GO Enrichment Analysis of Co-expressed Genes with
AT4G05090
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0015976: carbon utilization | 2.01E-05 |
| 5 | GO:2000122: negative regulation of stomatal complex development | 2.01E-05 |
| 6 | GO:0010037: response to carbon dioxide | 2.01E-05 |
| 7 | GO:0009645: response to low light intensity stimulus | 9.14E-05 |
| 8 | GO:0010583: response to cyclopentenone | 1.26E-04 |
| 9 | GO:0010442: guard cell morphogenesis | 1.60E-04 |
| 10 | GO:0071370: cellular response to gibberellin stimulus | 1.60E-04 |
| 11 | GO:0009735: response to cytokinin | 1.63E-04 |
| 12 | GO:0010411: xyloglucan metabolic process | 2.43E-04 |
| 13 | GO:0048829: root cap development | 2.55E-04 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 2.97E-04 |
| 15 | GO:2000123: positive regulation of stomatal complex development | 3.65E-04 |
| 16 | GO:0052541: plant-type cell wall cellulose metabolic process | 3.65E-04 |
| 17 | GO:0006695: cholesterol biosynthetic process | 3.65E-04 |
| 18 | GO:0060919: auxin influx | 3.65E-04 |
| 19 | GO:0010207: photosystem II assembly | 4.38E-04 |
| 20 | GO:0006810: transport | 5.05E-04 |
| 21 | GO:0006833: water transport | 5.47E-04 |
| 22 | GO:0010581: regulation of starch biosynthetic process | 5.97E-04 |
| 23 | GO:0006696: ergosterol biosynthetic process | 5.97E-04 |
| 24 | GO:0019344: cysteine biosynthetic process | 6.05E-04 |
| 25 | GO:0003333: amino acid transmembrane transport | 7.30E-04 |
| 26 | GO:0007231: osmosensory signaling pathway | 8.53E-04 |
| 27 | GO:0051016: barbed-end actin filament capping | 8.53E-04 |
| 28 | GO:0009855: determination of bilateral symmetry | 8.53E-04 |
| 29 | GO:0016117: carotenoid biosynthetic process | 1.01E-03 |
| 30 | GO:0042335: cuticle development | 1.09E-03 |
| 31 | GO:0034220: ion transmembrane transport | 1.09E-03 |
| 32 | GO:0019676: ammonia assimilation cycle | 1.13E-03 |
| 33 | GO:0009765: photosynthesis, light harvesting | 1.13E-03 |
| 34 | GO:0006085: acetyl-CoA biosynthetic process | 1.13E-03 |
| 35 | GO:0033500: carbohydrate homeostasis | 1.13E-03 |
| 36 | GO:2000038: regulation of stomatal complex development | 1.13E-03 |
| 37 | GO:0006546: glycine catabolic process | 1.13E-03 |
| 38 | GO:0006542: glutamine biosynthetic process | 1.13E-03 |
| 39 | GO:0016123: xanthophyll biosynthetic process | 1.43E-03 |
| 40 | GO:0010375: stomatal complex patterning | 1.43E-03 |
| 41 | GO:0016120: carotene biosynthetic process | 1.43E-03 |
| 42 | GO:0031365: N-terminal protein amino acid modification | 1.43E-03 |
| 43 | GO:0071554: cell wall organization or biogenesis | 1.44E-03 |
| 44 | GO:0042549: photosystem II stabilization | 1.76E-03 |
| 45 | GO:0010190: cytochrome b6f complex assembly | 1.76E-03 |
| 46 | GO:0006596: polyamine biosynthetic process | 1.76E-03 |
| 47 | GO:0048759: xylem vessel member cell differentiation | 1.76E-03 |
| 48 | GO:0007267: cell-cell signaling | 1.84E-03 |
| 49 | GO:0010555: response to mannitol | 2.11E-03 |
| 50 | GO:0009955: adaxial/abaxial pattern specification | 2.11E-03 |
| 51 | GO:0080060: integument development | 2.11E-03 |
| 52 | GO:0010014: meristem initiation | 2.11E-03 |
| 53 | GO:0042372: phylloquinone biosynthetic process | 2.11E-03 |
| 54 | GO:0009612: response to mechanical stimulus | 2.11E-03 |
| 55 | GO:0009854: oxidative photosynthetic carbon pathway | 2.11E-03 |
| 56 | GO:0042128: nitrate assimilation | 2.30E-03 |
| 57 | GO:0000160: phosphorelay signal transduction system | 2.82E-03 |
| 58 | GO:0007155: cell adhesion | 2.88E-03 |
| 59 | GO:0009642: response to light intensity | 2.88E-03 |
| 60 | GO:0009690: cytokinin metabolic process | 2.88E-03 |
| 61 | GO:0045010: actin nucleation | 2.88E-03 |
| 62 | GO:0010119: regulation of stomatal movement | 3.10E-03 |
| 63 | GO:0006865: amino acid transport | 3.25E-03 |
| 64 | GO:0009932: cell tip growth | 3.29E-03 |
| 65 | GO:0009657: plastid organization | 3.29E-03 |
| 66 | GO:0019430: removal of superoxide radicals | 3.29E-03 |
| 67 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.72E-03 |
| 68 | GO:0033384: geranyl diphosphate biosynthetic process | 3.72E-03 |
| 69 | GO:0006754: ATP biosynthetic process | 3.72E-03 |
| 70 | GO:0006631: fatty acid metabolic process | 4.03E-03 |
| 71 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.17E-03 |
| 72 | GO:0009926: auxin polar transport | 4.37E-03 |
| 73 | GO:0042546: cell wall biogenesis | 4.54E-03 |
| 74 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 4.64E-03 |
| 75 | GO:0006535: cysteine biosynthetic process from serine | 4.64E-03 |
| 76 | GO:0043069: negative regulation of programmed cell death | 4.64E-03 |
| 77 | GO:0000038: very long-chain fatty acid metabolic process | 5.12E-03 |
| 78 | GO:0006816: calcium ion transport | 5.12E-03 |
| 79 | GO:0019684: photosynthesis, light reaction | 5.12E-03 |
| 80 | GO:0006415: translational termination | 5.12E-03 |
| 81 | GO:0010072: primary shoot apical meristem specification | 5.12E-03 |
| 82 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.12E-03 |
| 83 | GO:0043085: positive regulation of catalytic activity | 5.12E-03 |
| 84 | GO:0009409: response to cold | 5.70E-03 |
| 85 | GO:0009736: cytokinin-activated signaling pathway | 5.88E-03 |
| 86 | GO:0050826: response to freezing | 6.14E-03 |
| 87 | GO:0009767: photosynthetic electron transport chain | 6.14E-03 |
| 88 | GO:0030036: actin cytoskeleton organization | 6.14E-03 |
| 89 | GO:0015979: photosynthesis | 6.40E-03 |
| 90 | GO:0010143: cutin biosynthetic process | 6.67E-03 |
| 91 | GO:0010020: chloroplast fission | 6.67E-03 |
| 92 | GO:0045454: cell redox homeostasis | 6.79E-03 |
| 93 | GO:0010167: response to nitrate | 7.22E-03 |
| 94 | GO:0005985: sucrose metabolic process | 7.22E-03 |
| 95 | GO:0070588: calcium ion transmembrane transport | 7.22E-03 |
| 96 | GO:0006071: glycerol metabolic process | 7.79E-03 |
| 97 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.38E-03 |
| 98 | GO:0010026: trichome differentiation | 8.97E-03 |
| 99 | GO:0007017: microtubule-based process | 8.97E-03 |
| 100 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.97E-03 |
| 101 | GO:0061077: chaperone-mediated protein folding | 9.59E-03 |
| 102 | GO:0080092: regulation of pollen tube growth | 1.02E-02 |
| 103 | GO:0009294: DNA mediated transformation | 1.09E-02 |
| 104 | GO:0006284: base-excision repair | 1.15E-02 |
| 105 | GO:0019722: calcium-mediated signaling | 1.15E-02 |
| 106 | GO:0071555: cell wall organization | 1.26E-02 |
| 107 | GO:0042742: defense response to bacterium | 1.26E-02 |
| 108 | GO:0000271: polysaccharide biosynthetic process | 1.29E-02 |
| 109 | GO:0080022: primary root development | 1.29E-02 |
| 110 | GO:0000413: protein peptidyl-prolyl isomerization | 1.29E-02 |
| 111 | GO:0010087: phloem or xylem histogenesis | 1.29E-02 |
| 112 | GO:0006633: fatty acid biosynthetic process | 1.32E-02 |
| 113 | GO:0045489: pectin biosynthetic process | 1.36E-02 |
| 114 | GO:0032502: developmental process | 1.65E-02 |
| 115 | GO:1901657: glycosyl compound metabolic process | 1.73E-02 |
| 116 | GO:0009617: response to bacterium | 1.73E-02 |
| 117 | GO:0055114: oxidation-reduction process | 1.82E-02 |
| 118 | GO:0009826: unidimensional cell growth | 2.17E-02 |
| 119 | GO:0009817: defense response to fungus, incompatible interaction | 2.47E-02 |
| 120 | GO:0018298: protein-chromophore linkage | 2.47E-02 |
| 121 | GO:0055085: transmembrane transport | 2.48E-02 |
| 122 | GO:0010311: lateral root formation | 2.56E-02 |
| 123 | GO:0007568: aging | 2.74E-02 |
| 124 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.89E-02 |
| 125 | GO:0009853: photorespiration | 2.93E-02 |
| 126 | GO:0016051: carbohydrate biosynthetic process | 2.93E-02 |
| 127 | GO:0046777: protein autophosphorylation | 2.98E-02 |
| 128 | GO:0009644: response to high light intensity | 3.71E-02 |
| 129 | GO:0009737: response to abscisic acid | 3.85E-02 |
| 130 | GO:0006629: lipid metabolic process | 4.11E-02 |
| 131 | GO:0042538: hyperosmotic salinity response | 4.12E-02 |
| 132 | GO:0009414: response to water deprivation | 4.29E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 3 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 7 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 8 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0010328: auxin influx transmembrane transporter activity | 2.01E-05 |
| 12 | GO:0051920: peroxiredoxin activity | 6.84E-05 |
| 13 | GO:0016209: antioxidant activity | 1.18E-04 |
| 14 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 1.60E-04 |
| 15 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.60E-04 |
| 16 | GO:0051996: squalene synthase activity | 1.60E-04 |
| 17 | GO:0016768: spermine synthase activity | 1.60E-04 |
| 18 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.64E-04 |
| 19 | GO:0016413: O-acetyltransferase activity | 1.79E-04 |
| 20 | GO:0004047: aminomethyltransferase activity | 3.65E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.65E-04 |
| 22 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.65E-04 |
| 23 | GO:0050017: L-3-cyanoalanine synthase activity | 3.65E-04 |
| 24 | GO:0004089: carbonate dehydratase activity | 3.89E-04 |
| 25 | GO:0070330: aromatase activity | 5.97E-04 |
| 26 | GO:0050734: hydroxycinnamoyltransferase activity | 5.97E-04 |
| 27 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.97E-04 |
| 28 | GO:0003878: ATP citrate synthase activity | 8.53E-04 |
| 29 | GO:0016149: translation release factor activity, codon specific | 8.53E-04 |
| 30 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.13E-03 |
| 31 | GO:0004659: prenyltransferase activity | 1.13E-03 |
| 32 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.43E-03 |
| 33 | GO:0018685: alkane 1-monooxygenase activity | 1.43E-03 |
| 34 | GO:0004356: glutamate-ammonia ligase activity | 1.43E-03 |
| 35 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.44E-03 |
| 36 | GO:0000156: phosphorelay response regulator activity | 1.63E-03 |
| 37 | GO:0016208: AMP binding | 1.76E-03 |
| 38 | GO:0015250: water channel activity | 2.07E-03 |
| 39 | GO:0004124: cysteine synthase activity | 2.11E-03 |
| 40 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.11E-03 |
| 41 | GO:0051753: mannan synthase activity | 2.11E-03 |
| 42 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.11E-03 |
| 43 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.43E-03 |
| 44 | GO:0008235: metalloexopeptidase activity | 2.48E-03 |
| 45 | GO:0004564: beta-fructofuranosidase activity | 2.88E-03 |
| 46 | GO:0003747: translation release factor activity | 3.72E-03 |
| 47 | GO:0004337: geranyltranstransferase activity | 3.72E-03 |
| 48 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.72E-03 |
| 49 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 3.72E-03 |
| 50 | GO:0004575: sucrose alpha-glucosidase activity | 4.17E-03 |
| 51 | GO:0008047: enzyme activator activity | 4.64E-03 |
| 52 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.72E-03 |
| 53 | GO:0015293: symporter activity | 4.90E-03 |
| 54 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.09E-03 |
| 55 | GO:0004161: dimethylallyltranstransferase activity | 5.12E-03 |
| 56 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.12E-03 |
| 57 | GO:0004177: aminopeptidase activity | 5.12E-03 |
| 58 | GO:0031072: heat shock protein binding | 6.14E-03 |
| 59 | GO:0005262: calcium channel activity | 6.14E-03 |
| 60 | GO:0015171: amino acid transmembrane transporter activity | 6.51E-03 |
| 61 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 6.58E-03 |
| 62 | GO:0031409: pigment binding | 7.79E-03 |
| 63 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 7.79E-03 |
| 64 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 7.79E-03 |
| 65 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 7.79E-03 |
| 66 | GO:0030599: pectinesterase activity | 7.88E-03 |
| 67 | GO:0004857: enzyme inhibitor activity | 8.38E-03 |
| 68 | GO:0005528: FK506 binding | 8.38E-03 |
| 69 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 9.59E-03 |
| 70 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.02E-02 |
| 71 | GO:0003756: protein disulfide isomerase activity | 1.15E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.43E-02 |
| 73 | GO:0019901: protein kinase binding | 1.50E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.73E-02 |
| 75 | GO:0051015: actin filament binding | 1.73E-02 |
| 76 | GO:0042802: identical protein binding | 1.85E-02 |
| 77 | GO:0008483: transaminase activity | 1.89E-02 |
| 78 | GO:0005200: structural constituent of cytoskeleton | 1.89E-02 |
| 79 | GO:0016168: chlorophyll binding | 2.13E-02 |
| 80 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.22E-02 |
| 81 | GO:0004601: peroxidase activity | 2.25E-02 |
| 82 | GO:0004683: calmodulin-dependent protein kinase activity | 2.30E-02 |
| 83 | GO:0102483: scopolin beta-glucosidase activity | 2.30E-02 |
| 84 | GO:0016740: transferase activity | 2.36E-02 |
| 85 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.39E-02 |
| 86 | GO:0005507: copper ion binding | 2.86E-02 |
| 87 | GO:0046872: metal ion binding | 2.93E-02 |
| 88 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.02E-02 |
| 89 | GO:0005516: calmodulin binding | 3.07E-02 |
| 90 | GO:0008422: beta-glucosidase activity | 3.12E-02 |
| 91 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.21E-02 |
| 92 | GO:0005515: protein binding | 3.39E-02 |
| 93 | GO:0005198: structural molecule activity | 3.81E-02 |
| 94 | GO:0005509: calcium ion binding | 4.00E-02 |
| 95 | GO:0003924: GTPase activity | 4.11E-02 |
| 96 | GO:0009055: electron carrier activity | 4.40E-02 |
| 97 | GO:0045330: aspartyl esterase activity | 4.66E-02 |
| 98 | GO:0005215: transporter activity | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 9.33E-11 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.92E-10 |
| 4 | GO:0048046: apoplast | 8.06E-10 |
| 5 | GO:0009507: chloroplast | 1.29E-09 |
| 6 | GO:0009941: chloroplast envelope | 3.94E-08 |
| 7 | GO:0009505: plant-type cell wall | 1.13E-05 |
| 8 | GO:0009579: thylakoid | 4.98E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 5.12E-05 |
| 10 | GO:0046658: anchored component of plasma membrane | 7.63E-05 |
| 11 | GO:0031225: anchored component of membrane | 1.04E-04 |
| 12 | GO:0005618: cell wall | 1.30E-04 |
| 13 | GO:0009782: photosystem I antenna complex | 1.60E-04 |
| 14 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.60E-04 |
| 15 | GO:0010319: stromule | 1.64E-04 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.80E-04 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 2.20E-04 |
| 18 | GO:0030095: chloroplast photosystem II | 4.38E-04 |
| 19 | GO:0016020: membrane | 5.51E-04 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 6.66E-04 |
| 21 | GO:0005775: vacuolar lumen | 8.53E-04 |
| 22 | GO:0009346: citrate lyase complex | 8.53E-04 |
| 23 | GO:0019898: extrinsic component of membrane | 1.35E-03 |
| 24 | GO:0000139: Golgi membrane | 1.57E-03 |
| 25 | GO:0045298: tubulin complex | 3.72E-03 |
| 26 | GO:0031977: thylakoid lumen | 4.03E-03 |
| 27 | GO:0009506: plasmodesma | 4.21E-03 |
| 28 | GO:0016324: apical plasma membrane | 4.64E-03 |
| 29 | GO:0005874: microtubule | 5.18E-03 |
| 30 | GO:0031969: chloroplast membrane | 5.41E-03 |
| 31 | GO:0009508: plastid chromosome | 6.14E-03 |
| 32 | GO:0030659: cytoplasmic vesicle membrane | 6.67E-03 |
| 33 | GO:0030076: light-harvesting complex | 7.22E-03 |
| 34 | GO:0005875: microtubule associated complex | 7.79E-03 |
| 35 | GO:0042651: thylakoid membrane | 8.97E-03 |
| 36 | GO:0005576: extracellular region | 9.06E-03 |
| 37 | GO:0009532: plastid stroma | 9.59E-03 |
| 38 | GO:0010287: plastoglobule | 9.93E-03 |
| 39 | GO:0005887: integral component of plasma membrane | 1.31E-02 |
| 40 | GO:0005886: plasma membrane | 1.40E-02 |
| 41 | GO:0009523: photosystem II | 1.50E-02 |
| 42 | GO:0022626: cytosolic ribosome | 1.74E-02 |
| 43 | GO:0009295: nucleoid | 1.89E-02 |
| 44 | GO:0005778: peroxisomal membrane | 1.89E-02 |
| 45 | GO:0030529: intracellular ribonucleoprotein complex | 2.05E-02 |
| 46 | GO:0016021: integral component of membrane | 2.34E-02 |
| 47 | GO:0000325: plant-type vacuole | 2.74E-02 |
| 48 | GO:0031902: late endosome membrane | 3.31E-02 |
| 49 | GO:0005794: Golgi apparatus | 4.66E-02 |