co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	3.65E-06
4	GO:0010205: photoinhibition	9.75E-06
5	GO:0015979: photosynthesis	1.11E-05
6	GO:0034337: RNA folding	2.08E-05
7	GO:0001736: establishment of planar polarity	5.37E-05
8	GO:1901332: negative regulation of lateral root development	1.42E-04
9	GO:0071484: cellular response to light intensity	1.42E-04
10	GO:0045727: positive regulation of translation	1.95E-04
11	GO:0010311: lateral root formation	2.09E-04
12	GO:0009733: response to auxin	2.41E-04
13	GO:0010438: cellular response to sulfur starvation	2.51E-04
14	GO:0009913: epidermal cell differentiation	3.11E-04
15	GO:0009759: indole glucosinolate biosynthetic process	3.11E-04
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-04
17	GO:0009228: thiamine biosynthetic process	3.11E-04
18	GO:1901259: chloroplast rRNA processing	3.73E-04
19	GO:1900057: positive regulation of leaf senescence	4.37E-04
20	GO:0009772: photosynthetic electron transport in photosystem II	4.37E-04
21	GO:0009734: auxin-activated signaling pathway	4.66E-04
22	GO:0032544: plastid translation	5.74E-04
23	GO:0022900: electron transport chain	5.74E-04
24	GO:0009624: response to nematode	6.19E-04
25	GO:0010206: photosystem II repair	6.45E-04
26	GO:0045893: positive regulation of transcription, DNA-templated	7.39E-04
27	GO:0048829: root cap development	7.94E-04
28	GO:0048765: root hair cell differentiation	8.71E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	8.71E-04
30	GO:0002213: defense response to insect	9.50E-04
31	GO:0009718: anthocyanin-containing compound biosynthetic process	1.03E-03
32	GO:0045490: pectin catabolic process	1.04E-03
33	GO:0010207: photosystem II assembly	1.11E-03
34	GO:0071732: cellular response to nitric oxide	1.20E-03
35	GO:0010030: positive regulation of seed germination	1.20E-03
36	GO:0006636: unsaturated fatty acid biosynthetic process	1.29E-03
37	GO:0000162: tryptophan biosynthetic process	1.29E-03
38	GO:0016114: terpenoid biosynthetic process	1.56E-03
39	GO:0003333: amino acid transmembrane transport	1.56E-03
40	GO:0016998: cell wall macromolecule catabolic process	1.56E-03
41	GO:0035428: hexose transmembrane transport	1.66E-03
42	GO:0071369: cellular response to ethylene stimulus	1.76E-03
43	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.96E-03
44	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.01E-03
45	GO:0042631: cellular response to water deprivation	2.07E-03
46	GO:0009958: positive gravitropism	2.17E-03
47	GO:0046323: glucose import	2.17E-03
48	GO:0015986: ATP synthesis coupled proton transport	2.28E-03
49	GO:0048825: cotyledon development	2.39E-03
50	GO:0016032: viral process	2.61E-03
51	GO:0071281: cellular response to iron ion	2.73E-03
52	GO:0010411: xyloglucan metabolic process	3.58E-03
53	GO:0006865: amino acid transport	4.37E-03
54	GO:0009735: response to cytokinin	4.59E-03
55	GO:0009926: auxin polar transport	5.37E-03
56	GO:0042546: cell wall biogenesis	5.52E-03
57	GO:0006364: rRNA processing	6.59E-03
58	GO:0042545: cell wall modification	8.25E-03
59	GO:0009845: seed germination	1.04E-02
60	GO:0006633: fatty acid biosynthetic process	1.16E-02
61	GO:0007166: cell surface receptor signaling pathway	1.36E-02
62	GO:0009409: response to cold	1.38E-02
63	GO:0009723: response to ethylene	1.87E-02
64	GO:0006468: protein phosphorylation	1.98E-02
65	GO:0045454: cell redox homeostasis	2.23E-02
66	GO:0045892: negative regulation of transcription, DNA-templated	2.25E-02
67	GO:0016310: phosphorylation	2.50E-02
68	GO:0032259: methylation	2.51E-02
69	GO:0009753: response to jasmonic acid	2.72E-02
70	GO:0016567: protein ubiquitination	3.10E-02
71	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.16E-02
72	GO:0009416: response to light stimulus	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.08E-05
3	GO:0045485: omega-6 fatty acid desaturase activity	2.08E-05
4	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	5.37E-05
5	GO:0010011: auxin binding	1.95E-04
6	GO:0010328: auxin influx transmembrane transporter activity	1.95E-04
7	GO:0019843: rRNA binding	7.66E-04
8	GO:0008266: poly(U) RNA binding	1.11E-03
9	GO:0004176: ATP-dependent peptidase activity	1.56E-03
10	GO:0030570: pectate lyase activity	1.76E-03
11	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.17E-03
12	GO:0005355: glucose transmembrane transporter activity	2.28E-03
13	GO:0050662: coenzyme binding	2.28E-03
14	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.50E-03
15	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.58E-03
16	GO:0030145: manganese ion binding	4.24E-03
17	GO:0051537: 2 iron, 2 sulfur cluster binding	5.66E-03
18	GO:0015293: symporter activity	5.81E-03
19	GO:0015171: amino acid transmembrane transporter activity	7.07E-03
20	GO:0045330: aspartyl esterase activity	7.07E-03
21	GO:0030599: pectinesterase activity	8.07E-03
22	GO:0016829: lyase activity	1.04E-02
23	GO:0015144: carbohydrate transmembrane transporter activity	1.12E-02
24	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.18E-02
25	GO:0046910: pectinesterase inhibitor activity	1.18E-02
26	GO:0005351: sugar:proton symporter activity	1.22E-02
27	GO:0042802: identical protein binding	1.46E-02
28	GO:0005515: protein binding	1.47E-02
29	GO:0016301: kinase activity	1.48E-02
30	GO:0003729: mRNA binding	1.51E-02
31	GO:0008233: peptidase activity	1.94E-02
32	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.23E-02
33	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.41E-02
34	GO:0009055: electron carrier activity	2.72E-02
35	GO:0008289: lipid binding	3.28E-02
36	GO:0004674: protein serine/threonine kinase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0030095: chloroplast photosystem II	1.45E-07
2	GO:0009534: chloroplast thylakoid	4.52E-06
3	GO:0009535: chloroplast thylakoid membrane	8.49E-06
4	GO:0009507: chloroplast	6.76E-05
5	GO:0009523: photosystem II	9.22E-05
6	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.11E-04
7	GO:0009941: chloroplast envelope	4.19E-04
8	GO:0009986: cell surface	4.37E-04
9	GO:0009533: chloroplast stromal thylakoid	4.37E-04
10	GO:0009538: photosystem I reaction center	5.05E-04
11	GO:0008180: COP9 signalosome	6.45E-04
12	GO:0010287: plastoglobule	7.28E-04
13	GO:0009543: chloroplast thylakoid lumen	7.66E-04
14	GO:0009579: thylakoid	7.77E-04
15	GO:0032040: small-subunit processome	9.50E-04
16	GO:0031969: chloroplast membrane	1.94E-03
17	GO:0010319: stromule	2.96E-03
18	GO:0019005: SCF ubiquitin ligase complex	3.84E-03
19	GO:0000502: proteasome complex	6.59E-03
20	GO:0005886: plasma membrane	7.35E-03
21	GO:0048046: apoplast	7.58E-03
22	GO:0009706: chloroplast inner membrane	8.42E-03
23	GO:0005768: endosome	9.12E-03
24	GO:0009570: chloroplast stroma	1.60E-02
25	GO:0016020: membrane	2.87E-02
26	GO:0005618: cell wall	4.03E-02