co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0010430: fatty acid omega-oxidation	0.00E+00
4	GO:0071555: cell wall organization	1.41E-05
5	GO:0000271: polysaccharide biosynthetic process	1.71E-05
6	GO:0045489: pectin biosynthetic process	1.94E-05
7	GO:0007267: cell-cell signaling	4.13E-05
8	GO:0016051: carbohydrate biosynthetic process	1.06E-04
9	GO:0006152: purine nucleoside catabolic process	1.93E-04
10	GO:0009629: response to gravity	1.93E-04
11	GO:1903338: regulation of cell wall organization or biogenesis	1.93E-04
12	GO:2000123: positive regulation of stomatal complex development	1.93E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.48E-04
14	GO:0005977: glycogen metabolic process	3.24E-04
15	GO:0006011: UDP-glucose metabolic process	3.24E-04
16	GO:0009855: determination of bilateral symmetry	4.66E-04
17	GO:0009741: response to brassinosteroid	4.83E-04
18	GO:0045727: positive regulation of translation	6.21E-04
19	GO:0006749: glutathione metabolic process	6.21E-04
20	GO:2000038: regulation of stomatal complex development	6.21E-04
21	GO:0006546: glycine catabolic process	6.21E-04
22	GO:0010583: response to cyclopentenone	6.32E-04
23	GO:0010375: stomatal complex patterning	7.86E-04
24	GO:0046785: microtubule polymerization	7.86E-04
25	GO:0016123: xanthophyll biosynthetic process	7.86E-04
26	GO:0010358: leaf shaping	9.59E-04
27	GO:0010942: positive regulation of cell death	9.59E-04
28	GO:0009955: adaxial/abaxial pattern specification	1.14E-03
29	GO:0080060: integument development	1.14E-03
30	GO:0009094: L-phenylalanine biosynthetic process	1.14E-03
31	GO:0010014: meristem initiation	1.14E-03
32	GO:0045926: negative regulation of growth	1.14E-03
33	GO:0017148: negative regulation of translation	1.14E-03
34	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.14E-03
35	GO:0008610: lipid biosynthetic process	1.54E-03
36	GO:0031540: regulation of anthocyanin biosynthetic process	1.54E-03
37	GO:0052543: callose deposition in cell wall	1.54E-03
38	GO:0048193: Golgi vesicle transport	1.76E-03
39	GO:0032544: plastid translation	1.76E-03
40	GO:0006754: ATP biosynthetic process	1.98E-03
41	GO:0016573: histone acetylation	2.22E-03
42	GO:0010192: mucilage biosynthetic process	2.46E-03
43	GO:0000038: very long-chain fatty acid metabolic process	2.71E-03
44	GO:0010072: primary shoot apical meristem specification	2.71E-03
45	GO:0000272: polysaccharide catabolic process	2.71E-03
46	GO:0018119: peptidyl-cysteine S-nitrosylation	2.71E-03
47	GO:0042545: cell wall modification	3.21E-03
48	GO:0009767: photosynthetic electron transport chain	3.24E-03
49	GO:0009742: brassinosteroid mediated signaling pathway	3.50E-03
50	GO:0009833: plant-type primary cell wall biogenesis	4.10E-03
51	GO:0006338: chromatin remodeling	4.40E-03
52	GO:0009944: polarity specification of adaxial/abaxial axis	4.40E-03
53	GO:0007017: microtubule-based process	4.70E-03
54	GO:0080092: regulation of pollen tube growth	5.34E-03
55	GO:0009294: DNA mediated transformation	5.67E-03
56	GO:0045490: pectin catabolic process	5.69E-03
57	GO:0019722: calcium-mediated signaling	6.01E-03
58	GO:0016117: carotenoid biosynthetic process	6.35E-03
59	GO:0042631: cellular response to water deprivation	6.70E-03
60	GO:0042335: cuticle development	6.70E-03
61	GO:0010268: brassinosteroid homeostasis	7.06E-03
62	GO:0007059: chromosome segregation	7.42E-03
63	GO:0016132: brassinosteroid biosynthetic process	8.17E-03
64	GO:0007264: small GTPase mediated signal transduction	8.56E-03
65	GO:0010090: trichome morphogenesis	8.94E-03
66	GO:0016125: sterol metabolic process	9.34E-03
67	GO:0051607: defense response to virus	1.02E-02
68	GO:0016126: sterol biosynthetic process	1.06E-02
69	GO:0010411: xyloglucan metabolic process	1.19E-02
70	GO:0016049: cell growth	1.23E-02
71	GO:0030244: cellulose biosynthetic process	1.27E-02
72	GO:0009813: flavonoid biosynthetic process	1.32E-02
73	GO:0009832: plant-type cell wall biogenesis	1.32E-02
74	GO:0009407: toxin catabolic process	1.37E-02
75	GO:0009867: jasmonic acid mediated signaling pathway	1.51E-02
76	GO:0016042: lipid catabolic process	1.57E-02
77	GO:0009753: response to jasmonic acid	1.73E-02
78	GO:0008283: cell proliferation	1.80E-02
79	GO:0009926: auxin polar transport	1.80E-02
80	GO:0009744: response to sucrose	1.80E-02
81	GO:0042546: cell wall biogenesis	1.86E-02
82	GO:0009636: response to toxic substance	1.96E-02
83	GO:0006364: rRNA processing	2.23E-02
84	GO:0006468: protein phosphorylation	2.25E-02
85	GO:0051603: proteolysis involved in cellular protein catabolic process	2.29E-02
86	GO:0010224: response to UV-B	2.29E-02
87	GO:0005975: carbohydrate metabolic process	2.32E-02
88	GO:0046686: response to cadmium ion	2.40E-02
89	GO:0009553: embryo sac development	2.81E-02
90	GO:0009611: response to wounding	2.93E-02
91	GO:0051726: regulation of cell cycle	2.99E-02
92	GO:0051301: cell division	3.13E-02
93	GO:0006633: fatty acid biosynthetic process	3.96E-02
94	GO:0007623: circadian rhythm	4.23E-02
95	GO:0055114: oxidation-reduction process	4.31E-02
96	GO:0007166: cell surface receptor signaling pathway	4.65E-02
97	GO:0010468: regulation of gene expression	4.80E-02
98	GO:0009617: response to bacterium	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0047974: guanosine deaminase activity	0.00E+00
4	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.78E-06
5	GO:0010313: phytochrome binding	8.09E-05
6	GO:0010012: steroid 22-alpha hydroxylase activity	8.09E-05
7	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	8.09E-05
8	GO:0016757: transferase activity, transferring glycosyl groups	8.19E-05
9	GO:0046593: mandelonitrile lyase activity	1.93E-04
10	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	1.93E-04
11	GO:0010291: carotene beta-ring hydroxylase activity	1.93E-04
12	GO:0010297: heteropolysaccharide binding	1.93E-04
13	GO:0004047: aminomethyltransferase activity	1.93E-04
14	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	3.24E-04
15	GO:0048027: mRNA 5'-UTR binding	4.66E-04
16	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.66E-04
17	GO:0016758: transferase activity, transferring hexosyl groups	4.78E-04
18	GO:0019901: protein kinase binding	5.54E-04
19	GO:0047769: arogenate dehydratase activity	6.21E-04
20	GO:0004664: prephenate dehydratase activity	6.21E-04
21	GO:0016597: amino acid binding	8.00E-04
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.14E-03
23	GO:0016832: aldehyde-lyase activity	1.14E-03
24	GO:0051753: mannan synthase activity	1.14E-03
25	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.98E-03
26	GO:0045330: aspartyl esterase activity	2.58E-03
27	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.71E-03
28	GO:0004650: polygalacturonase activity	3.03E-03
29	GO:0030599: pectinesterase activity	3.12E-03
30	GO:0008083: growth factor activity	3.52E-03
31	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.10E-03
32	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.10E-03
33	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.10E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.24E-03
35	GO:0004857: enzyme inhibitor activity	4.40E-03
36	GO:0004672: protein kinase activity	5.41E-03
37	GO:0016760: cellulose synthase (UDP-forming) activity	5.67E-03
38	GO:0008017: microtubule binding	5.95E-03
39	GO:0050662: coenzyme binding	7.42E-03
40	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.95E-03
41	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.17E-03
42	GO:0004518: nuclease activity	8.56E-03
43	GO:0016759: cellulose synthase activity	9.34E-03
44	GO:0008483: transaminase activity	9.75E-03
45	GO:0005200: structural constituent of cytoskeleton	9.75E-03
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.19E-02
47	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.37E-02
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.41E-02
49	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.51E-02
50	GO:0004364: glutathione transferase activity	1.75E-02
51	GO:0004185: serine-type carboxypeptidase activity	1.80E-02
52	GO:0008289: lipid binding	2.25E-02
53	GO:0003777: microtubule motor activity	2.40E-02
54	GO:0045735: nutrient reservoir activity	2.51E-02
55	GO:0004674: protein serine/threonine kinase activity	3.31E-02
56	GO:0019843: rRNA binding	3.36E-02
57	GO:0016740: transferase activity	3.50E-02
58	GO:0016829: lyase activity	3.56E-02
59	GO:0016787: hydrolase activity	3.56E-02
60	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.02E-02
61	GO:0005525: GTP binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005576: extracellular region	2.92E-05
2	GO:0005794: Golgi apparatus	5.65E-05
3	GO:0009344: nitrite reductase complex [NAD(P)H]	8.09E-05
4	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.93E-04
5	GO:0048046: apoplast	4.53E-04
6	GO:0010319: stromule	7.56E-04
7	GO:0009505: plant-type cell wall	9.55E-04
8	GO:0000139: Golgi membrane	1.09E-03
9	GO:0000123: histone acetyltransferase complex	1.34E-03
10	GO:0045298: tubulin complex	1.98E-03
11	GO:0005618: cell wall	2.01E-03
12	GO:0031225: anchored component of membrane	2.03E-03
13	GO:0055028: cortical microtubule	2.46E-03
14	GO:0016324: apical plasma membrane	2.46E-03
15	GO:0005765: lysosomal membrane	2.71E-03
16	GO:0019013: viral nucleocapsid	3.24E-03
17	GO:0030095: chloroplast photosystem II	3.52E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	3.81E-03
19	GO:0009654: photosystem II oxygen evolving complex	4.70E-03
20	GO:0016021: integral component of membrane	5.43E-03
21	GO:0019898: extrinsic component of membrane	7.79E-03
22	GO:0005874: microtubule	1.05E-02
23	GO:0005819: spindle	1.60E-02
24	GO:0031902: late endosome membrane	1.70E-02
25	GO:0009570: chloroplast stroma	1.70E-02
26	GO:0005886: plasma membrane	2.68E-02
27	GO:0009941: chloroplast envelope	3.10E-02
28	GO:0010287: plastoglobule	3.24E-02
29	GO:0009543: chloroplast thylakoid lumen	3.36E-02
30	GO:0009534: chloroplast thylakoid	3.46E-02
31	GO:0009705: plant-type vacuole membrane	4.23E-02
32	GO:0005802: trans-Golgi network	4.58E-02
33	GO:0005615: extracellular space	4.58E-02