co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0016236: macroautophagy	0.00E+00
3	GO:0009991: response to extracellular stimulus	0.00E+00
4	GO:0009867: jasmonic acid mediated signaling pathway	3.17E-06
5	GO:0010265: SCF complex assembly	1.48E-05
6	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.48E-05
7	GO:0030242: pexophagy	1.48E-05
8	GO:0000303: response to superoxide	1.48E-05
9	GO:2000377: regulation of reactive oxygen species metabolic process	2.10E-05
10	GO:0007584: response to nutrient	3.88E-05
11	GO:0042325: regulation of phosphorylation	3.88E-05
12	GO:0031648: protein destabilization	3.88E-05
13	GO:0050994: regulation of lipid catabolic process	3.88E-05
14	GO:1900055: regulation of leaf senescence	6.95E-05
15	GO:0006809: nitric oxide biosynthetic process	1.05E-04
16	GO:0048194: Golgi vesicle budding	1.05E-04
17	GO:0010107: potassium ion import	1.45E-04
18	GO:0045324: late endosome to vacuole transport	1.45E-04
19	GO:0006542: glutamine biosynthetic process	1.45E-04
20	GO:0046686: response to cadmium ion	2.02E-04
21	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.60E-04
22	GO:0009846: pollen germination	2.70E-04
23	GO:0030968: endoplasmic reticulum unfolded protein response	4.37E-04
24	GO:2000280: regulation of root development	5.49E-04
25	GO:0072593: reactive oxygen species metabolic process	6.67E-04
26	GO:0006790: sulfur compound metabolic process	7.29E-04
27	GO:0012501: programmed cell death	7.29E-04
28	GO:0010102: lateral root morphogenesis	7.91E-04
29	GO:0055046: microgametogenesis	7.91E-04
30	GO:0009887: animal organ morphogenesis	8.55E-04
31	GO:0046854: phosphatidylinositol phosphorylation	9.19E-04
32	GO:0007049: cell cycle	1.17E-03
33	GO:0009723: response to ethylene	1.21E-03
34	GO:0031348: negative regulation of defense response	1.26E-03
35	GO:0009561: megagametogenesis	1.41E-03
36	GO:0006817: phosphate ion transport	1.41E-03
37	GO:0010087: phloem or xylem histogenesis	1.57E-03
38	GO:0010118: stomatal movement	1.57E-03
39	GO:0010154: fruit development	1.65E-03
40	GO:0042752: regulation of circadian rhythm	1.73E-03
41	GO:0006623: protein targeting to vacuole	1.81E-03
42	GO:0010193: response to ozone	1.89E-03
43	GO:0006635: fatty acid beta-oxidation	1.89E-03
44	GO:0048364: root development	1.97E-03
45	GO:0016032: viral process	1.98E-03
46	GO:0006468: protein phosphorylation	2.37E-03
47	GO:0009873: ethylene-activated signaling pathway	2.42E-03
48	GO:0010029: regulation of seed germination	2.52E-03
49	GO:0009816: defense response to bacterium, incompatible interaction	2.52E-03
50	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.52E-03
51	GO:0042128: nitrate assimilation	2.61E-03
52	GO:0016311: dephosphorylation	2.80E-03
53	GO:0009817: defense response to fungus, incompatible interaction	2.90E-03
54	GO:0048767: root hair elongation	3.00E-03
55	GO:0048527: lateral root development	3.20E-03
56	GO:0006631: fatty acid metabolic process	3.82E-03
57	GO:0000209: protein polyubiquitination	4.15E-03
58	GO:0051603: proteolysis involved in cellular protein catabolic process	5.07E-03
59	GO:0006096: glycolytic process	5.55E-03
60	GO:0048367: shoot system development	5.68E-03
61	GO:0009414: response to water deprivation	6.50E-03
62	GO:0051726: regulation of cell cycle	6.57E-03
63	GO:0009845: seed germination	7.79E-03
64	GO:0009790: embryo development	8.21E-03
65	GO:0016036: cellular response to phosphate starvation	8.79E-03
66	GO:0010150: leaf senescence	9.23E-03
67	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.99E-03
68	GO:0006970: response to osmotic stress	1.32E-02
69	GO:0009860: pollen tube growth	1.32E-02
70	GO:0048366: leaf development	1.41E-02
71	GO:0009737: response to abscisic acid	1.42E-02
72	GO:0009793: embryo development ending in seed dormancy	1.55E-02
73	GO:0016042: lipid catabolic process	1.89E-02
74	GO:0006629: lipid metabolic process	1.93E-02
75	GO:0050832: defense response to fungus	1.99E-02
76	GO:0009753: response to jasmonic acid	2.02E-02
77	GO:0009734: auxin-activated signaling pathway	2.46E-02
78	GO:0009738: abscisic acid-activated signaling pathway	2.83E-02
79	GO:0009555: pollen development	2.90E-02
80	GO:0035556: intracellular signal transduction	3.01E-02
81	GO:0051301: cell division	3.08E-02
82	GO:0055085: transmembrane transport	3.44E-02
83	GO:0006511: ubiquitin-dependent protein catabolic process	3.61E-02
84	GO:0006979: response to oxidative stress	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0005548: phospholipid transporter activity	0.00E+00
5	GO:0070577: lysine-acetylated histone binding	0.00E+00
6	GO:0005496: steroid binding	6.15E-07
7	GO:0004012: phospholipid-translocating ATPase activity	1.43E-06
8	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.19E-05
9	GO:0019707: protein-cysteine S-acyltransferase activity	1.48E-05
10	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.48E-05
11	GO:0015036: disulfide oxidoreductase activity	3.88E-05
12	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.88E-05
13	GO:0000287: magnesium ion binding	6.82E-05
14	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.95E-05
15	GO:0016805: dipeptidase activity	6.95E-05
16	GO:0061630: ubiquitin protein ligase activity	1.04E-04
17	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.05E-04
18	GO:0004300: enoyl-CoA hydratase activity	1.05E-04
19	GO:0070628: proteasome binding	1.45E-04
20	GO:0003995: acyl-CoA dehydrogenase activity	1.45E-04
21	GO:0004356: glutamate-ammonia ligase activity	1.88E-04
22	GO:0004674: protein serine/threonine kinase activity	1.99E-04
23	GO:0005524: ATP binding	2.28E-04
24	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.82E-04
25	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.82E-04
26	GO:0008235: metalloexopeptidase activity	3.32E-04
27	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.84E-04
28	GO:0005267: potassium channel activity	4.37E-04
29	GO:0030955: potassium ion binding	5.49E-04
30	GO:0004743: pyruvate kinase activity	5.49E-04
31	GO:0004177: aminopeptidase activity	6.67E-04
32	GO:0005315: inorganic phosphate transmembrane transporter activity	7.91E-04
33	GO:0019888: protein phosphatase regulator activity	7.91E-04
34	GO:0015114: phosphate ion transmembrane transporter activity	7.91E-04
35	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.19E-03
36	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-03
37	GO:0005515: protein binding	1.72E-03
38	GO:0004806: triglyceride lipase activity	2.70E-03
39	GO:0030145: manganese ion binding	3.20E-03
40	GO:0003993: acid phosphatase activity	3.50E-03
41	GO:0015293: symporter activity	4.37E-03
42	GO:0031625: ubiquitin protein ligase binding	5.31E-03
43	GO:0016301: kinase activity	7.68E-03
44	GO:0015144: carbohydrate transmembrane transporter activity	8.35E-03
45	GO:0016491: oxidoreductase activity	8.77E-03
46	GO:0005351: sugar:proton symporter activity	9.08E-03
47	GO:0004842: ubiquitin-protein transferase activity	9.21E-03
48	GO:0004672: protein kinase activity	9.79E-03
49	GO:0042802: identical protein binding	1.09E-02
50	GO:0050660: flavin adenine dinucleotide binding	1.39E-02
51	GO:0016787: hydrolase activity	1.43E-02
52	GO:0004871: signal transducer activity	1.72E-02
53	GO:0004722: protein serine/threonine phosphatase activity	1.77E-02
54	GO:0003924: GTPase activity	1.93E-02
55	GO:0016887: ATPase activity	2.63E-02
56	GO:0000166: nucleotide binding	2.90E-02
57	GO:0005507: copper ion binding	3.73E-02
58	GO:0005516: calmodulin binding	3.88E-02
59	GO:0005509: calcium ion binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0071561: nucleus-vacuole junction	0.00E+00
2	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	1.48E-05
3	GO:0000138: Golgi trans cisterna	1.48E-05
4	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	1.48E-05
5	GO:0031314: extrinsic component of mitochondrial inner membrane	3.88E-05
6	GO:0005886: plasma membrane	4.46E-05
7	GO:0005829: cytosol	7.67E-05
8	GO:0031461: cullin-RING ubiquitin ligase complex	1.05E-04
9	GO:0000151: ubiquitin ligase complex	1.27E-04
10	GO:0005819: spindle	1.79E-04
11	GO:0016363: nuclear matrix	2.82E-04
12	GO:0000794: condensed nuclear chromosome	3.32E-04
13	GO:0005777: peroxisome	4.33E-04
14	GO:0009514: glyoxysome	4.37E-04
15	GO:0005794: Golgi apparatus	4.58E-04
16	GO:0005737: cytoplasm	4.75E-04
17	GO:0009524: phragmoplast	5.39E-04
18	GO:0005802: trans-Golgi network	6.58E-04
19	GO:0005769: early endosome	9.85E-04
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.15E-03
21	GO:0005839: proteasome core complex	1.19E-03
22	GO:0005770: late endosome	1.65E-03
23	GO:0005643: nuclear pore	2.90E-03
24	GO:0022626: cytosolic ribosome	3.17E-03
25	GO:0031902: late endosome membrane	3.82E-03
26	GO:0005635: nuclear envelope	5.19E-03
27	GO:0009506: plasmodesma	5.35E-03
28	GO:0005834: heterotrimeric G-protein complex	5.80E-03
29	GO:0005768: endosome	5.99E-03
30	GO:0005789: endoplasmic reticulum membrane	1.02E-02
31	GO:0005730: nucleolus	1.13E-02
32	GO:0005743: mitochondrial inner membrane	1.83E-02
33	GO:0005887: integral component of plasma membrane	2.40E-02
34	GO:0005618: cell wall	2.65E-02
35	GO:0005773: vacuole	3.55E-02