co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006792: regulation of sulfur utilization	0.00E+00
3	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
4	GO:0010200: response to chitin	4.22E-06
5	GO:0009741: response to brassinosteroid	3.63E-05
6	GO:0050691: regulation of defense response to virus by host	1.08E-04
7	GO:0033481: galacturonate biosynthetic process	1.08E-04
8	GO:0019354: siroheme biosynthetic process	1.08E-04
9	GO:0009751: response to salicylic acid	1.17E-04
10	GO:0071497: cellular response to freezing	2.52E-04
11	GO:0031347: regulation of defense response	3.37E-04
12	GO:0080168: abscisic acid transport	4.19E-04
13	GO:0010581: regulation of starch biosynthetic process	4.19E-04
14	GO:0019722: calcium-mediated signaling	5.60E-04
15	GO:1902358: sulfate transmembrane transport	6.01E-04
16	GO:0032456: endocytic recycling	6.01E-04
17	GO:0000271: polysaccharide biosynthetic process	6.53E-04
18	GO:0009742: brassinosteroid mediated signaling pathway	6.54E-04
19	GO:0046345: abscisic acid catabolic process	7.98E-04
20	GO:0010438: cellular response to sulfur starvation	1.01E-03
21	GO:0009828: plant-type cell wall loosening	1.03E-03
22	GO:0007267: cell-cell signaling	1.09E-03
23	GO:0060918: auxin transport	1.23E-03
24	GO:1900425: negative regulation of defense response to bacterium	1.23E-03
25	GO:0003006: developmental process involved in reproduction	1.23E-03
26	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.29E-03
27	GO:0010411: xyloglucan metabolic process	1.43E-03
28	GO:0030154: cell differentiation	1.49E-03
29	GO:0051510: regulation of unidimensional cell growth	1.73E-03
30	GO:0050829: defense response to Gram-negative bacterium	1.73E-03
31	GO:0009826: unidimensional cell growth	1.97E-03
32	GO:0010439: regulation of glucosinolate biosynthetic process	2.00E-03
33	GO:2000070: regulation of response to water deprivation	2.00E-03
34	GO:0035265: organ growth	2.00E-03
35	GO:0030162: regulation of proteolysis	2.00E-03
36	GO:0051865: protein autoubiquitination	2.57E-03
37	GO:0048507: meristem development	2.57E-03
38	GO:0042546: cell wall biogenesis	2.66E-03
39	GO:0009638: phototropism	2.88E-03
40	GO:0006779: porphyrin-containing compound biosynthetic process	2.88E-03
41	GO:0043069: negative regulation of programmed cell death	3.20E-03
42	GO:1903507: negative regulation of nucleic acid-templated transcription	3.53E-03
43	GO:0010015: root morphogenesis	3.53E-03
44	GO:0000038: very long-chain fatty acid metabolic process	3.53E-03
45	GO:0006355: regulation of transcription, DNA-templated	3.58E-03
46	GO:0010582: floral meristem determinacy	3.87E-03
47	GO:0018107: peptidyl-threonine phosphorylation	4.23E-03
48	GO:0009718: anthocyanin-containing compound biosynthetic process	4.23E-03
49	GO:0010540: basipetal auxin transport	4.59E-03
50	GO:0048467: gynoecium development	4.59E-03
51	GO:0034605: cellular response to heat	4.59E-03
52	GO:0002237: response to molecule of bacterial origin	4.59E-03
53	GO:0009753: response to jasmonic acid	4.85E-03
54	GO:0009969: xyloglucan biosynthetic process	4.96E-03
55	GO:0009225: nucleotide-sugar metabolic process	4.96E-03
56	GO:0006487: protein N-linked glycosylation	5.75E-03
57	GO:0019953: sexual reproduction	6.15E-03
58	GO:0006357: regulation of transcription from RNA polymerase II promoter	6.33E-03
59	GO:0016998: cell wall macromolecule catabolic process	6.56E-03
60	GO:0009845: seed germination	6.58E-03
61	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.99E-03
62	GO:0010017: red or far-red light signaling pathway	6.99E-03
63	GO:0009411: response to UV	7.42E-03
64	GO:0040007: growth	7.42E-03
65	GO:0040008: regulation of growth	8.01E-03
66	GO:0048653: anther development	8.79E-03
67	GO:0009738: abscisic acid-activated signaling pathway	8.81E-03
68	GO:0009958: positive gravitropism	9.26E-03
69	GO:0010268: brassinosteroid homeostasis	9.26E-03
70	GO:0045489: pectin biosynthetic process	9.26E-03
71	GO:0035556: intracellular signal transduction	9.85E-03
72	GO:0009791: post-embryonic development	1.02E-02
73	GO:0016132: brassinosteroid biosynthetic process	1.07E-02
74	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.07E-02
75	GO:0002229: defense response to oomycetes	1.07E-02
76	GO:0010583: response to cyclopentenone	1.12E-02
77	GO:0009639: response to red or far red light	1.23E-02
78	GO:0016125: sterol metabolic process	1.23E-02
79	GO:0019760: glucosinolate metabolic process	1.23E-02
80	GO:0001666: response to hypoxia	1.39E-02
81	GO:0009860: pollen tube growth	1.40E-02
82	GO:0009723: response to ethylene	1.51E-02
83	GO:0016049: cell growth	1.62E-02
84	GO:0048481: plant ovule development	1.68E-02
85	GO:0009737: response to abscisic acid	1.72E-02
86	GO:0046777: protein autophosphorylation	1.73E-02
87	GO:0048767: root hair elongation	1.74E-02
88	GO:0009813: flavonoid biosynthetic process	1.74E-02
89	GO:0044550: secondary metabolite biosynthetic process	1.76E-02
90	GO:0010218: response to far red light	1.80E-02
91	GO:0048527: lateral root development	1.86E-02
92	GO:0045454: cell redox homeostasis	1.94E-02
93	GO:0016051: carbohydrate biosynthetic process	1.99E-02
94	GO:0009637: response to blue light	1.99E-02
95	GO:0006351: transcription, DNA-templated	2.03E-02
96	GO:0071555: cell wall organization	2.25E-02
97	GO:0042542: response to hydrogen peroxide	2.31E-02
98	GO:0010114: response to red light	2.38E-02
99	GO:0006629: lipid metabolic process	2.39E-02
100	GO:0009733: response to auxin	2.60E-02
101	GO:0006855: drug transmembrane transport	2.66E-02
102	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.73E-02
103	GO:0009664: plant-type cell wall organization	2.80E-02
104	GO:0016567: protein ubiquitination	2.91E-02
105	GO:0006486: protein glycosylation	2.94E-02
106	GO:0009585: red, far-red light phototransduction	2.94E-02
107	GO:0051603: proteolysis involved in cellular protein catabolic process	3.02E-02
108	GO:0009873: ethylene-activated signaling pathway	3.08E-02
109	GO:0048316: seed development	3.39E-02
110	GO:0018105: peptidyl-serine phosphorylation	3.86E-02
111	GO:0006468: protein phosphorylation	4.34E-02

Rank	GO Term	Adjusted P value
1	GO:0047890: flavanone 4-reductase activity	0.00E+00
2	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
3	GO:0004851: uroporphyrin-III C-methyltransferase activity	0.00E+00
4	GO:0045552: dihydrokaempferol 4-reductase activity	0.00E+00
5	GO:0080132: fatty acid alpha-hydroxylase activity	1.08E-04
6	GO:0090440: abscisic acid transporter activity	1.08E-04
7	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	4.19E-04
8	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	6.01E-04
9	GO:0033843: xyloglucan 6-xylosyltransferase activity	6.01E-04
10	GO:0043565: sequence-specific DNA binding	7.13E-04
11	GO:0050378: UDP-glucuronate 4-epimerase activity	7.98E-04
12	GO:0002020: protease binding	1.01E-03
13	GO:0035252: UDP-xylosyltransferase activity	1.23E-03
14	GO:0010427: abscisic acid binding	1.23E-03
15	GO:0044212: transcription regulatory region DNA binding	1.28E-03
16	GO:0019900: kinase binding	1.47E-03
17	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.75E-03
18	GO:0008271: secondary active sulfate transmembrane transporter activity	2.28E-03
19	GO:0004672: protein kinase activity	2.51E-03
20	GO:0004864: protein phosphatase inhibitor activity	3.20E-03
21	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.40E-03
22	GO:0031625: ubiquitin protein ligase binding	3.79E-03
23	GO:0015116: sulfate transmembrane transporter activity	3.87E-03
24	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.90E-03
25	GO:0003712: transcription cofactor activity	4.96E-03
26	GO:0005506: iron ion binding	5.36E-03
27	GO:0008134: transcription factor binding	5.75E-03
28	GO:0003714: transcription corepressor activity	5.75E-03
29	GO:0016758: transferase activity, transferring hexosyl groups	5.92E-03
30	GO:0004674: protein serine/threonine kinase activity	6.74E-03
31	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.99E-03
32	GO:0004402: histone acetyltransferase activity	8.79E-03
33	GO:0001085: RNA polymerase II transcription factor binding	9.26E-03
34	GO:0050662: coenzyme binding	9.74E-03
35	GO:0004872: receptor activity	1.02E-02
36	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.07E-02
37	GO:0016757: transferase activity, transferring glycosyl groups	1.09E-02
38	GO:0016759: cellulose synthase activity	1.23E-02
39	GO:0003682: chromatin binding	1.38E-02
40	GO:0003677: DNA binding	1.39E-02
41	GO:0019825: oxygen binding	1.44E-02
42	GO:0008375: acetylglucosaminyltransferase activity	1.51E-02
43	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.56E-02
44	GO:0004806: triglyceride lipase activity	1.56E-02
45	GO:0015238: drug transmembrane transporter activity	1.74E-02
46	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.86E-02
47	GO:0004871: signal transducer activity	2.03E-02
48	GO:0004185: serine-type carboxypeptidase activity	2.38E-02
49	GO:0043621: protein self-association	2.52E-02
50	GO:0015293: symporter activity	2.59E-02
51	GO:0016298: lipase activity	3.02E-02
52	GO:0004842: ubiquitin-protein transferase activity	3.36E-02
53	GO:0005515: protein binding	3.55E-02
54	GO:0015035: protein disulfide oxidoreductase activity	3.86E-02
55	GO:0020037: heme binding	3.96E-02
56	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0090568: nuclear transcriptional repressor complex	0.00E+00
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.19E-04
3	GO:0009505: plant-type cell wall	4.52E-04
4	GO:0035619: root hair tip	6.01E-04
5	GO:0005794: Golgi apparatus	7.75E-04
6	GO:0032588: trans-Golgi network membrane	1.23E-03
7	GO:0005615: extracellular space	1.37E-03
8	GO:0031901: early endosome membrane	2.57E-03
9	GO:0048046: apoplast	3.72E-03
10	GO:0005770: late endosome	9.26E-03
11	GO:0032580: Golgi cisterna membrane	1.23E-02
12	GO:0005667: transcription factor complex	1.51E-02
13	GO:0019005: SCF ubiquitin ligase complex	1.68E-02
14	GO:0009506: plasmodesma	1.77E-02
15	GO:0016021: integral component of membrane	2.01E-02
16	GO:0005886: plasma membrane	2.02E-02
17	GO:0031902: late endosome membrane	2.25E-02
18	GO:0000139: Golgi membrane	3.28E-02