co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0043462: regulation of ATPase activity	0.00E+00
3	GO:0045041: protein import into mitochondrial intermembrane space	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0006457: protein folding	4.65E-17
6	GO:0046686: response to cadmium ion	2.57E-10
7	GO:0009651: response to salt stress	9.64E-10
8	GO:0009408: response to heat	1.32E-09
9	GO:0061077: chaperone-mediated protein folding	3.86E-08
10	GO:0042026: protein refolding	5.47E-08
11	GO:0006458: 'de novo' protein folding	5.47E-08
12	GO:0051131: chaperone-mediated protein complex assembly	1.83E-06
13	GO:0007005: mitochondrion organization	4.61E-06
14	GO:0006412: translation	1.13E-05
15	GO:0009793: embryo development ending in seed dormancy	4.43E-05
16	GO:0090332: stomatal closure	4.74E-05
17	GO:0000494: box C/D snoRNA 3'-end processing	5.79E-05
18	GO:0019510: S-adenosylhomocysteine catabolic process	5.79E-05
19	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.79E-05
20	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.79E-05
21	GO:1990258: histone glutamine methylation	5.79E-05
22	GO:0006407: rRNA export from nucleus	5.79E-05
23	GO:0006820: anion transport	7.94E-05
24	GO:0006626: protein targeting to mitochondrion	9.21E-05
25	GO:0034976: response to endoplasmic reticulum stress	1.35E-04
26	GO:0033353: S-adenosylmethionine cycle	1.41E-04
27	GO:0000027: ribosomal large subunit assembly	1.52E-04
28	GO:0010187: negative regulation of seed germination	1.52E-04
29	GO:0042256: mature ribosome assembly	2.40E-04
30	GO:0008652: cellular amino acid biosynthetic process	2.40E-04
31	GO:0055074: calcium ion homeostasis	2.40E-04
32	GO:0006954: inflammatory response	2.40E-04
33	GO:1902626: assembly of large subunit precursor of preribosome	2.40E-04
34	GO:0006986: response to unfolded protein	3.49E-04
35	GO:0051085: chaperone mediated protein folding requiring cofactor	3.49E-04
36	GO:0072334: UDP-galactose transmembrane transport	3.49E-04
37	GO:0006346: methylation-dependent chromatin silencing	4.66E-04
38	GO:0033356: UDP-L-arabinose metabolic process	4.66E-04
39	GO:0009615: response to virus	5.54E-04
40	GO:0031167: rRNA methylation	5.92E-04
41	GO:0042254: ribosome biogenesis	7.52E-04
42	GO:0016444: somatic cell DNA recombination	8.63E-04
43	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.63E-04
44	GO:0009423: chorismate biosynthetic process	8.63E-04
45	GO:0071669: plant-type cell wall organization or biogenesis	1.01E-03
46	GO:0000028: ribosomal small subunit assembly	1.16E-03
47	GO:0050821: protein stabilization	1.16E-03
48	GO:0030968: endoplasmic reticulum unfolded protein response	1.32E-03
49	GO:0001510: RNA methylation	1.32E-03
50	GO:0006189: 'de novo' IMP biosynthetic process	1.48E-03
51	GO:0098656: anion transmembrane transport	1.48E-03
52	GO:0006364: rRNA processing	1.52E-03
53	GO:0016441: posttranscriptional gene silencing	1.83E-03
54	GO:0010162: seed dormancy process	1.83E-03
55	GO:0009073: aromatic amino acid family biosynthetic process	2.02E-03
56	GO:0009553: embryo sac development	2.08E-03
57	GO:0010075: regulation of meristem growth	2.41E-03
58	GO:0009934: regulation of meristem structural organization	2.62E-03
59	GO:0048467: gynoecium development	2.62E-03
60	GO:0009735: response to cytokinin	2.85E-03
61	GO:0009555: pollen development	3.19E-03
62	GO:0030150: protein import into mitochondrial matrix	3.26E-03
63	GO:0009944: polarity specification of adaxial/abaxial axis	3.26E-03
64	GO:0098542: defense response to other organism	3.72E-03
65	GO:0006334: nucleosome assembly	3.72E-03
66	GO:0030433: ubiquitin-dependent ERAD pathway	3.95E-03
67	GO:0006730: one-carbon metabolic process	3.95E-03
68	GO:0009294: DNA mediated transformation	4.20E-03
69	GO:0009306: protein secretion	4.44E-03
70	GO:0008033: tRNA processing	4.95E-03
71	GO:0010197: polar nucleus fusion	5.21E-03
72	GO:0048868: pollen tube development	5.21E-03
73	GO:0080156: mitochondrial mRNA modification	6.02E-03
74	GO:0009567: double fertilization forming a zygote and endosperm	6.88E-03
75	GO:0010286: heat acclimation	7.18E-03
76	GO:0009911: positive regulation of flower development	7.78E-03
77	GO:0009816: defense response to bacterium, incompatible interaction	8.08E-03
78	GO:0048573: photoperiodism, flowering	8.71E-03
79	GO:0016049: cell growth	9.03E-03
80	GO:0030244: cellulose biosynthetic process	9.36E-03
81	GO:0010311: lateral root formation	9.69E-03
82	GO:0009832: plant-type cell wall biogenesis	9.69E-03
83	GO:0006811: ion transport	1.00E-02
84	GO:0010043: response to zinc ion	1.04E-02
85	GO:0048527: lateral root development	1.04E-02
86	GO:0000724: double-strand break repair via homologous recombination	1.07E-02
87	GO:0048364: root development	1.08E-02
88	GO:0009409: response to cold	1.15E-02
89	GO:0006839: mitochondrial transport	1.21E-02
90	GO:0008283: cell proliferation	1.32E-02
91	GO:0048367: shoot system development	1.88E-02
92	GO:0016569: covalent chromatin modification	2.01E-02
93	GO:0009624: response to nematode	2.10E-02
94	GO:0055085: transmembrane transport	2.34E-02
95	GO:0009451: RNA modification	3.15E-02
96	GO:0009617: response to bacterium	3.51E-02
97	GO:0009414: response to water deprivation	3.65E-02
98	GO:0042742: defense response to bacterium	3.73E-02
99	GO:0006979: response to oxidative stress	3.76E-02
100	GO:0006970: response to osmotic stress	4.45E-02
101	GO:0009723: response to ethylene	4.68E-02
102	GO:0015031: protein transport	4.73E-02
103	GO:0048366: leaf development	4.74E-02
104	GO:0080167: response to karrikin	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0051082: unfolded protein binding	1.83E-22
4	GO:0003735: structural constituent of ribosome	2.31E-07
5	GO:0044183: protein binding involved in protein folding	7.36E-07
6	GO:0002020: protease binding	5.95E-06
7	GO:0005524: ATP binding	7.39E-06
8	GO:0005507: copper ion binding	1.47E-05
9	GO:0015288: porin activity	2.41E-05
10	GO:0008308: voltage-gated anion channel activity	3.09E-05
11	GO:0003746: translation elongation factor activity	5.50E-05
12	GO:1990259: histone-glutamine methyltransferase activity	5.79E-05
13	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	5.79E-05
14	GO:0004013: adenosylhomocysteinase activity	5.79E-05
15	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	5.79E-05
16	GO:0031072: heat shock protein binding	9.21E-05
17	GO:0052691: UDP-arabinopyranose mutase activity	1.41E-04
18	GO:0008649: rRNA methyltransferase activity	2.40E-04
19	GO:0070180: large ribosomal subunit rRNA binding	2.40E-04
20	GO:0005460: UDP-glucose transmembrane transporter activity	3.49E-04
21	GO:0019201: nucleotide kinase activity	3.49E-04
22	GO:0016866: intramolecular transferase activity	4.66E-04
23	GO:0005459: UDP-galactose transmembrane transporter activity	5.92E-04
24	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.16E-04
25	GO:0004017: adenylate kinase activity	8.63E-04
26	GO:0030515: snoRNA binding	1.01E-03
27	GO:0008135: translation factor activity, RNA binding	1.32E-03
28	GO:0008559: xenobiotic-transporting ATPase activity	2.02E-03
29	GO:0004129: cytochrome-c oxidase activity	2.02E-03
30	GO:0015114: phosphate ion transmembrane transporter activity	2.41E-03
31	GO:0015266: protein channel activity	2.41E-03
32	GO:0003729: mRNA binding	2.81E-03
33	GO:0003723: RNA binding	3.14E-03
34	GO:0004407: histone deacetylase activity	3.26E-03
35	GO:0051087: chaperone binding	3.49E-03
36	GO:0016760: cellulose synthase (UDP-forming) activity	4.20E-03
37	GO:0003756: protein disulfide isomerase activity	4.44E-03
38	GO:0030246: carbohydrate binding	4.64E-03
39	GO:0016853: isomerase activity	5.48E-03
40	GO:0010181: FMN binding	5.48E-03
41	GO:0005509: calcium ion binding	7.04E-03
42	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.71E-03
43	GO:0003697: single-stranded DNA binding	1.11E-02
44	GO:0005515: protein binding	1.21E-02
45	GO:0042393: histone binding	1.21E-02
46	GO:0051287: NAD binding	1.51E-02
47	GO:0016887: ATPase activity	1.61E-02
48	GO:0016298: lipase activity	1.67E-02
49	GO:0005525: GTP binding	3.04E-02
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.67E-02
51	GO:0016788: hydrolase activity, acting on ester bonds	4.28E-02
52	GO:0003682: chromatin binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0005774: vacuolar membrane	2.60E-20
2	GO:0022626: cytosolic ribosome	1.40E-11
3	GO:0009506: plasmodesma	2.00E-10
4	GO:0005739: mitochondrion	3.07E-10
5	GO:0005730: nucleolus	3.97E-10
6	GO:0005829: cytosol	2.76E-09
7	GO:0005788: endoplasmic reticulum lumen	7.29E-09
8	GO:0005773: vacuole	1.41E-07
9	GO:0022625: cytosolic large ribosomal subunit	3.49E-07
10	GO:0005783: endoplasmic reticulum	5.46E-07
11	GO:0046930: pore complex	3.09E-05
12	GO:0005742: mitochondrial outer membrane translocase complex	3.09E-05
13	GO:0005618: cell wall	3.17E-05
14	GO:0000138: Golgi trans cisterna	5.79E-05
15	GO:0030686: 90S preribosome	5.79E-05
16	GO:0005886: plasma membrane	6.62E-05
17	GO:0016020: membrane	1.80E-04
18	GO:0005741: mitochondrial outer membrane	1.87E-04
19	GO:0005840: ribosome	3.12E-04
20	GO:0005759: mitochondrial matrix	3.76E-04
21	GO:0009507: chloroplast	4.94E-04
22	GO:0048046: apoplast	6.99E-04
23	GO:0031428: box C/D snoRNP complex	7.24E-04
24	GO:0030173: integral component of Golgi membrane	8.63E-04
25	GO:0016363: nuclear matrix	8.63E-04
26	GO:0005737: cytoplasm	1.40E-03
27	GO:0005743: mitochondrial inner membrane	1.41E-03
28	GO:0015030: Cajal body	1.65E-03
29	GO:0005747: mitochondrial respiratory chain complex I	1.85E-03
30	GO:0032040: small-subunit processome	2.21E-03
31	GO:0005795: Golgi stack	2.82E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	2.82E-03
33	GO:0005758: mitochondrial intermembrane space	3.26E-03
34	GO:0015935: small ribosomal subunit	3.72E-03
35	GO:0022627: cytosolic small ribosomal subunit	4.85E-03
36	GO:0016592: mediator complex	6.31E-03
37	GO:0015934: large ribosomal subunit	1.04E-02
38	GO:0009505: plant-type cell wall	1.04E-02
39	GO:0000325: plant-type vacuole	1.04E-02
40	GO:0005794: Golgi apparatus	1.58E-02
41	GO:0005635: nuclear envelope	1.71E-02
42	GO:0009570: chloroplast stroma	2.62E-02
43	GO:0009536: plastid	4.57E-02