
28	GO:0032259: methylation	1.21E-02
29	GO:0048364: root development	1.29E-02
30	GO:0009873: ethylene-activated signaling pathway	1.50E-02
31	GO:0009611: response to wounding	1.90E-02
32	GO:0015031: protein transport	3.68E-02
33	GO:0006810: transport	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0016274: protein-arginine N-methyltransferase activity	8.86E-06
2	GO:0047150: betaine-homocysteine S-methyltransferase activity	8.86E-06
3	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.38E-05
4	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.38E-05
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.33E-05
6	GO:0070181: small ribosomal subunit rRNA binding	4.33E-05
7	GO:0047769: arogenate dehydratase activity	9.27E-05
8	GO:0004664: prephenate dehydratase activity	9.27E-05
9	GO:0008173: RNA methyltransferase activity	2.91E-04
10	GO:0003729: mRNA binding	6.55E-04
11	GO:0016597: amino acid binding	1.55E-03
12	GO:0000166: nucleotide binding	1.80E-03
13	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.92E-03
14	GO:0003676: nucleic acid binding	2.31E-03
15	GO:0005525: GTP binding	2.93E-03
16	GO:0019843: rRNA binding	4.83E-03
17	GO:0003723: RNA binding	5.20E-03
18	GO:0008565: protein transporter activity	5.46E-03
19	GO:0003743: translation initiation factor activity	6.71E-03
20	GO:0008168: methyltransferase activity	7.95E-03
21	GO:0003824: catalytic activity	3.31E-02
22	GO:0005515: protein binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0030687: preribosome, large subunit precursor	8.77E-07
2	GO:0032040: small-subunit processome	4.90E-04
3	GO:0005730: nucleolus	7.68E-04
4	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.51E-04
5	GO:0005622: intracellular	3.16E-03
6	GO:0009706: chloroplast inner membrane	4.15E-03
7	GO:0005623: cell	4.92E-03
8	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.70E-03
9	GO:0022625: cytosolic large ribosomal subunit	9.83E-03
10	GO:0009507: chloroplast	1.41E-02