Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G00490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080094: response to trehalose-6-phosphate0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
4GO:0009946: proximal/distal axis specification0.00E+00
5GO:0009264: deoxyribonucleotide catabolic process0.00E+00
6GO:0015822: ornithine transport0.00E+00
7GO:0010336: gibberellic acid homeostasis0.00E+00
8GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
9GO:0009813: flavonoid biosynthetic process8.92E-08
10GO:0019253: reductive pentose-phosphate cycle8.62E-07
11GO:0080167: response to karrikin8.36E-06
12GO:0051555: flavonol biosynthetic process1.58E-05
13GO:0006559: L-phenylalanine catabolic process9.17E-05
14GO:0010076: maintenance of floral meristem identity1.27E-04
15GO:0016117: carotenoid biosynthetic process1.47E-04
16GO:0045489: pectin biosynthetic process1.84E-04
17GO:0071555: cell wall organization1.91E-04
18GO:1901349: glucosinolate transport2.36E-04
19GO:0090449: phloem glucosinolate loading2.36E-04
20GO:0006659: phosphatidylserine biosynthetic process2.36E-04
21GO:0019605: butyrate metabolic process2.36E-04
22GO:0006083: acetate metabolic process2.36E-04
23GO:0048438: floral whorl development2.36E-04
24GO:0000066: mitochondrial ornithine transport2.36E-04
25GO:0019510: S-adenosylhomocysteine catabolic process2.36E-04
26GO:0006169: adenosine salvage2.36E-04
27GO:0006096: glycolytic process2.77E-04
28GO:0009698: phenylpropanoid metabolic process5.11E-04
29GO:0019388: galactose catabolic process5.24E-04
30GO:0033353: S-adenosylmethionine cycle5.24E-04
31GO:0010220: positive regulation of vernalization response5.24E-04
32GO:0015712: hexose phosphate transport5.24E-04
33GO:0030388: fructose 1,6-bisphosphate metabolic process5.24E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly5.24E-04
35GO:0009629: response to gravity5.24E-04
36GO:0046686: response to cadmium ion6.01E-04
37GO:0010218: response to far red light6.43E-04
38GO:0006006: glucose metabolic process6.63E-04
39GO:0009767: photosynthetic electron transport chain6.63E-04
40GO:0006000: fructose metabolic process8.52E-04
41GO:0035436: triose phosphate transmembrane transport8.52E-04
42GO:0010253: UDP-rhamnose biosynthetic process8.52E-04
43GO:0046417: chorismate metabolic process8.52E-04
44GO:0044375: regulation of peroxisome size8.52E-04
45GO:0006651: diacylglycerol biosynthetic process8.52E-04
46GO:0010338: leaf formation8.52E-04
47GO:0008152: metabolic process1.12E-03
48GO:0009590: detection of gravity1.21E-03
49GO:0009963: positive regulation of flavonoid biosynthetic process1.21E-03
50GO:0042823: pyridoxal phosphate biosynthetic process1.21E-03
51GO:0006572: tyrosine catabolic process1.21E-03
52GO:0009052: pentose-phosphate shunt, non-oxidative branch1.21E-03
53GO:0009411: response to UV1.47E-03
54GO:0010224: response to UV-B1.59E-03
55GO:0006546: glycine catabolic process1.62E-03
56GO:0006021: inositol biosynthetic process1.62E-03
57GO:0015713: phosphoglycerate transport1.62E-03
58GO:0034613: cellular protein localization1.62E-03
59GO:0009694: jasmonic acid metabolic process1.62E-03
60GO:0006542: glutamine biosynthetic process1.62E-03
61GO:0019676: ammonia assimilation cycle1.62E-03
62GO:0048442: sepal development1.62E-03
63GO:0019464: glycine decarboxylation via glycine cleavage system1.62E-03
64GO:0009765: photosynthesis, light harvesting1.62E-03
65GO:0045088: regulation of innate immune response1.62E-03
66GO:0009909: regulation of flower development1.73E-03
67GO:0006520: cellular amino acid metabolic process2.00E-03
68GO:0019408: dolichol biosynthetic process2.07E-03
69GO:0010236: plastoquinone biosynthetic process2.07E-03
70GO:0016120: carotene biosynthetic process2.07E-03
71GO:0006097: glyoxylate cycle2.07E-03
72GO:0016123: xanthophyll biosynthetic process2.07E-03
73GO:0044209: AMP salvage2.07E-03
74GO:0016094: polyprenol biosynthetic process2.07E-03
75GO:0019252: starch biosynthetic process2.31E-03
76GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.47E-03
77GO:0010315: auxin efflux2.55E-03
78GO:0009643: photosynthetic acclimation2.55E-03
79GO:0000060: protein import into nucleus, translocation2.55E-03
80GO:0010304: PSII associated light-harvesting complex II catabolic process2.55E-03
81GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.55E-03
82GO:0070814: hydrogen sulfide biosynthetic process2.55E-03
83GO:0006796: phosphate-containing compound metabolic process2.55E-03
84GO:0006458: 'de novo' protein folding3.06E-03
85GO:0017148: negative regulation of translation3.06E-03
86GO:0042026: protein refolding3.06E-03
87GO:0009094: L-phenylalanine biosynthetic process3.06E-03
88GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.06E-03
89GO:0010077: maintenance of inflorescence meristem identity3.06E-03
90GO:0030154: cell differentiation3.08E-03
91GO:0098869: cellular oxidant detoxification3.61E-03
92GO:0008610: lipid biosynthetic process4.19E-03
93GO:0005978: glycogen biosynthetic process4.19E-03
94GO:0048573: photoperiodism, flowering4.19E-03
95GO:0031540: regulation of anthocyanin biosynthetic process4.19E-03
96GO:0052543: callose deposition in cell wall4.19E-03
97GO:0016559: peroxisome fission4.19E-03
98GO:0007155: cell adhesion4.19E-03
99GO:0018298: protein-chromophore linkage4.64E-03
100GO:0048193: Golgi vesicle transport4.79E-03
101GO:0006002: fructose 6-phosphate metabolic process4.79E-03
102GO:0022900: electron transport chain4.79E-03
103GO:0010119: regulation of stomatal movement5.36E-03
104GO:0048589: developmental growth5.43E-03
105GO:0009056: catabolic process5.43E-03
106GO:0009739: response to gibberellin5.49E-03
107GO:0006810: transport5.55E-03
108GO:0016051: carbohydrate biosynthetic process5.87E-03
109GO:0005975: carbohydrate metabolic process5.92E-03
110GO:0010018: far-red light signaling pathway6.09E-03
111GO:0008356: asymmetric cell division6.09E-03
112GO:0009970: cellular response to sulfate starvation6.78E-03
113GO:0000103: sulfate assimilation6.78E-03
114GO:0048441: petal development6.78E-03
115GO:0010192: mucilage biosynthetic process6.78E-03
116GO:0009073: aromatic amino acid family biosynthetic process7.50E-03
117GO:0048229: gametophyte development7.50E-03
118GO:0019684: photosynthesis, light reaction7.50E-03
119GO:0010114: response to red light7.57E-03
120GO:0009926: auxin polar transport7.57E-03
121GO:0009744: response to sucrose7.57E-03
122GO:0042546: cell wall biogenesis7.88E-03
123GO:0010582: floral meristem determinacy8.25E-03
124GO:0016925: protein sumoylation8.25E-03
125GO:0006094: gluconeogenesis9.02E-03
126GO:0005986: sucrose biosynthetic process9.02E-03
127GO:0000165: MAPK cascade9.17E-03
128GO:0048440: carpel development9.82E-03
129GO:0010020: chloroplast fission9.82E-03
130GO:0010223: secondary shoot formation9.82E-03
131GO:0009934: regulation of meristem structural organization9.82E-03
132GO:0009416: response to light stimulus1.00E-02
133GO:0009611: response to wounding1.03E-02
134GO:0009225: nucleotide-sugar metabolic process1.06E-02
135GO:0007031: peroxisome organization1.06E-02
136GO:0042343: indole glucosinolate metabolic process1.06E-02
137GO:0009733: response to auxin1.08E-02
138GO:0006857: oligopeptide transport1.10E-02
139GO:0009833: plant-type primary cell wall biogenesis1.15E-02
140GO:0006833: water transport1.15E-02
141GO:0007010: cytoskeleton organization1.24E-02
142GO:0006487: protein N-linked glycosylation1.24E-02
143GO:0009944: polarity specification of adaxial/abaxial axis1.24E-02
144GO:0009695: jasmonic acid biosynthetic process1.32E-02
145GO:0009768: photosynthesis, light harvesting in photosystem I1.32E-02
146GO:0019953: sexual reproduction1.32E-02
147GO:0006366: transcription from RNA polymerase II promoter1.42E-02
148GO:0098542: defense response to other organism1.42E-02
149GO:0019915: lipid storage1.42E-02
150GO:0061077: chaperone-mediated protein folding1.42E-02
151GO:0031408: oxylipin biosynthetic process1.42E-02
152GO:0006730: one-carbon metabolic process1.51E-02
153GO:0007005: mitochondrion organization1.51E-02
154GO:0040007: growth1.61E-02
155GO:0048443: stamen development1.70E-02
156GO:0042127: regulation of cell proliferation1.70E-02
157GO:0010584: pollen exine formation1.70E-02
158GO:0006629: lipid metabolic process1.79E-02
159GO:0000271: polysaccharide biosynthetic process1.91E-02
160GO:0042335: cuticle development1.91E-02
161GO:0034220: ion transmembrane transport1.91E-02
162GO:0009753: response to jasmonic acid1.96E-02
163GO:0007059: chromosome segregation2.12E-02
164GO:0009791: post-embryonic development2.23E-02
165GO:0008654: phospholipid biosynthetic process2.23E-02
166GO:0055114: oxidation-reduction process2.28E-02
167GO:0006633: fatty acid biosynthetic process2.30E-02
168GO:0071554: cell wall organization or biogenesis2.34E-02
169GO:0016032: viral process2.45E-02
170GO:0007264: small GTPase mediated signal transduction2.45E-02
171GO:0010583: response to cyclopentenone2.45E-02
172GO:0007623: circadian rhythm2.53E-02
173GO:1901657: glycosyl compound metabolic process2.56E-02
174GO:0009828: plant-type cell wall loosening2.68E-02
175GO:0016125: sterol metabolic process2.68E-02
176GO:0051607: defense response to virus2.92E-02
177GO:0009911: positive regulation of flower development3.04E-02
178GO:0009615: response to virus3.04E-02
179GO:0009908: flower development3.24E-02
180GO:0009735: response to cytokinin3.28E-02
181GO:0042128: nitrate assimilation3.29E-02
182GO:0006950: response to stress3.41E-02
183GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.62E-02
184GO:0030244: cellulose biosynthetic process3.67E-02
185GO:0009832: plant-type cell wall biogenesis3.80E-02
186GO:0048767: root hair elongation3.80E-02
187GO:0009407: toxin catabolic process3.93E-02
188GO:0007568: aging4.07E-02
189GO:0009637: response to blue light4.34E-02
190GO:0009853: photorespiration4.34E-02
191GO:0009867: jasmonic acid mediated signaling pathway4.34E-02
192GO:0009723: response to ethylene4.51E-02
193GO:0006839: mitochondrial transport4.76E-02
194GO:0006631: fatty acid metabolic process4.90E-02
RankGO TermAdjusted P value
1GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
2GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
3GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
4GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
5GO:0030795: jasmonate O-methyltransferase activity0.00E+00
6GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
7GO:0102078: methyl jasmonate methylesterase activity0.00E+00
8GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
9GO:0045486: naringenin 3-dioxygenase activity0.00E+00
10GO:1990055: phenylacetaldehyde synthase activity0.00E+00
11GO:0016719: carotene 7,8-desaturase activity0.00E+00
12GO:0016210: naringenin-chalcone synthase activity0.00E+00
13GO:0047213: anthocyanidin 3-O-glucosyltransferase activity0.00E+00
14GO:0016757: transferase activity, transferring glycosyl groups1.25E-06
15GO:0045430: chalcone isomerase activity3.91E-05
16GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.27E-04
17GO:0008194: UDP-glycosyltransferase activity1.70E-04
18GO:0010313: phytochrome binding2.36E-04
19GO:0090448: glucosinolate:proton symporter activity2.36E-04
20GO:0004001: adenosine kinase activity2.36E-04
21GO:0004837: tyrosine decarboxylase activity2.36E-04
22GO:0003987: acetate-CoA ligase activity2.36E-04
23GO:0004013: adenosylhomocysteinase activity2.36E-04
24GO:0047760: butyrate-CoA ligase activity2.36E-04
25GO:0004106: chorismate mutase activity5.24E-04
26GO:0004614: phosphoglucomutase activity5.24E-04
27GO:0000064: L-ornithine transmembrane transporter activity5.24E-04
28GO:0050377: UDP-glucose 4,6-dehydratase activity5.24E-04
29GO:0004512: inositol-3-phosphate synthase activity5.24E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.24E-04
31GO:0048531: beta-1,3-galactosyltransferase activity5.24E-04
32GO:0010291: carotene beta-ring hydroxylase activity5.24E-04
33GO:0016868: intramolecular transferase activity, phosphotransferases5.24E-04
34GO:0004618: phosphoglycerate kinase activity5.24E-04
35GO:0008460: dTDP-glucose 4,6-dehydratase activity5.24E-04
36GO:0004047: aminomethyltransferase activity5.24E-04
37GO:0010280: UDP-L-rhamnose synthase activity5.24E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.24E-04
39GO:0003913: DNA photolyase activity8.52E-04
40GO:0008253: 5'-nucleotidase activity8.52E-04
41GO:0004148: dihydrolipoyl dehydrogenase activity8.52E-04
42GO:0004751: ribose-5-phosphate isomerase activity8.52E-04
43GO:0030267: glyoxylate reductase (NADP) activity8.52E-04
44GO:0004781: sulfate adenylyltransferase (ATP) activity8.52E-04
45GO:0071917: triose-phosphate transmembrane transporter activity8.52E-04
46GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity8.52E-04
47GO:0031418: L-ascorbic acid binding1.02E-03
48GO:0048027: mRNA 5'-UTR binding1.21E-03
49GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.21E-03
50GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.21E-03
51GO:0001872: (1->3)-beta-D-glucan binding1.21E-03
52GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.21E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity1.21E-03
54GO:0051287: NAD binding1.33E-03
55GO:0015120: phosphoglycerate transmembrane transporter activity1.62E-03
56GO:0047769: arogenate dehydratase activity1.62E-03
57GO:0004664: prephenate dehydratase activity1.62E-03
58GO:0046527: glucosyltransferase activity1.62E-03
59GO:0045547: dehydrodolichyl diphosphate synthase activity2.07E-03
60GO:0031386: protein tag2.07E-03
61GO:0004356: glutamate-ammonia ligase activity2.07E-03
62GO:0045431: flavonol synthase activity2.07E-03
63GO:0002094: polyprenyltransferase activity2.07E-03
64GO:0080043: quercetin 3-O-glucosyltransferase activity2.12E-03
65GO:0080044: quercetin 7-O-glucosyltransferase activity2.12E-03
66GO:0016208: AMP binding2.55E-03
67GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.55E-03
68GO:0016688: L-ascorbate peroxidase activity2.55E-03
69GO:0042578: phosphoric ester hydrolase activity2.55E-03
70GO:0080030: methyl indole-3-acetate esterase activity2.55E-03
71GO:0008429: phosphatidylethanolamine binding2.55E-03
72GO:0016759: cellulose synthase activity2.99E-03
73GO:0016758: transferase activity, transferring hexosyl groups3.06E-03
74GO:0008195: phosphatidate phosphatase activity3.06E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.06E-03
76GO:0016597: amino acid binding3.36E-03
77GO:0009881: photoreceptor activity3.61E-03
78GO:0043295: glutathione binding3.61E-03
79GO:0102425: myricetin 3-O-glucosyltransferase activity3.61E-03
80GO:0102360: daphnetin 3-O-glucosyltransferase activity3.61E-03
81GO:0004427: inorganic diphosphatase activity3.61E-03
82GO:0016621: cinnamoyl-CoA reductase activity3.61E-03
83GO:0004714: transmembrane receptor protein tyrosine kinase activity4.19E-03
84GO:0047893: flavonol 3-O-glucosyltransferase activity4.19E-03
85GO:0016207: 4-coumarate-CoA ligase activity5.43E-03
86GO:0030955: potassium ion binding6.09E-03
87GO:0004743: pyruvate kinase activity6.09E-03
88GO:0004860: protein kinase inhibitor activity7.50E-03
89GO:0044183: protein binding involved in protein folding7.50E-03
90GO:0047372: acylglycerol lipase activity7.50E-03
91GO:0046982: protein heterodimerization activity8.11E-03
92GO:0000287: magnesium ion binding8.11E-03
93GO:0008081: phosphoric diester hydrolase activity9.02E-03
94GO:0004175: endopeptidase activity9.82E-03
95GO:0003824: catalytic activity1.04E-02
96GO:0005215: transporter activity1.06E-02
97GO:0031409: pigment binding1.15E-02
98GO:0016787: hydrolase activity1.16E-02
99GO:0001046: core promoter sequence-specific DNA binding1.24E-02
100GO:0052689: carboxylic ester hydrolase activity1.24E-02
101GO:0004650: polygalacturonase activity1.33E-02
102GO:0004176: ATP-dependent peptidase activity1.42E-02
103GO:0035251: UDP-glucosyltransferase activity1.42E-02
104GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.51E-02
105GO:0016760: cellulose synthase (UDP-forming) activity1.61E-02
106GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.88E-02
107GO:0016829: lyase activity1.98E-02
108GO:0030170: pyridoxal phosphate binding2.03E-02
109GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.08E-02
110GO:0016853: isomerase activity2.12E-02
111GO:0005355: glucose transmembrane transporter activity2.12E-02
112GO:0019901: protein kinase binding2.23E-02
113GO:0015297: antiporter activity2.41E-02
114GO:0004518: nuclease activity2.45E-02
115GO:0008483: transaminase activity2.80E-02
116GO:0005200: structural constituent of cytoskeleton2.80E-02
117GO:0008237: metallopeptidase activity2.80E-02
118GO:0016413: O-acetyltransferase activity2.92E-02
119GO:0015250: water channel activity3.04E-02
120GO:0016168: chlorophyll binding3.16E-02
121GO:0008375: acetylglucosaminyltransferase activity3.29E-02
122GO:0030247: polysaccharide binding3.41E-02
123GO:0102483: scopolin beta-glucosidase activity3.41E-02
124GO:0008236: serine-type peptidase activity3.54E-02
125GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.93E-02
126GO:0004222: metalloendopeptidase activity3.93E-02
127GO:0016788: hydrolase activity, acting on ester bonds3.98E-02
128GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.07E-02
129GO:0050897: cobalt ion binding4.07E-02
130GO:0003993: acid phosphatase activity4.48E-02
131GO:0008422: beta-glucosidase activity4.62E-02
132GO:0050661: NADP binding4.76E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009941: chloroplast envelope2.37E-07
4GO:0009507: chloroplast4.04E-07
5GO:0009570: chloroplast stroma9.58E-06
6GO:0009579: thylakoid3.98E-05
7GO:0009535: chloroplast thylakoid membrane1.28E-04
8GO:0010319: stromule3.46E-04
9GO:0045254: pyruvate dehydrogenase complex5.24E-04
10GO:0009543: chloroplast thylakoid lumen5.30E-04
11GO:0030095: chloroplast photosystem II7.46E-04
12GO:0009509: chromoplast8.52E-04
13GO:0042406: extrinsic component of endoplasmic reticulum membrane8.52E-04
14GO:0005794: Golgi apparatus8.67E-04
15GO:0009654: photosystem II oxygen evolving complex1.12E-03
16GO:0005960: glycine cleavage complex1.21E-03
17GO:0031225: anchored component of membrane1.55E-03
18GO:0019898: extrinsic component of membrane2.31E-03
19GO:0000793: condensed chromosome2.55E-03
20GO:0048046: apoplast4.53E-03
21GO:0000139: Golgi membrane4.73E-03
22GO:0005779: integral component of peroxisomal membrane4.79E-03
23GO:0016020: membrane5.64E-03
24GO:0005765: lysosomal membrane7.50E-03
25GO:0005764: lysosome9.82E-03
26GO:0030076: light-harvesting complex1.06E-02
27GO:0031969: chloroplast membrane1.09E-02
28GO:0009536: plastid1.26E-02
29GO:0009534: chloroplast thylakoid1.33E-02
30GO:0009506: plasmodesma1.88E-02
31GO:0043231: intracellular membrane-bounded organelle2.03E-02
32GO:0009522: photosystem I2.12E-02
33GO:0009523: photosystem II2.23E-02
34GO:0005759: mitochondrial matrix2.30E-02
35GO:0009705: plant-type vacuole membrane2.53E-02
36GO:0005778: peroxisomal membrane2.80E-02
37GO:0005886: plasma membrane2.87E-02
38GO:0046658: anchored component of plasma membrane3.34E-02
39GO:0022626: cytosolic ribosome3.47E-02
40GO:0009707: chloroplast outer membrane3.67E-02
41GO:0005819: spindle4.62E-02
42GO:0031902: late endosome membrane4.90E-02
43GO:0031977: thylakoid lumen4.90E-02
Gene type



Gene DE type