Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0070455: positive regulation of heme biosynthetic process0.00E+00
14GO:0006412: translation1.11E-19
15GO:0032544: plastid translation6.26E-14
16GO:0042254: ribosome biogenesis3.17E-12
17GO:0009658: chloroplast organization5.52E-11
18GO:0015979: photosynthesis1.01E-06
19GO:0009735: response to cytokinin1.91E-05
20GO:0006633: fatty acid biosynthetic process5.22E-05
21GO:0015976: carbon utilization7.81E-05
22GO:0010027: thylakoid membrane organization9.12E-05
23GO:0010020: chloroplast fission9.60E-05
24GO:0010190: cytochrome b6f complex assembly1.76E-04
25GO:0042742: defense response to bacterium2.62E-04
26GO:0042371: vitamin K biosynthetic process3.55E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway3.55E-04
28GO:0060627: regulation of vesicle-mediated transport3.55E-04
29GO:0043489: RNA stabilization3.55E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.55E-04
31GO:1904964: positive regulation of phytol biosynthetic process3.55E-04
32GO:0000413: protein peptidyl-prolyl isomerization3.68E-04
33GO:0045454: cell redox homeostasis4.44E-04
34GO:0006783: heme biosynthetic process5.70E-04
35GO:0006568: tryptophan metabolic process7.72E-04
36GO:0010424: DNA methylation on cytosine within a CG sequence7.72E-04
37GO:0043039: tRNA aminoacylation7.72E-04
38GO:0006695: cholesterol biosynthetic process7.72E-04
39GO:1902326: positive regulation of chlorophyll biosynthetic process7.72E-04
40GO:0010069: zygote asymmetric cytokinesis in embryo sac7.72E-04
41GO:0006423: cysteinyl-tRNA aminoacylation7.72E-04
42GO:0045036: protein targeting to chloroplast7.85E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation9.04E-04
44GO:0009073: aromatic amino acid family biosynthetic process9.04E-04
45GO:0043085: positive regulation of catalytic activity9.04E-04
46GO:0055114: oxidation-reduction process1.01E-03
47GO:0006457: protein folding1.04E-03
48GO:0015995: chlorophyll biosynthetic process1.05E-03
49GO:0009817: defense response to fungus, incompatible interaction1.19E-03
50GO:2001295: malonyl-CoA biosynthetic process1.25E-03
51GO:0006518: peptide metabolic process1.25E-03
52GO:0010581: regulation of starch biosynthetic process1.25E-03
53GO:0071492: cellular response to UV-A1.25E-03
54GO:0010207: photosystem II assembly1.31E-03
55GO:0009790: embryo development1.65E-03
56GO:0043572: plastid fission1.80E-03
57GO:0006986: response to unfolded protein1.80E-03
58GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.80E-03
59GO:2001141: regulation of RNA biosynthetic process1.80E-03
60GO:0051085: chaperone mediated protein folding requiring cofactor1.80E-03
61GO:0006241: CTP biosynthetic process1.80E-03
62GO:0019048: modulation by virus of host morphology or physiology1.80E-03
63GO:0009650: UV protection1.80E-03
64GO:0033014: tetrapyrrole biosynthetic process1.80E-03
65GO:0006424: glutamyl-tRNA aminoacylation1.80E-03
66GO:0006165: nucleoside diphosphate phosphorylation1.80E-03
67GO:0046739: transport of virus in multicellular host1.80E-03
68GO:0006228: UTP biosynthetic process1.80E-03
69GO:0031048: chromatin silencing by small RNA1.80E-03
70GO:0009409: response to cold1.82E-03
71GO:0006631: fatty acid metabolic process1.99E-03
72GO:0006418: tRNA aminoacylation for protein translation2.00E-03
73GO:0009793: embryo development ending in seed dormancy2.41E-03
74GO:0010037: response to carbon dioxide2.42E-03
75GO:0006808: regulation of nitrogen utilization2.42E-03
76GO:0071486: cellular response to high light intensity2.42E-03
77GO:0009765: photosynthesis, light harvesting2.42E-03
78GO:0006183: GTP biosynthetic process2.42E-03
79GO:2000122: negative regulation of stomatal complex development2.42E-03
80GO:0051567: histone H3-K9 methylation2.42E-03
81GO:0009411: response to UV2.63E-03
82GO:0019722: calcium-mediated signaling2.86E-03
83GO:0016123: xanthophyll biosynthetic process3.09E-03
84GO:0048359: mucilage metabolic process involved in seed coat development3.09E-03
85GO:0032543: mitochondrial translation3.09E-03
86GO:0016120: carotene biosynthetic process3.09E-03
87GO:0006564: L-serine biosynthetic process3.09E-03
88GO:0042335: cuticle development3.34E-03
89GO:0042549: photosystem II stabilization3.82E-03
90GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.82E-03
91GO:0000470: maturation of LSU-rRNA3.82E-03
92GO:0006796: phosphate-containing compound metabolic process3.82E-03
93GO:0016458: gene silencing3.82E-03
94GO:0010019: chloroplast-nucleus signaling pathway4.60E-03
95GO:0010555: response to mannitol4.60E-03
96GO:0009955: adaxial/abaxial pattern specification4.60E-03
97GO:0042372: phylloquinone biosynthetic process4.60E-03
98GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.60E-03
99GO:0006694: steroid biosynthetic process4.60E-03
100GO:1901259: chloroplast rRNA processing4.60E-03
101GO:0009610: response to symbiotic fungus5.44E-03
102GO:0007267: cell-cell signaling5.73E-03
103GO:0030091: protein repair6.32E-03
104GO:0009642: response to light intensity6.32E-03
105GO:0042255: ribosome assembly6.32E-03
106GO:0006353: DNA-templated transcription, termination6.32E-03
107GO:0009808: lignin metabolic process7.25E-03
108GO:0009932: cell tip growth7.25E-03
109GO:0071482: cellular response to light stimulus7.25E-03
110GO:0019430: removal of superoxide radicals7.25E-03
111GO:0010497: plasmodesmata-mediated intercellular transport7.25E-03
112GO:0009657: plastid organization7.25E-03
113GO:0006526: arginine biosynthetic process7.25E-03
114GO:0015780: nucleotide-sugar transport8.22E-03
115GO:0045337: farnesyl diphosphate biosynthetic process8.22E-03
116GO:0033384: geranyl diphosphate biosynthetic process8.22E-03
117GO:0018298: protein-chromophore linkage8.42E-03
118GO:0006869: lipid transport8.71E-03
119GO:0043067: regulation of programmed cell death9.24E-03
120GO:0006779: porphyrin-containing compound biosynthetic process9.24E-03
121GO:0006349: regulation of gene expression by genetic imprinting9.24E-03
122GO:0010380: regulation of chlorophyll biosynthetic process9.24E-03
123GO:0009631: cold acclimation9.74E-03
124GO:0030422: production of siRNA involved in RNA interference1.03E-02
125GO:0043069: negative regulation of programmed cell death1.03E-02
126GO:0006949: syncytium formation1.03E-02
127GO:0006782: protoporphyrinogen IX biosynthetic process1.03E-02
128GO:0009637: response to blue light1.07E-02
129GO:0034599: cellular response to oxidative stress1.12E-02
130GO:0055085: transmembrane transport1.12E-02
131GO:0010216: maintenance of DNA methylation1.14E-02
132GO:0009773: photosynthetic electron transport in photosystem I1.14E-02
133GO:0006352: DNA-templated transcription, initiation1.14E-02
134GO:0006415: translational termination1.14E-02
135GO:0006839: mitochondrial transport1.22E-02
136GO:0006508: proteolysis1.25E-02
137GO:0045037: protein import into chloroplast stroma1.26E-02
138GO:0010114: response to red light1.38E-02
139GO:0009725: response to hormone1.38E-02
140GO:0009767: photosynthetic electron transport chain1.38E-02
141GO:0006006: glucose metabolic process1.38E-02
142GO:0010143: cutin biosynthetic process1.50E-02
143GO:0019253: reductive pentose-phosphate cycle1.50E-02
144GO:0019762: glucosinolate catabolic process1.76E-02
145GO:0019344: cysteine biosynthetic process1.89E-02
146GO:0000027: ribosomal large subunit assembly1.89E-02
147GO:0007010: cytoskeleton organization1.89E-02
148GO:0009768: photosynthesis, light harvesting in photosystem I2.03E-02
149GO:0061077: chaperone-mediated protein folding2.17E-02
150GO:0006306: DNA methylation2.17E-02
151GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.43E-02
152GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.46E-02
153GO:0009294: DNA mediated transformation2.46E-02
154GO:0016117: carotenoid biosynthetic process2.77E-02
155GO:0008033: tRNA processing2.92E-02
156GO:0010197: polar nucleus fusion3.08E-02
157GO:0006342: chromatin silencing3.08E-02
158GO:0006520: cellular amino acid metabolic process3.08E-02
159GO:0006662: glycerol ether metabolic process3.08E-02
160GO:0007018: microtubule-based movement3.25E-02
161GO:0009791: post-embryonic development3.41E-02
162GO:0016132: brassinosteroid biosynthetic process3.58E-02
163GO:0000302: response to reactive oxygen species3.58E-02
164GO:0032502: developmental process3.75E-02
165GO:0016032: viral process3.75E-02
166GO:0042744: hydrogen peroxide catabolic process3.79E-02
167GO:0009828: plant-type cell wall loosening4.11E-02
168GO:0051607: defense response to virus4.47E-02
169GO:0006810: transport4.68E-02
170GO:0009816: defense response to bacterium, incompatible interaction4.84E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0050614: delta24-sterol reductase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0019843: rRNA binding9.86E-26
15GO:0003735: structural constituent of ribosome3.57E-21
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.65E-09
17GO:0051920: peroxiredoxin activity4.17E-08
18GO:0016209: antioxidant activity1.48E-07
19GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.67E-06
20GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.99E-05
21GO:0043495: protein anchor7.81E-05
22GO:0005528: FK506 binding1.57E-04
23GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.55E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.55E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity3.55E-04
26GO:0080132: fatty acid alpha-hydroxylase activity3.55E-04
27GO:0004831: tyrosine-tRNA ligase activity3.55E-04
28GO:0004655: porphobilinogen synthase activity3.55E-04
29GO:0004617: phosphoglycerate dehydrogenase activity7.72E-04
30GO:0004817: cysteine-tRNA ligase activity7.72E-04
31GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.72E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.72E-04
33GO:0008047: enzyme activator activity7.85E-04
34GO:0016168: chlorophyll binding9.14E-04
35GO:0004089: carbonate dehydratase activity1.17E-03
36GO:0030267: glyoxylate reductase (NADP) activity1.25E-03
37GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.25E-03
38GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.25E-03
39GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.25E-03
40GO:0070330: aromatase activity1.25E-03
41GO:0017150: tRNA dihydrouridine synthase activity1.25E-03
42GO:0050734: hydroxycinnamoyltransferase activity1.25E-03
43GO:0005504: fatty acid binding1.25E-03
44GO:0002161: aminoacyl-tRNA editing activity1.25E-03
45GO:0004148: dihydrolipoyl dehydrogenase activity1.25E-03
46GO:0004075: biotin carboxylase activity1.25E-03
47GO:0008266: poly(U) RNA binding1.31E-03
48GO:0043023: ribosomal large subunit binding1.80E-03
49GO:0008097: 5S rRNA binding1.80E-03
50GO:0016149: translation release factor activity, codon specific1.80E-03
51GO:0035197: siRNA binding1.80E-03
52GO:0004550: nucleoside diphosphate kinase activity1.80E-03
53GO:0001053: plastid sigma factor activity2.42E-03
54GO:0016836: hydro-lyase activity2.42E-03
55GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.42E-03
56GO:0004045: aminoacyl-tRNA hydrolase activity2.42E-03
57GO:0016987: sigma factor activity2.42E-03
58GO:0045430: chalcone isomerase activity2.42E-03
59GO:0022891: substrate-specific transmembrane transporter activity2.63E-03
60GO:0051287: NAD binding2.82E-03
61GO:0003989: acetyl-CoA carboxylase activity3.09E-03
62GO:0004812: aminoacyl-tRNA ligase activity3.09E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor3.09E-03
64GO:0018685: alkane 1-monooxygenase activity3.09E-03
65GO:0004040: amidase activity3.09E-03
66GO:0008200: ion channel inhibitor activity3.82E-03
67GO:0004130: cytochrome-c peroxidase activity3.82E-03
68GO:0016208: AMP binding3.82E-03
69GO:0016462: pyrophosphatase activity3.82E-03
70GO:0016688: L-ascorbate peroxidase activity3.82E-03
71GO:0004791: thioredoxin-disulfide reductase activity3.88E-03
72GO:0004601: peroxidase activity4.15E-03
73GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.60E-03
74GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.60E-03
75GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.60E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.07E-03
77GO:0051082: unfolded protein binding5.07E-03
78GO:0016831: carboxy-lyase activity5.44E-03
79GO:0004427: inorganic diphosphatase activity5.44E-03
80GO:0019899: enzyme binding5.44E-03
81GO:0052747: sinapyl alcohol dehydrogenase activity6.32E-03
82GO:0004033: aldo-keto reductase (NADP) activity6.32E-03
83GO:0003729: mRNA binding6.57E-03
84GO:0003747: translation release factor activity8.22E-03
85GO:0004337: geranyltranstransferase activity8.22E-03
86GO:0047617: acyl-CoA hydrolase activity9.24E-03
87GO:0004222: metalloendopeptidase activity9.29E-03
88GO:0030145: manganese ion binding9.74E-03
89GO:0003924: GTPase activity1.04E-02
90GO:0003746: translation elongation factor activity1.07E-02
91GO:0003723: RNA binding1.08E-02
92GO:0004161: dimethylallyltranstransferase activity1.14E-02
93GO:0045551: cinnamyl-alcohol dehydrogenase activity1.26E-02
94GO:0004521: endoribonuclease activity1.26E-02
95GO:0000049: tRNA binding1.26E-02
96GO:0005507: copper ion binding1.36E-02
97GO:0031072: heat shock protein binding1.38E-02
98GO:0042802: identical protein binding1.38E-02
99GO:0016491: oxidoreductase activity1.45E-02
100GO:0008289: lipid binding1.71E-02
101GO:0000287: magnesium ion binding1.74E-02
102GO:0031409: pigment binding1.76E-02
103GO:0016788: hydrolase activity, acting on ester bonds1.82E-02
104GO:0051087: chaperone binding2.03E-02
105GO:0004176: ATP-dependent peptidase activity2.17E-02
106GO:0045735: nutrient reservoir activity2.21E-02
107GO:0030570: pectate lyase activity2.46E-02
108GO:0003727: single-stranded RNA binding2.61E-02
109GO:0008514: organic anion transmembrane transporter activity2.61E-02
110GO:0052689: carboxylic ester hydrolase activity2.64E-02
111GO:0047134: protein-disulfide reductase activity2.77E-02
112GO:0008080: N-acetyltransferase activity3.08E-02
113GO:0050662: coenzyme binding3.25E-02
114GO:0010181: FMN binding3.25E-02
115GO:0016762: xyloglucan:xyloglucosyl transferase activity3.58E-02
116GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.69E-02
117GO:0016722: oxidoreductase activity, oxidizing metal ions4.29E-02
118GO:0008237: metallopeptidase activity4.29E-02
119GO:0016597: amino acid binding4.47E-02
120GO:0008017: microtubule binding4.79E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009570: chloroplast stroma3.29E-71
5GO:0009507: chloroplast4.04E-67
6GO:0009941: chloroplast envelope5.44E-49
7GO:0009579: thylakoid2.81E-31
8GO:0005840: ribosome1.18E-23
9GO:0009535: chloroplast thylakoid membrane9.07E-23
10GO:0009543: chloroplast thylakoid lumen6.00E-16
11GO:0031977: thylakoid lumen1.32E-15
12GO:0009534: chloroplast thylakoid1.24E-09
13GO:0048046: apoplast4.44E-07
14GO:0009505: plant-type cell wall5.90E-06
15GO:0009654: photosystem II oxygen evolving complex8.40E-06
16GO:0009536: plastid2.91E-05
17GO:0000311: plastid large ribosomal subunit6.50E-05
18GO:0042651: thylakoid membrane1.81E-04
19GO:0015934: large ribosomal subunit1.90E-04
20GO:0009547: plastid ribosome3.55E-04
21GO:0019898: extrinsic component of membrane4.90E-04
22GO:0016020: membrane5.33E-04
23GO:0046658: anchored component of plasma membrane7.09E-04
24GO:0010319: stromule7.37E-04
25GO:0009706: chloroplast inner membrane9.28E-04
26GO:0031012: extracellular matrix1.17E-03
27GO:0030095: chloroplast photosystem II1.31E-03
28GO:0000312: plastid small ribosomal subunit1.31E-03
29GO:0005875: microtubule associated complex1.64E-03
30GO:0005719: nuclear euchromatin1.80E-03
31GO:0015935: small ribosomal subunit2.20E-03
32GO:0009532: plastid stroma2.20E-03
33GO:0005618: cell wall3.86E-03
34GO:0009523: photosystem II4.16E-03
35GO:0031225: anchored component of membrane5.09E-03
36GO:0009533: chloroplast stromal thylakoid5.44E-03
37GO:0031969: chloroplast membrane5.75E-03
38GO:0030529: intracellular ribonucleoprotein complex6.44E-03
39GO:0005623: cell6.99E-03
40GO:0009539: photosystem II reaction center7.25E-03
41GO:0005763: mitochondrial small ribosomal subunit8.22E-03
42GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.22E-03
43GO:0015030: Cajal body9.24E-03
44GO:0030076: light-harvesting complex1.62E-02
45GO:0043234: protein complex1.76E-02
46GO:0005874: microtubule2.23E-02
47GO:0022626: cytosolic ribosome2.30E-02
48GO:0022625: cytosolic large ribosomal subunit2.48E-02
49GO:0005871: kinesin complex2.77E-02
50GO:0010287: plastoglobule3.16E-02
51GO:0009522: photosystem I3.25E-02
52GO:0005743: mitochondrial inner membrane3.46E-02
53GO:0005759: mitochondrial matrix4.17E-02
54GO:0005778: peroxisomal membrane4.29E-02
55GO:0009295: nucleoid4.29E-02
Gene type



Gene DE type