co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905499: trichome papilla formation	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0042335: cuticle development	1.18E-05
7	GO:0009773: photosynthetic electron transport in photosystem I	2.89E-05
8	GO:0010037: response to carbon dioxide	5.05E-05
9	GO:0015976: carbon utilization	5.05E-05
10	GO:2000122: negative regulation of stomatal complex development	5.05E-05
11	GO:0015979: photosynthesis	1.76E-04
12	GO:0016117: carotenoid biosynthetic process	2.00E-04
13	GO:0006869: lipid transport	2.41E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	2.75E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.75E-04
16	GO:0010362: negative regulation of anion channel activity by blue light	2.75E-04
17	GO:0010442: guard cell morphogenesis	2.75E-04
18	GO:0032544: plastid translation	3.27E-04
19	GO:0009658: chloroplast organization	4.78E-04
20	GO:2000123: positive regulation of stomatal complex development	6.04E-04
21	GO:0010270: photosystem II oxygen evolving complex assembly	6.04E-04
22	GO:0052541: plant-type cell wall cellulose metabolic process	6.04E-04
23	GO:0006695: cholesterol biosynthetic process	6.04E-04
24	GO:0015786: UDP-glucose transport	6.04E-04
25	GO:0018119: peptidyl-cysteine S-nitrosylation	6.30E-04
26	GO:0006816: calcium ion transport	6.30E-04
27	GO:0006415: translational termination	6.30E-04
28	GO:0018298: protein-chromophore linkage	7.45E-04
29	GO:0010207: photosystem II assembly	9.17E-04
30	GO:0010020: chloroplast fission	9.17E-04
31	GO:0045454: cell redox homeostasis	9.59E-04
32	GO:0006696: ergosterol biosynthetic process	9.79E-04
33	GO:0015783: GDP-fucose transport	9.79E-04
34	GO:0090506: axillary shoot meristem initiation	9.79E-04
35	GO:0070828: heterochromatin organization	9.79E-04
36	GO:0009768: photosynthesis, light harvesting in photosystem I	1.38E-03
37	GO:0043572: plastid fission	1.40E-03
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.40E-03
39	GO:0007231: osmosensory signaling pathway	1.40E-03
40	GO:0006241: CTP biosynthetic process	1.40E-03
41	GO:0072334: UDP-galactose transmembrane transport	1.40E-03
42	GO:0006165: nucleoside diphosphate phosphorylation	1.40E-03
43	GO:0006228: UTP biosynthetic process	1.40E-03
44	GO:0009765: photosynthesis, light harvesting	1.87E-03
45	GO:0006183: GTP biosynthetic process	1.87E-03
46	GO:0045727: positive regulation of translation	1.87E-03
47	GO:0033500: carbohydrate homeostasis	1.87E-03
48	GO:2000038: regulation of stomatal complex development	1.87E-03
49	GO:0006546: glycine catabolic process	1.87E-03
50	GO:0042991: transcription factor import into nucleus	1.87E-03
51	GO:0009902: chloroplast relocation	1.87E-03
52	GO:0000413: protein peptidyl-prolyl isomerization	2.30E-03
53	GO:0016123: xanthophyll biosynthetic process	2.39E-03
54	GO:0006665: sphingolipid metabolic process	2.39E-03
55	GO:0010375: stomatal complex patterning	2.39E-03
56	GO:0046785: microtubule polymerization	2.39E-03
57	GO:0016120: carotene biosynthetic process	2.39E-03
58	GO:0006656: phosphatidylcholine biosynthetic process	2.39E-03
59	GO:0006810: transport	2.79E-03
60	GO:0042549: photosystem II stabilization	2.95E-03
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.95E-03
62	GO:0016554: cytidine to uridine editing	2.95E-03
63	GO:0006828: manganese ion transport	2.95E-03
64	GO:0010190: cytochrome b6f complex assembly	2.95E-03
65	GO:0009735: response to cytokinin	3.24E-03
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.40E-03
67	GO:0010019: chloroplast-nucleus signaling pathway	3.55E-03
68	GO:0010555: response to mannitol	3.55E-03
69	GO:0010067: procambium histogenesis	3.55E-03
70	GO:0007267: cell-cell signaling	3.93E-03
71	GO:0042742: defense response to bacterium	4.02E-03
72	GO:0009645: response to low light intensity stimulus	4.19E-03
73	GO:0007155: cell adhesion	4.86E-03
74	GO:0030091: protein repair	4.86E-03
75	GO:0009642: response to light intensity	4.86E-03
76	GO:0017004: cytochrome complex assembly	5.57E-03
77	GO:0009657: plastid organization	5.57E-03
78	GO:0006633: fatty acid biosynthetic process	5.58E-03
79	GO:0009817: defense response to fungus, incompatible interaction	5.76E-03
80	GO:0000160: phosphorelay signal transduction system	6.05E-03
81	GO:0045490: pectin catabolic process	6.29E-03
82	GO:0006754: ATP biosynthetic process	6.31E-03
83	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.31E-03
84	GO:0045337: farnesyl diphosphate biosynthetic process	6.31E-03
85	GO:0010206: photosystem II repair	6.31E-03
86	GO:0033384: geranyl diphosphate biosynthetic process	6.31E-03
87	GO:0010119: regulation of stomatal movement	6.66E-03
88	GO:0016573: histone acetylation	7.09E-03
89	GO:0009638: phototropism	7.09E-03
90	GO:0042761: very long-chain fatty acid biosynthetic process	7.09E-03
91	GO:1900865: chloroplast RNA modification	7.09E-03
92	GO:0009637: response to blue light	7.30E-03
93	GO:0034599: cellular response to oxidative stress	7.63E-03
94	GO:0043069: negative regulation of programmed cell death	7.90E-03
95	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.90E-03
96	GO:0000038: very long-chain fatty acid metabolic process	8.74E-03
97	GO:0019684: photosynthesis, light reaction	8.74E-03
98	GO:0009089: lysine biosynthetic process via diaminopimelate	8.74E-03
99	GO:0043085: positive regulation of catalytic activity	8.74E-03
100	GO:0000272: polysaccharide catabolic process	8.74E-03
101	GO:0006820: anion transport	9.61E-03
102	GO:0050826: response to freezing	1.05E-02
103	GO:0009725: response to hormone	1.05E-02
104	GO:0009767: photosynthetic electron transport chain	1.05E-02
105	GO:0010223: secondary shoot formation	1.14E-02
106	GO:0010143: cutin biosynthetic process	1.14E-02
107	GO:0070588: calcium ion transmembrane transport	1.24E-02
108	GO:0009969: xyloglucan biosynthetic process	1.24E-02
109	GO:0055114: oxidation-reduction process	1.24E-02
110	GO:0009736: cytokinin-activated signaling pathway	1.27E-02
111	GO:0071555: cell wall organization	1.30E-02
112	GO:0009833: plant-type primary cell wall biogenesis	1.34E-02
113	GO:0006071: glycerol metabolic process	1.34E-02
114	GO:0019762: glucosinolate catabolic process	1.34E-02
115	GO:0010025: wax biosynthetic process	1.34E-02
116	GO:0006636: unsaturated fatty acid biosynthetic process	1.34E-02
117	GO:0019344: cysteine biosynthetic process	1.44E-02
118	GO:0006338: chromatin remodeling	1.44E-02
119	GO:0006418: tRNA aminoacylation for protein translation	1.55E-02
120	GO:0010026: trichome differentiation	1.55E-02
121	GO:0007017: microtubule-based process	1.55E-02
122	GO:0061077: chaperone-mediated protein folding	1.65E-02
123	GO:0080092: regulation of pollen tube growth	1.76E-02
124	GO:0019748: secondary metabolic process	1.76E-02
125	GO:0030245: cellulose catabolic process	1.76E-02
126	GO:0042545: cell wall modification	1.76E-02
127	GO:0001944: vasculature development	1.88E-02
128	GO:0009294: DNA mediated transformation	1.88E-02
129	GO:0010089: xylem development	1.99E-02
130	GO:0010091: trichome branching	1.99E-02
131	GO:0019722: calcium-mediated signaling	1.99E-02
132	GO:0009409: response to cold	2.18E-02
133	GO:0032259: methylation	2.23E-02
134	GO:0010087: phloem or xylem histogenesis	2.23E-02
135	GO:0010118: stomatal movement	2.23E-02
136	GO:0042631: cellular response to water deprivation	2.23E-02
137	GO:0000271: polysaccharide biosynthetic process	2.23E-02
138	GO:0006342: chromatin silencing	2.35E-02
139	GO:0045489: pectin biosynthetic process	2.35E-02
140	GO:0006662: glycerol ether metabolic process	2.35E-02
141	GO:0048825: cotyledon development	2.60E-02
142	GO:0071554: cell wall organization or biogenesis	2.73E-02
143	GO:0000302: response to reactive oxygen species	2.73E-02
144	GO:0002229: defense response to oomycetes	2.73E-02
145	GO:0007264: small GTPase mediated signal transduction	2.86E-02
146	GO:1901657: glycosyl compound metabolic process	2.99E-02
147	GO:0010090: trichome morphogenesis	2.99E-02
148	GO:0007623: circadian rhythm	3.14E-02
149	GO:0006508: proteolysis	3.46E-02
150	GO:0010027: thylakoid membrane organization	3.55E-02
151	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.69E-02
152	GO:0042128: nitrate assimilation	3.84E-02
153	GO:0048481: plant ovule development	4.29E-02
154	GO:0010218: response to far red light	4.59E-02
155	GO:0009407: toxin catabolic process	4.59E-02
156	GO:0009631: cold acclimation	4.75E-02
157	GO:0042254: ribosome biogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
4	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0051920: peroxiredoxin activity	2.59E-06
11	GO:0016209: antioxidant activity	6.33E-06
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.12E-05
13	GO:0016149: translation release factor activity, codon specific	2.80E-05
14	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.75E-04
15	GO:0080132: fatty acid alpha-hydroxylase activity	2.75E-04
16	GO:0051996: squalene synthase activity	2.75E-04
17	GO:0003747: translation release factor activity	3.94E-04
18	GO:0042389: omega-3 fatty acid desaturase activity	6.04E-04
19	GO:0010297: heteropolysaccharide binding	6.04E-04
20	GO:0004047: aminomethyltransferase activity	6.04E-04
21	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.04E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.04E-04
23	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.04E-04
24	GO:0008967: phosphoglycolate phosphatase activity	6.04E-04
25	GO:0008289: lipid binding	6.16E-04
26	GO:0004089: carbonate dehydratase activity	8.15E-04
27	GO:0005457: GDP-fucose transmembrane transporter activity	9.79E-04
28	GO:0050734: hydroxycinnamoyltransferase activity	9.79E-04
29	GO:0002161: aminoacyl-tRNA editing activity	9.79E-04
30	GO:0004148: dihydrolipoyl dehydrogenase activity	9.79E-04
31	GO:0031409: pigment binding	1.14E-03
32	GO:0005528: FK506 binding	1.26E-03
33	GO:0004550: nucleoside diphosphate kinase activity	1.40E-03
34	GO:0009882: blue light photoreceptor activity	1.40E-03
35	GO:0005460: UDP-glucose transmembrane transporter activity	1.40E-03
36	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.40E-03
37	GO:0004659: prenyltransferase activity	1.87E-03
38	GO:0005319: lipid transporter activity	1.87E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.87E-03
40	GO:0008381: mechanically-gated ion channel activity	2.39E-03
41	GO:0009922: fatty acid elongase activity	2.39E-03
42	GO:0005459: UDP-galactose transmembrane transporter activity	2.39E-03
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.39E-03
44	GO:0030599: pectinesterase activity	2.90E-03
45	GO:0080030: methyl indole-3-acetate esterase activity	2.95E-03
46	GO:0004130: cytochrome-c peroxidase activity	2.95E-03
47	GO:0016688: L-ascorbate peroxidase activity	2.95E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.55E-03
49	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.55E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.55E-03
51	GO:0051753: mannan synthase activity	3.55E-03
52	GO:0019843: rRNA binding	4.17E-03
53	GO:0016168: chlorophyll binding	4.67E-03
54	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.57E-03
55	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	6.31E-03
56	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.31E-03
57	GO:0004337: geranyltranstransferase activity	6.31E-03
58	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.31E-03
59	GO:0009055: electron carrier activity	6.50E-03
60	GO:0005384: manganese ion transmembrane transporter activity	7.09E-03
61	GO:0030234: enzyme regulator activity	7.90E-03
62	GO:0008047: enzyme activator activity	7.90E-03
63	GO:0042802: identical protein binding	8.53E-03
64	GO:0004161: dimethylallyltranstransferase activity	8.74E-03
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.74E-03
66	GO:0008378: galactosyltransferase activity	9.61E-03
67	GO:0000049: tRNA binding	9.61E-03
68	GO:0051537: 2 iron, 2 sulfur cluster binding	1.02E-02
69	GO:0015095: magnesium ion transmembrane transporter activity	1.05E-02
70	GO:0031072: heat shock protein binding	1.05E-02
71	GO:0000155: phosphorelay sensor kinase activity	1.05E-02
72	GO:0005262: calcium channel activity	1.05E-02
73	GO:0004565: beta-galactosidase activity	1.05E-02
74	GO:0004601: peroxidase activity	1.10E-02
75	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.34E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.34E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.34E-02
78	GO:0045330: aspartyl esterase activity	1.41E-02
79	GO:0004857: enzyme inhibitor activity	1.44E-02
80	GO:0003824: catalytic activity	1.52E-02
81	GO:0008324: cation transmembrane transporter activity	1.55E-02
82	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.56E-02
83	GO:0004176: ATP-dependent peptidase activity	1.65E-02
84	GO:0033612: receptor serine/threonine kinase binding	1.65E-02
85	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.76E-02
86	GO:0030570: pectate lyase activity	1.88E-02
87	GO:0008810: cellulase activity	1.88E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.99E-02
89	GO:0003756: protein disulfide isomerase activity	1.99E-02
90	GO:0047134: protein-disulfide reductase activity	2.11E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	2.11E-02
92	GO:0005102: receptor binding	2.11E-02
93	GO:0046872: metal ion binding	2.22E-02
94	GO:0003924: GTPase activity	2.36E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-02
96	GO:0050662: coenzyme binding	2.47E-02
97	GO:0010181: FMN binding	2.47E-02
98	GO:0005516: calmodulin binding	2.56E-02
99	GO:0004872: receptor activity	2.60E-02
100	GO:0019901: protein kinase binding	2.60E-02
101	GO:0048038: quinone binding	2.73E-02
102	GO:0004197: cysteine-type endopeptidase activity	2.86E-02
103	GO:0004518: nuclease activity	2.86E-02
104	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.99E-02
105	GO:0000156: phosphorelay response regulator activity	2.99E-02
106	GO:0016759: cellulose synthase activity	3.13E-02
107	GO:0008483: transaminase activity	3.27E-02
108	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.27E-02
109	GO:0008237: metallopeptidase activity	3.27E-02
110	GO:0005200: structural constituent of cytoskeleton	3.27E-02
111	GO:0016413: O-acetyltransferase activity	3.41E-02
112	GO:0005509: calcium ion binding	3.52E-02
113	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.84E-02
114	GO:0004683: calmodulin-dependent protein kinase activity	3.99E-02
115	GO:0102483: scopolin beta-glucosidase activity	3.99E-02
116	GO:0008236: serine-type peptidase activity	4.14E-02
117	GO:0004222: metalloendopeptidase activity	4.59E-02
118	GO:0008168: methyltransferase activity	4.66E-02
119	GO:0050897: cobalt ion binding	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.20E-20
2	GO:0009535: chloroplast thylakoid membrane	5.56E-17
3	GO:0009941: chloroplast envelope	1.61E-14
4	GO:0009543: chloroplast thylakoid lumen	5.55E-11
5	GO:0009570: chloroplast stroma	9.72E-09
6	GO:0009534: chloroplast thylakoid	1.58E-08
7	GO:0048046: apoplast	2.95E-08
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.69E-07
9	GO:0009579: thylakoid	1.55E-06
10	GO:0031225: anchored component of membrane	4.95E-06
11	GO:0046658: anchored component of plasma membrane	5.06E-06
12	GO:0009505: plant-type cell wall	6.04E-06
13	GO:0031977: thylakoid lumen	1.19E-05
14	GO:0030095: chloroplast photosystem II	5.44E-05
15	GO:0010287: plastoglobule	9.66E-05
16	GO:0009654: photosystem II oxygen evolving complex	1.06E-04
17	GO:0009923: fatty acid elongase complex	2.75E-04
18	GO:0009344: nitrite reductase complex [NAD(P)H]	2.75E-04
19	GO:0009782: photosystem I antenna complex	2.75E-04
20	GO:0043190: ATP-binding cassette (ABC) transporter complex	2.75E-04
21	GO:0019898: extrinsic component of membrane	3.00E-04
22	GO:0010319: stromule	4.58E-04
23	GO:0009706: chloroplast inner membrane	5.24E-04
24	GO:0000792: heterochromatin	6.04E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.04E-04
26	GO:0042170: plastid membrane	6.04E-04
27	GO:0030076: light-harvesting complex	1.02E-03
28	GO:0031969: chloroplast membrane	3.23E-03
29	GO:0016021: integral component of membrane	3.96E-03
30	GO:0009533: chloroplast stromal thylakoid	4.19E-03
31	GO:0000123: histone acetyltransferase complex	4.19E-03
32	GO:0005886: plasma membrane	5.78E-03
33	GO:0045298: tubulin complex	6.31E-03
34	GO:0000139: Golgi membrane	7.27E-03
35	GO:0055028: cortical microtubule	7.90E-03
36	GO:0016324: apical plasma membrane	7.90E-03
37	GO:0005794: Golgi apparatus	8.83E-03
38	GO:0009508: plastid chromosome	1.05E-02
39	GO:0005764: lysosome	1.14E-02
40	GO:0016020: membrane	1.33E-02
41	GO:0005875: microtubule associated complex	1.34E-02
42	GO:0005874: microtubule	1.38E-02
43	GO:0005758: mitochondrial intermembrane space	1.44E-02
44	GO:0042651: thylakoid membrane	1.55E-02
45	GO:0009532: plastid stroma	1.65E-02
46	GO:0009536: plastid	1.84E-02
47	GO:0000790: nuclear chromatin	2.11E-02
48	GO:0009522: photosystem I	2.47E-02
49	GO:0009523: photosystem II	2.60E-02
50	GO:0009295: nucleoid	3.27E-02
51	GO:0005615: extracellular space	3.51E-02
52	GO:0009707: chloroplast outer membrane	4.29E-02
53	GO:0022626: cytosolic ribosome	4.54E-02
54	GO:0015934: large ribosomal subunit	4.75E-02
55	GO:0000786: nucleosome	4.91E-02