co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0015690: aluminum cation transport	0.00E+00
3	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:0009617: response to bacterium	3.30E-06
6	GO:0009646: response to absence of light	1.40E-05
7	GO:0048448: stamen morphogenesis	6.58E-05
8	GO:0010450: inflorescence meristem growth	6.58E-05
9	GO:0009609: response to symbiotic bacterium	6.58E-05
10	GO:0055081: anion homeostasis	6.58E-05
11	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.59E-04
12	GO:0048833: specification of floral organ number	1.59E-04
13	GO:0019752: carboxylic acid metabolic process	1.59E-04
14	GO:0009626: plant-type hypersensitive response	2.19E-04
15	GO:0010581: regulation of starch biosynthetic process	2.69E-04
16	GO:0008652: cellular amino acid biosynthetic process	2.69E-04
17	GO:0010197: polar nucleus fusion	3.70E-04
18	GO:0043207: response to external biotic stimulus	3.90E-04
19	GO:0009855: determination of bilateral symmetry	3.90E-04
20	GO:0006979: response to oxidative stress	3.98E-04
21	GO:0032502: developmental process	4.86E-04
22	GO:1901141: regulation of lignin biosynthetic process	5.20E-04
23	GO:0009652: thigmotropism	5.20E-04
24	GO:0042273: ribosomal large subunit biogenesis	5.20E-04
25	GO:0009615: response to virus	6.52E-04
26	GO:0031365: N-terminal protein amino acid modification	6.60E-04
27	GO:0010405: arabinogalactan protein metabolic process	8.06E-04
28	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.06E-04
29	GO:0046686: response to cadmium ion	8.61E-04
30	GO:0009088: threonine biosynthetic process	9.59E-04
31	GO:0009423: chorismate biosynthetic process	9.59E-04
32	GO:0009612: response to mechanical stimulus	9.59E-04
33	GO:0009610: response to symbiotic fungus	1.12E-03
34	GO:1900056: negative regulation of leaf senescence	1.12E-03
35	GO:0080186: developmental vegetative growth	1.12E-03
36	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.12E-03
37	GO:0050821: protein stabilization	1.29E-03
38	GO:0031540: regulation of anthocyanin biosynthetic process	1.29E-03
39	GO:0006102: isocitrate metabolic process	1.29E-03
40	GO:0006605: protein targeting	1.29E-03
41	GO:0051707: response to other organism	1.34E-03
42	GO:0009880: embryonic pattern specification	1.47E-03
43	GO:0006607: NLS-bearing protein import into nucleus	1.65E-03
44	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.85E-03
45	GO:0010224: response to UV-B	1.85E-03
46	GO:0043069: negative regulation of programmed cell death	2.05E-03
47	GO:0010162: seed dormancy process	2.05E-03
48	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.05E-03
49	GO:0016485: protein processing	2.26E-03
50	GO:0009089: lysine biosynthetic process via diaminopimelate	2.26E-03
51	GO:0009073: aromatic amino acid family biosynthetic process	2.26E-03
52	GO:0006626: protein targeting to mitochondrion	2.70E-03
53	GO:0009266: response to temperature stimulus	2.93E-03
54	GO:0002237: response to molecule of bacterial origin	2.93E-03
55	GO:0070588: calcium ion transmembrane transport	3.16E-03
56	GO:0046688: response to copper ion	3.16E-03
57	GO:0000162: tryptophan biosynthetic process	3.40E-03
58	GO:0000027: ribosomal large subunit assembly	3.65E-03
59	GO:0009863: salicylic acid mediated signaling pathway	3.65E-03
60	GO:0009944: polarity specification of adaxial/abaxial axis	3.65E-03
61	GO:0006825: copper ion transport	3.90E-03
62	GO:0006334: nucleosome assembly	4.17E-03
63	GO:0007005: mitochondrion organization	4.43E-03
64	GO:0016226: iron-sulfur cluster assembly	4.43E-03
65	GO:0009625: response to insect	4.70E-03
66	GO:0009294: DNA mediated transformation	4.70E-03
67	GO:0009411: response to UV	4.70E-03
68	GO:0070417: cellular response to cold	5.26E-03
69	GO:0006606: protein import into nucleus	5.55E-03
70	GO:0042631: cellular response to water deprivation	5.55E-03
71	GO:0042391: regulation of membrane potential	5.55E-03
72	GO:0009960: endosperm development	5.85E-03
73	GO:0006520: cellular amino acid metabolic process	5.85E-03
74	GO:0006635: fatty acid beta-oxidation	6.76E-03
75	GO:0010193: response to ozone	6.76E-03
76	GO:0000302: response to reactive oxygen species	6.76E-03
77	GO:0006412: translation	7.08E-03
78	GO:0009723: response to ethylene	7.74E-03
79	GO:0010286: heat acclimation	8.06E-03
80	GO:0001666: response to hypoxia	8.74E-03
81	GO:0046777: protein autophosphorylation	8.88E-03
82	GO:0009627: systemic acquired resistance	9.44E-03
83	GO:0042742: defense response to bacterium	9.67E-03
84	GO:0006886: intracellular protein transport	1.03E-02
85	GO:0050832: defense response to fungus	1.04E-02
86	GO:0008219: cell death	1.05E-02
87	GO:0009407: toxin catabolic process	1.13E-02
88	GO:0010119: regulation of stomatal movement	1.17E-02
89	GO:0009408: response to heat	1.23E-02
90	GO:0006099: tricarboxylic acid cycle	1.28E-02
91	GO:0006839: mitochondrial transport	1.36E-02
92	GO:0008283: cell proliferation	1.49E-02
93	GO:0006810: transport	1.57E-02
94	GO:0009636: response to toxic substance	1.62E-02
95	GO:0009965: leaf morphogenesis	1.62E-02
96	GO:0006364: rRNA processing	1.84E-02
97	GO:0006486: protein glycosylation	1.84E-02
98	GO:0051603: proteolysis involved in cellular protein catabolic process	1.88E-02
99	GO:0009620: response to fungus	2.21E-02
100	GO:0016569: covalent chromatin modification	2.26E-02
101	GO:0009553: embryo sac development	2.31E-02
102	GO:0018105: peptidyl-serine phosphorylation	2.41E-02
103	GO:0009793: embryo development ending in seed dormancy	2.79E-02
104	GO:0006457: protein folding	2.83E-02
105	GO:0009845: seed germination	2.93E-02
106	GO:0009790: embryo development	3.09E-02
107	GO:0040008: regulation of growth	3.37E-02
108	GO:0010150: leaf senescence	3.49E-02
109	GO:0009451: RNA modification	3.54E-02
110	GO:0006470: protein dephosphorylation	3.83E-02
111	GO:0042254: ribosome biogenesis	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0080042: ADP-glucose pyrophosphohydrolase activity	6.58E-05
4	GO:0004048: anthranilate phosphoribosyltransferase activity	6.58E-05
5	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	6.58E-05
6	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.59E-04
7	GO:0017110: nucleoside-diphosphatase activity	1.59E-04
8	GO:0016531: copper chaperone activity	2.69E-04
9	GO:0004148: dihydrolipoyl dehydrogenase activity	2.69E-04
10	GO:0004072: aspartate kinase activity	3.90E-04
11	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.90E-04
12	GO:0047631: ADP-ribose diphosphatase activity	6.60E-04
13	GO:0030976: thiamine pyrophosphate binding	8.06E-04
14	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.06E-04
15	GO:0000210: NAD+ diphosphatase activity	8.06E-04
16	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	8.06E-04
17	GO:0004017: adenylate kinase activity	9.59E-04
18	GO:0050897: cobalt ion binding	9.63E-04
19	GO:0016831: carboxy-lyase activity	1.12E-03
20	GO:0008235: metalloexopeptidase activity	1.12E-03
21	GO:0005507: copper ion binding	1.17E-03
22	GO:0005516: calmodulin binding	1.27E-03
23	GO:0003735: structural constituent of ribosome	1.31E-03
24	GO:0051287: NAD binding	1.61E-03
25	GO:0009055: electron carrier activity	2.09E-03
26	GO:0004177: aminopeptidase activity	2.26E-03
27	GO:0008378: galactosyltransferase activity	2.48E-03
28	GO:0008139: nuclear localization sequence binding	2.70E-03
29	GO:0015114: phosphate ion transmembrane transporter activity	2.70E-03
30	GO:0005388: calcium-transporting ATPase activity	2.70E-03
31	GO:0030552: cAMP binding	3.16E-03
32	GO:0030553: cGMP binding	3.16E-03
33	GO:0004407: histone deacetylase activity	3.65E-03
34	GO:0005528: FK506 binding	3.65E-03
35	GO:0005216: ion channel activity	3.90E-03
36	GO:0004298: threonine-type endopeptidase activity	4.17E-03
37	GO:0005249: voltage-gated potassium channel activity	5.55E-03
38	GO:0030551: cyclic nucleotide binding	5.55E-03
39	GO:0046872: metal ion binding	5.74E-03
40	GO:0010181: FMN binding	6.15E-03
41	GO:0050660: flavin adenine dinucleotide binding	7.74E-03
42	GO:0008237: metallopeptidase activity	8.06E-03
43	GO:0008233: peptidase activity	8.16E-03
44	GO:0016597: amino acid binding	8.40E-03
45	GO:0005509: calcium ion binding	8.72E-03
46	GO:0009931: calcium-dependent protein serine/threonine kinase activity	9.44E-03
47	GO:0004683: calmodulin-dependent protein kinase activity	9.79E-03
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.05E-02
49	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.17E-02
50	GO:0042393: histone binding	1.36E-02
51	GO:0004364: glutathione transferase activity	1.45E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	1.57E-02
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.66E-02
54	GO:0031625: ubiquitin protein ligase binding	1.98E-02
55	GO:0005524: ATP binding	1.99E-02
56	GO:0051082: unfolded protein binding	2.36E-02
57	GO:0016746: transferase activity, transferring acyl groups	2.41E-02
58	GO:0016758: transferase activity, transferring hexosyl groups	2.72E-02
59	GO:0030170: pyridoxal phosphate binding	2.99E-02
60	GO:0008565: protein transporter activity	3.15E-02
61	GO:0042802: identical protein binding	4.13E-02
62	GO:0000287: magnesium ion binding	4.69E-02
63	GO:0005215: transporter activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005758: mitochondrial intermembrane space	3.56E-08
2	GO:0005774: vacuolar membrane	4.63E-06
3	GO:0005730: nucleolus	2.96E-05
4	GO:0005773: vacuole	1.32E-04
5	GO:0005901: caveola	1.59E-04
6	GO:0005739: mitochondrion	4.54E-04
7	GO:0005886: plasma membrane	1.05E-03
8	GO:0005829: cytosol	1.29E-03
9	GO:0005740: mitochondrial envelope	2.05E-03
10	GO:0005840: ribosome	2.13E-03
11	GO:0070469: respiratory chain	3.90E-03
12	GO:0005839: proteasome core complex	4.17E-03
13	GO:0005741: mitochondrial outer membrane	4.17E-03
14	GO:0022627: cytosolic small ribosomal subunit	5.73E-03
15	GO:0022625: cytosolic large ribosomal subunit	8.73E-03
16	GO:0000151: ubiquitin ligase complex	1.05E-02
17	GO:0005643: nuclear pore	1.05E-02
18	GO:0005743: mitochondrial inner membrane	1.14E-02
19	GO:0015934: large ribosomal subunit	1.17E-02
20	GO:0048046: apoplast	1.40E-02
21	GO:0005618: cell wall	1.60E-02
22	GO:0005887: integral component of plasma membrane	1.67E-02
23	GO:0000502: proteasome complex	1.84E-02
24	GO:0005635: nuclear envelope	1.93E-02
25	GO:0005747: mitochondrial respiratory chain complex I	2.12E-02
26	GO:0005834: heterotrimeric G-protein complex	2.17E-02
27	GO:0005654: nucleoplasm	2.72E-02
28	GO:0005623: cell	2.82E-02
29	GO:0005759: mitochondrial matrix	3.26E-02
30	GO:0031225: anchored component of membrane	3.41E-02
31	GO:0009705: plant-type vacuole membrane	3.49E-02
32	GO:0009507: chloroplast	3.61E-02
33	GO:0005622: intracellular	3.87E-02
34	GO:0046658: anchored component of plasma membrane	4.26E-02
35	GO:0005737: cytoplasm	4.32E-02