GO Enrichment Analysis of Co-expressed Genes with
AT4G01290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010793: regulation of mRNA export from nucleus | 0.00E+00 |
| 2 | GO:0016236: macroautophagy | 0.00E+00 |
| 3 | GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.00E+00 |
| 4 | GO:0010111: glyoxysome organization | 0.00E+00 |
| 5 | GO:2001253: regulation of histone H3-K36 trimethylation | 0.00E+00 |
| 6 | GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 0.00E+00 |
| 7 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.78E-06 |
| 8 | GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic | 3.25E-05 |
| 9 | GO:0030242: pexophagy | 3.25E-05 |
| 10 | GO:0009695: jasmonic acid biosynthetic process | 7.49E-05 |
| 11 | GO:0019395: fatty acid oxidation | 8.18E-05 |
| 12 | GO:0050684: regulation of mRNA processing | 8.18E-05 |
| 13 | GO:0045948: positive regulation of translational initiation | 8.18E-05 |
| 14 | GO:0032784: regulation of DNA-templated transcription, elongation | 1.42E-04 |
| 15 | GO:0031022: nuclear migration along microfilament | 1.42E-04 |
| 16 | GO:0006623: protein targeting to vacuole | 1.69E-04 |
| 17 | GO:0006635: fatty acid beta-oxidation | 1.82E-04 |
| 18 | GO:0019048: modulation by virus of host morphology or physiology | 2.11E-04 |
| 19 | GO:0045324: late endosome to vacuole transport | 2.85E-04 |
| 20 | GO:0009902: chloroplast relocation | 2.85E-04 |
| 21 | GO:0033320: UDP-D-xylose biosynthetic process | 2.85E-04 |
| 22 | GO:0042732: D-xylose metabolic process | 4.48E-04 |
| 23 | GO:0033962: cytoplasmic mRNA processing body assembly | 5.36E-04 |
| 24 | GO:0048280: vesicle fusion with Golgi apparatus | 5.36E-04 |
| 25 | GO:0019509: L-methionine salvage from methylthioadenosine | 5.36E-04 |
| 26 | GO:0006333: chromatin assembly or disassembly | 6.27E-04 |
| 27 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 6.27E-04 |
| 28 | GO:0006397: mRNA processing | 6.48E-04 |
| 29 | GO:0006605: protein targeting | 7.22E-04 |
| 30 | GO:0006367: transcription initiation from RNA polymerase II promoter | 8.20E-04 |
| 31 | GO:0048193: Golgi vesicle transport | 8.20E-04 |
| 32 | GO:0006896: Golgi to vacuole transport | 1.13E-03 |
| 33 | GO:0006829: zinc II ion transport | 1.47E-03 |
| 34 | GO:0010102: lateral root morphogenesis | 1.47E-03 |
| 35 | GO:0071732: cellular response to nitric oxide | 1.72E-03 |
| 36 | GO:0009225: nucleotide-sugar metabolic process | 1.72E-03 |
| 37 | GO:0034976: response to endoplasmic reticulum stress | 1.85E-03 |
| 38 | GO:0006406: mRNA export from nucleus | 1.99E-03 |
| 39 | GO:0006825: copper ion transport | 2.12E-03 |
| 40 | GO:0031408: oxylipin biosynthetic process | 2.26E-03 |
| 41 | GO:0071369: cellular response to ethylene stimulus | 2.55E-03 |
| 42 | GO:0009306: protein secretion | 2.69E-03 |
| 43 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.84E-03 |
| 44 | GO:0042147: retrograde transport, endosome to Golgi | 2.84E-03 |
| 45 | GO:0051028: mRNA transport | 2.84E-03 |
| 46 | GO:0006970: response to osmotic stress | 2.93E-03 |
| 47 | GO:0010501: RNA secondary structure unwinding | 3.00E-03 |
| 48 | GO:0016032: viral process | 3.80E-03 |
| 49 | GO:0009630: gravitropism | 3.80E-03 |
| 50 | GO:0071281: cellular response to iron ion | 3.97E-03 |
| 51 | GO:0006886: intracellular protein transport | 4.14E-03 |
| 52 | GO:0006904: vesicle docking involved in exocytosis | 4.32E-03 |
| 53 | GO:0016579: protein deubiquitination | 4.49E-03 |
| 54 | GO:0048573: photoperiodism, flowering | 5.22E-03 |
| 55 | GO:0006888: ER to Golgi vesicle-mediated transport | 5.22E-03 |
| 56 | GO:0006499: N-terminal protein myristoylation | 5.99E-03 |
| 57 | GO:0010119: regulation of stomatal movement | 6.19E-03 |
| 58 | GO:0009873: ethylene-activated signaling pathway | 6.37E-03 |
| 59 | GO:0030001: metal ion transport | 7.22E-03 |
| 60 | GO:0006897: endocytosis | 7.43E-03 |
| 61 | GO:0009846: pollen germination | 9.22E-03 |
| 62 | GO:0006417: regulation of translation | 1.04E-02 |
| 63 | GO:0006457: protein folding | 1.13E-02 |
| 64 | GO:0009742: brassinosteroid mediated signaling pathway | 1.29E-02 |
| 65 | GO:0000398: mRNA splicing, via spliceosome | 1.37E-02 |
| 66 | GO:0009845: seed germination | 1.54E-02 |
| 67 | GO:0009790: embryo development | 1.62E-02 |
| 68 | GO:0006979: response to oxidative stress | 1.79E-02 |
| 69 | GO:0008380: RNA splicing | 2.07E-02 |
| 70 | GO:0009723: response to ethylene | 2.77E-02 |
| 71 | GO:0010200: response to chitin | 2.98E-02 |
| 72 | GO:0045454: cell redox homeostasis | 3.31E-02 |
| 73 | GO:0016310: phosphorylation | 4.35E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000384: first spliceosomal transesterification activity | 0.00E+00 |
| 2 | GO:0046522: S-methyl-5-thioribose kinase activity | 0.00E+00 |
| 3 | GO:0008692: 3-hydroxybutyryl-CoA epimerase activity | 3.25E-05 |
| 4 | GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity | 8.18E-05 |
| 5 | GO:0003988: acetyl-CoA C-acyltransferase activity | 8.18E-05 |
| 6 | GO:0004180: carboxypeptidase activity | 1.42E-04 |
| 7 | GO:0005047: signal recognition particle binding | 1.42E-04 |
| 8 | GO:0019829: cation-transporting ATPase activity | 1.42E-04 |
| 9 | GO:0030527: structural constituent of chromatin | 2.11E-04 |
| 10 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 2.11E-04 |
| 11 | GO:0004300: enoyl-CoA hydratase activity | 2.11E-04 |
| 12 | GO:0004004: ATP-dependent RNA helicase activity | 3.15E-04 |
| 13 | GO:0048040: UDP-glucuronate decarboxylase activity | 4.48E-04 |
| 14 | GO:0031369: translation initiation factor binding | 4.48E-04 |
| 15 | GO:0003730: mRNA 3'-UTR binding | 5.36E-04 |
| 16 | GO:0070403: NAD+ binding | 5.36E-04 |
| 17 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 5.36E-04 |
| 18 | GO:0005375: copper ion transmembrane transporter activity | 8.20E-04 |
| 19 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1.47E-03 |
| 20 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 2.26E-03 |
| 21 | GO:0003727: single-stranded RNA binding | 2.69E-03 |
| 22 | GO:0003756: protein disulfide isomerase activity | 2.69E-03 |
| 23 | GO:0050660: flavin adenine dinucleotide binding | 3.14E-03 |
| 24 | GO:0046873: metal ion transmembrane transporter activity | 3.15E-03 |
| 25 | GO:0016853: isomerase activity | 3.31E-03 |
| 26 | GO:0004872: receptor activity | 3.47E-03 |
| 27 | GO:0004197: cysteine-type endopeptidase activity | 3.80E-03 |
| 28 | GO:0003924: GTPase activity | 4.94E-03 |
| 29 | GO:0009055: electron carrier activity | 5.30E-03 |
| 30 | GO:0008236: serine-type peptidase activity | 5.41E-03 |
| 31 | GO:0003746: translation elongation factor activity | 6.60E-03 |
| 32 | GO:0003697: single-stranded DNA binding | 6.60E-03 |
| 33 | GO:0000149: SNARE binding | 7.01E-03 |
| 34 | GO:0005484: SNAP receptor activity | 7.87E-03 |
| 35 | GO:0000166: nucleotide binding | 8.75E-03 |
| 36 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.69E-03 |
| 37 | GO:0005507: copper ion binding | 1.25E-02 |
| 38 | GO:0008026: ATP-dependent helicase activity | 1.29E-02 |
| 39 | GO:0005525: GTP binding | 1.44E-02 |
| 40 | GO:0008565: protein transporter activity | 1.65E-02 |
| 41 | GO:0003676: nucleic acid binding | 1.82E-02 |
| 42 | GO:0042802: identical protein binding | 2.17E-02 |
| 43 | GO:0003682: chromatin binding | 2.60E-02 |
| 44 | GO:0003729: mRNA binding | 2.65E-02 |
| 45 | GO:0008289: lipid binding | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005785: signal recognition particle receptor complex | 0.00E+00 |
| 2 | GO:0071561: nucleus-vacuole junction | 0.00E+00 |
| 3 | GO:0070274: RES complex | 0.00E+00 |
| 4 | GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I | 3.25E-05 |
| 5 | GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II | 3.25E-05 |
| 6 | GO:0005770: late endosome | 1.45E-04 |
| 7 | GO:0000932: P-body | 2.67E-04 |
| 8 | GO:0030140: trans-Golgi network transport vesicle | 4.48E-04 |
| 9 | GO:0031902: late endosome membrane | 5.22E-04 |
| 10 | GO:0030173: integral component of Golgi membrane | 5.36E-04 |
| 11 | GO:0016363: nuclear matrix | 5.36E-04 |
| 12 | GO:0012507: ER to Golgi transport vesicle membrane | 7.22E-04 |
| 13 | GO:0030131: clathrin adaptor complex | 7.22E-04 |
| 14 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 8.20E-04 |
| 15 | GO:0009514: glyoxysome | 8.20E-04 |
| 16 | GO:0010494: cytoplasmic stress granule | 9.20E-04 |
| 17 | GO:0071011: precatalytic spliceosome | 1.02E-03 |
| 18 | GO:0005686: U2 snRNP | 1.13E-03 |
| 19 | GO:0030125: clathrin vesicle coat | 1.13E-03 |
| 20 | GO:0071013: catalytic step 2 spliceosome | 1.24E-03 |
| 21 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.36E-03 |
| 22 | GO:0005795: Golgi stack | 1.72E-03 |
| 23 | GO:0005802: trans-Golgi network | 2.25E-03 |
| 24 | GO:0005905: clathrin-coated pit | 2.26E-03 |
| 25 | GO:0005774: vacuolar membrane | 3.22E-03 |
| 26 | GO:0005794: Golgi apparatus | 3.55E-03 |
| 27 | GO:0000785: chromatin | 3.80E-03 |
| 28 | GO:0000139: Golgi membrane | 4.43E-03 |
| 29 | GO:0005788: endoplasmic reticulum lumen | 4.85E-03 |
| 30 | GO:0005643: nuclear pore | 5.60E-03 |
| 31 | GO:0015934: large ribosomal subunit | 6.19E-03 |
| 32 | GO:0000325: plant-type vacuole | 6.19E-03 |
| 33 | GO:0031201: SNARE complex | 7.43E-03 |
| 34 | GO:0005783: endoplasmic reticulum | 9.31E-03 |
| 35 | GO:0005777: peroxisome | 1.01E-02 |
| 36 | GO:0005681: spliceosomal complex | 1.09E-02 |
| 37 | GO:0016607: nuclear speck | 1.11E-02 |
| 38 | GO:0005623: cell | 1.48E-02 |
| 39 | GO:0005622: intracellular | 1.56E-02 |
| 40 | GO:0005768: endosome | 1.60E-02 |
| 41 | GO:0005759: mitochondrial matrix | 1.71E-02 |
| 42 | GO:0016021: integral component of membrane | 1.83E-02 |
| 43 | GO:0005773: vacuole | 2.50E-02 |
| 44 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.67E-02 |
| 45 | GO:0005789: endoplasmic reticulum membrane | 2.72E-02 |