co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0090701: specification of plant organ identity	0.00E+00
3	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0048449: floral organ formation	0.00E+00
8	GO:0009661: chromoplast organization	0.00E+00
9	GO:0016120: carotene biosynthetic process	1.24E-05
10	GO:0015979: photosynthesis	3.97E-05
11	GO:0050821: protein stabilization	4.79E-05
12	GO:0015995: chlorophyll biosynthetic process	7.85E-05
13	GO:0006824: cobalt ion transport	8.96E-05
14	GO:0000476: maturation of 4.5S rRNA	8.96E-05
15	GO:0000967: rRNA 5'-end processing	8.96E-05
16	GO:0009688: abscisic acid biosynthetic process	1.10E-04
17	GO:0010114: response to red light	1.86E-04
18	GO:0016122: xanthophyll metabolic process	2.12E-04
19	GO:0071712: ER-associated misfolded protein catabolic process	2.12E-04
20	GO:0034470: ncRNA processing	2.12E-04
21	GO:0009915: phloem sucrose loading	2.12E-04
22	GO:0032527: protein exit from endoplasmic reticulum	2.12E-04
23	GO:0055073: cadmium ion homeostasis	2.12E-04
24	GO:0042548: regulation of photosynthesis, light reaction	2.12E-04
25	GO:0034755: iron ion transmembrane transport	2.12E-04
26	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.12E-04
27	GO:1904143: positive regulation of carotenoid biosynthetic process	2.12E-04
28	GO:0005977: glycogen metabolic process	3.54E-04
29	GO:0032940: secretion by cell	3.54E-04
30	GO:0051639: actin filament network formation	5.10E-04
31	GO:0071786: endoplasmic reticulum tubular network organization	5.10E-04
32	GO:0019252: starch biosynthetic process	6.33E-04
33	GO:0008654: phospholipid biosynthetic process	6.33E-04
34	GO:0055114: oxidation-reduction process	6.61E-04
35	GO:0051764: actin crosslink formation	6.78E-04
36	GO:0006661: phosphatidylinositol biosynthetic process	6.78E-04
37	GO:0009765: photosynthesis, light harvesting	6.78E-04
38	GO:0071585: detoxification of cadmium ion	6.78E-04
39	GO:0042938: dipeptide transport	6.78E-04
40	GO:0010021: amylopectin biosynthetic process	6.78E-04
41	GO:0016123: xanthophyll biosynthetic process	8.59E-04
42	GO:0010117: photoprotection	8.59E-04
43	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.05E-03
44	GO:0006655: phosphatidylglycerol biosynthetic process	1.05E-03
45	GO:0009643: photosynthetic acclimation	1.05E-03
46	GO:0071470: cellular response to osmotic stress	1.25E-03
47	GO:0010189: vitamin E biosynthetic process	1.25E-03
48	GO:0080186: developmental vegetative growth	1.46E-03
49	GO:0009769: photosynthesis, light harvesting in photosystem II	1.46E-03
50	GO:0009645: response to low light intensity stimulus	1.46E-03
51	GO:0034599: cellular response to oxidative stress	1.63E-03
52	GO:0005978: glycogen biosynthetic process	1.69E-03
53	GO:0009642: response to light intensity	1.69E-03
54	GO:0009657: plastid organization	1.93E-03
55	GO:0048574: long-day photoperiodism, flowering	1.93E-03
56	GO:0009640: photomorphogenesis	2.00E-03
57	GO:0048507: meristem development	2.18E-03
58	GO:0010206: photosystem II repair	2.18E-03
59	GO:0046916: cellular transition metal ion homeostasis	2.18E-03
60	GO:0042761: very long-chain fatty acid biosynthetic process	2.43E-03
61	GO:0045454: cell redox homeostasis	2.47E-03
62	GO:0010629: negative regulation of gene expression	2.70E-03
63	GO:0030148: sphingolipid biosynthetic process	2.98E-03
64	GO:0009773: photosynthetic electron transport in photosystem I	2.98E-03
65	GO:0015770: sucrose transport	2.98E-03
66	GO:0043085: positive regulation of catalytic activity	2.98E-03
67	GO:0016024: CDP-diacylglycerol biosynthetic process	3.26E-03
68	GO:0015706: nitrate transport	3.26E-03
69	GO:0016925: protein sumoylation	3.26E-03
70	GO:0006094: gluconeogenesis	3.56E-03
71	GO:0010207: photosystem II assembly	3.86E-03
72	GO:0005985: sucrose metabolic process	4.18E-03
73	GO:0034976: response to endoplasmic reticulum stress	4.50E-03
74	GO:0006636: unsaturated fatty acid biosynthetic process	4.50E-03
75	GO:0051017: actin filament bundle assembly	4.83E-03
76	GO:0006289: nucleotide-excision repair	4.83E-03
77	GO:0009768: photosynthesis, light harvesting in photosystem I	5.17E-03
78	GO:0009269: response to desiccation	5.52E-03
79	GO:0007623: circadian rhythm	6.52E-03
80	GO:0016117: carotenoid biosynthetic process	6.99E-03
81	GO:0070417: cellular response to cold	6.99E-03
82	GO:0010182: sugar mediated signaling pathway	7.77E-03
83	GO:0010305: leaf vascular tissue pattern formation	7.77E-03
84	GO:0006662: glycerol ether metabolic process	7.77E-03
85	GO:0010193: response to ozone	8.99E-03
86	GO:0016311: dephosphorylation	1.36E-02
87	GO:0044550: secondary metabolite biosynthetic process	1.36E-02
88	GO:0018298: protein-chromophore linkage	1.41E-02
89	GO:0010218: response to far red light	1.51E-02
90	GO:0007568: aging	1.56E-02
91	GO:0009910: negative regulation of flower development	1.56E-02
92	GO:0009637: response to blue light	1.66E-02
93	GO:0030001: metal ion transport	1.82E-02
94	GO:0006629: lipid metabolic process	1.86E-02
95	GO:0006631: fatty acid metabolic process	1.88E-02
96	GO:0009644: response to high light intensity	2.10E-02
97	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.28E-02
98	GO:0006812: cation transport	2.34E-02
99	GO:0010224: response to UV-B	2.52E-02
100	GO:0006857: oligopeptide transport	2.58E-02
101	GO:0006417: regulation of translation	2.65E-02
102	GO:0009909: regulation of flower development	2.65E-02
103	GO:0005975: carbohydrate metabolic process	2.76E-02
104	GO:0006096: glycolytic process	2.77E-02
105	GO:0009624: response to nematode	3.16E-02
106	GO:0006396: RNA processing	3.23E-02
107	GO:0009416: response to light stimulus	3.29E-02
108	GO:0009790: embryo development	4.14E-02
109	GO:0006413: translational initiation	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
6	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
7	GO:0004462: lactoylglutathione lyase activity	1.89E-05
8	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	8.96E-05
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	8.96E-05
10	GO:0052631: sphingolipid delta-8 desaturase activity	8.96E-05
11	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	8.96E-05
12	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.12E-04
13	GO:0016868: intramolecular transferase activity, phosphotransferases	2.12E-04
14	GO:0019172: glyoxalase III activity	2.12E-04
15	GO:0019156: isoamylase activity	2.12E-04
16	GO:0004180: carboxypeptidase activity	3.54E-04
17	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.54E-04
18	GO:0016805: dipeptidase activity	3.54E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.10E-04
20	GO:0019789: SUMO transferase activity	5.10E-04
21	GO:0042936: dipeptide transporter activity	6.78E-04
22	GO:0070628: proteasome binding	6.78E-04
23	GO:0008878: glucose-1-phosphate adenylyltransferase activity	6.78E-04
24	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	6.78E-04
25	GO:0051538: 3 iron, 4 sulfur cluster binding	8.59E-04
26	GO:0004605: phosphatidate cytidylyltransferase activity	1.05E-03
27	GO:0004332: fructose-bisphosphate aldolase activity	1.05E-03
28	GO:0031593: polyubiquitin binding	1.05E-03
29	GO:0004556: alpha-amylase activity	1.05E-03
30	GO:0004602: glutathione peroxidase activity	1.25E-03
31	GO:0008506: sucrose:proton symporter activity	1.46E-03
32	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.93E-03
33	GO:0046914: transition metal ion binding	1.93E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	2.16E-03
35	GO:0071949: FAD binding	2.18E-03
36	GO:0005381: iron ion transmembrane transporter activity	2.43E-03
37	GO:0008047: enzyme activator activity	2.70E-03
38	GO:0008515: sucrose transmembrane transporter activity	2.98E-03
39	GO:0004022: alcohol dehydrogenase (NAD) activity	3.56E-03
40	GO:0016874: ligase activity	3.57E-03
41	GO:0015035: protein disulfide oxidoreductase activity	3.90E-03
42	GO:0005215: transporter activity	4.35E-03
43	GO:0031409: pigment binding	4.50E-03
44	GO:0043130: ubiquitin binding	4.83E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.86E-03
46	GO:0016829: lyase activity	5.12E-03
47	GO:0003727: single-stranded RNA binding	6.61E-03
48	GO:0003756: protein disulfide isomerase activity	6.61E-03
49	GO:0047134: protein-disulfide reductase activity	6.99E-03
50	GO:0046872: metal ion binding	7.05E-03
51	GO:0003743: translation initiation factor activity	7.62E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	8.17E-03
53	GO:0019901: protein kinase binding	8.58E-03
54	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.85E-03
55	GO:0051015: actin filament binding	9.85E-03
56	GO:0003684: damaged DNA binding	1.03E-02
57	GO:0016168: chlorophyll binding	1.21E-02
58	GO:0003993: acid phosphatase activity	1.72E-02
59	GO:0043621: protein self-association	2.10E-02
60	GO:0016298: lipase activity	2.52E-02
61	GO:0004672: protein kinase activity	2.65E-02
62	GO:0003779: actin binding	3.10E-02
63	GO:0004252: serine-type endopeptidase activity	4.00E-02
64	GO:0015144: carbohydrate transmembrane transporter activity	4.22E-02
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.44E-02
66	GO:0015297: antiporter activity	4.51E-02
67	GO:0005351: sugar:proton symporter activity	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	2.97E-14
4	GO:0009535: chloroplast thylakoid membrane	1.46E-11
5	GO:0009534: chloroplast thylakoid	8.73E-10
6	GO:0009941: chloroplast envelope	1.84E-08
7	GO:0009570: chloroplast stroma	1.02E-06
8	GO:0009517: PSII associated light-harvesting complex II	7.45E-06
9	GO:0031969: chloroplast membrane	2.93E-05
10	GO:0009579: thylakoid	4.44E-05
11	GO:0010287: plastoglobule	4.81E-05
12	GO:0009543: chloroplast thylakoid lumen	5.34E-05
13	GO:0030093: chloroplast photosystem I	2.12E-04
14	GO:0042651: thylakoid membrane	3.07E-04
15	GO:0009509: chromoplast	3.54E-04
16	GO:0032432: actin filament bundle	5.10E-04
17	GO:0036513: Derlin-1 retrotranslocation complex	5.10E-04
18	GO:0071782: endoplasmic reticulum tubular network	5.10E-04
19	GO:0009522: photosystem I	5.92E-04
20	GO:0005783: endoplasmic reticulum	8.07E-04
21	GO:0009538: photosystem I reaction center	1.69E-03
22	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.69E-03
23	GO:0005789: endoplasmic reticulum membrane	1.72E-03
24	GO:0031977: thylakoid lumen	1.84E-03
25	GO:0005884: actin filament	2.98E-03
26	GO:0009706: chloroplast inner membrane	3.79E-03
27	GO:0030095: chloroplast photosystem II	3.86E-03
28	GO:0030076: light-harvesting complex	4.18E-03
29	GO:0009523: photosystem II	8.58E-03
30	GO:0016021: integral component of membrane	1.91E-02
31	GO:0005623: cell	3.78E-02