Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G00430

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0010336: gibberellic acid homeostasis0.00E+00
4GO:0009715: chalcone biosynthetic process0.00E+00
5GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
6GO:0060416: response to growth hormone0.00E+00
7GO:0090393: sepal giant cell development0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0071370: cellular response to gibberellin stimulus0.00E+00
10GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
11GO:0071554: cell wall organization or biogenesis2.86E-06
12GO:0006546: glycine catabolic process1.59E-05
13GO:0007155: cell adhesion9.51E-05
14GO:0000066: mitochondrial ornithine transport1.40E-04
15GO:0019510: S-adenosylhomocysteine catabolic process1.40E-04
16GO:1901349: glucosinolate transport1.40E-04
17GO:1902265: abscisic acid homeostasis1.40E-04
18GO:0090449: phloem glucosinolate loading1.40E-04
19GO:0006723: cuticle hydrocarbon biosynthetic process1.40E-04
20GO:0006659: phosphatidylserine biosynthetic process1.40E-04
21GO:0030388: fructose 1,6-bisphosphate metabolic process3.20E-04
22GO:0009629: response to gravity3.20E-04
23GO:0033353: S-adenosylmethionine cycle3.20E-04
24GO:0015786: UDP-glucose transport3.20E-04
25GO:0007154: cell communication3.20E-04
26GO:0060919: auxin influx3.20E-04
27GO:0080148: negative regulation of response to water deprivation3.20E-04
28GO:0019253: reductive pentose-phosphate cycle3.63E-04
29GO:0005985: sucrose metabolic process4.07E-04
30GO:0009833: plant-type primary cell wall biogenesis4.54E-04
31GO:0005977: glycogen metabolic process5.26E-04
32GO:0015783: GDP-fucose transport5.26E-04
33GO:0006011: UDP-glucose metabolic process5.26E-04
34GO:0031022: nuclear migration along microfilament5.26E-04
35GO:0006000: fructose metabolic process5.26E-04
36GO:0043447: alkane biosynthetic process5.26E-04
37GO:0006696: ergosterol biosynthetic process5.26E-04
38GO:0044375: regulation of peroxisome size5.26E-04
39GO:0071555: cell wall organization5.89E-04
40GO:0006857: oligopeptide transport6.59E-04
41GO:0080167: response to karrikin7.52E-04
42GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.53E-04
43GO:0006166: purine ribonucleoside salvage7.53E-04
44GO:0072334: UDP-galactose transmembrane transport7.53E-04
45GO:0051016: barbed-end actin filament capping7.53E-04
46GO:0015696: ammonium transport7.53E-04
47GO:0006168: adenine salvage7.53E-04
48GO:0032877: positive regulation of DNA endoreduplication7.53E-04
49GO:0019722: calcium-mediated signaling7.83E-04
50GO:0016117: carotenoid biosynthetic process8.45E-04
51GO:0042335: cuticle development9.10E-04
52GO:0045489: pectin biosynthetic process9.78E-04
53GO:0006542: glutamine biosynthetic process9.98E-04
54GO:0019676: ammonia assimilation cycle9.98E-04
55GO:0019464: glycine decarboxylation via glycine cleavage system9.98E-04
56GO:0009765: photosynthesis, light harvesting9.98E-04
57GO:0072488: ammonium transmembrane transport9.98E-04
58GO:0006021: inositol biosynthetic process9.98E-04
59GO:0006749: glutathione metabolic process9.98E-04
60GO:0009902: chloroplast relocation9.98E-04
61GO:0009694: jasmonic acid metabolic process9.98E-04
62GO:0044209: AMP salvage1.26E-03
63GO:0032876: negative regulation of DNA endoreduplication1.26E-03
64GO:0016120: carotene biosynthetic process1.26E-03
65GO:0010236: plastoquinone biosynthetic process1.26E-03
66GO:0007267: cell-cell signaling1.53E-03
67GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.55E-03
68GO:0045962: positive regulation of development, heterochronic1.55E-03
69GO:0009635: response to herbicide1.55E-03
70GO:0010942: positive regulation of cell death1.55E-03
71GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.86E-03
72GO:0045926: negative regulation of growth1.86E-03
73GO:0017148: negative regulation of translation1.86E-03
74GO:0009903: chloroplast avoidance movement1.86E-03
75GO:0042128: nitrate assimilation1.91E-03
76GO:0009617: response to bacterium2.32E-03
77GO:0052543: callose deposition in cell wall2.52E-03
78GO:0016559: peroxisome fission2.52E-03
79GO:0008610: lipid biosynthetic process2.52E-03
80GO:0009787: regulation of abscisic acid-activated signaling pathway2.52E-03
81GO:0009850: auxin metabolic process2.52E-03
82GO:0009704: de-etiolation2.52E-03
83GO:0045010: actin nucleation2.52E-03
84GO:0031540: regulation of anthocyanin biosynthetic process2.52E-03
85GO:0009637: response to blue light2.81E-03
86GO:0016051: carbohydrate biosynthetic process2.81E-03
87GO:0006002: fructose 6-phosphate metabolic process2.88E-03
88GO:0022900: electron transport chain2.88E-03
89GO:0007389: pattern specification process2.88E-03
90GO:0009056: catabolic process3.26E-03
91GO:0006754: ATP biosynthetic process3.26E-03
92GO:0048589: developmental growth3.26E-03
93GO:0009926: auxin polar transport3.61E-03
94GO:0042546: cell wall biogenesis3.75E-03
95GO:0010192: mucilage biosynthetic process4.06E-03
96GO:0051555: flavonol biosynthetic process4.06E-03
97GO:0048829: root cap development4.06E-03
98GO:0000038: very long-chain fatty acid metabolic process4.48E-03
99GO:0009773: photosynthetic electron transport in photosystem I4.48E-03
100GO:0000272: polysaccharide catabolic process4.48E-03
101GO:0006810: transport4.67E-03
102GO:0015706: nitrate transport4.92E-03
103GO:0005975: carbohydrate metabolic process4.95E-03
104GO:0046686: response to cadmium ion5.18E-03
105GO:0030036: actin cytoskeleton organization5.37E-03
106GO:0050826: response to freezing5.37E-03
107GO:0009725: response to hormone5.37E-03
108GO:0006094: gluconeogenesis5.37E-03
109GO:0005986: sucrose biosynthetic process5.37E-03
110GO:0030048: actin filament-based movement5.37E-03
111GO:0048768: root hair cell tip growth5.84E-03
112GO:0009969: xyloglucan biosynthetic process6.32E-03
113GO:0007031: peroxisome organization6.32E-03
114GO:0009825: multidimensional cell growth6.32E-03
115GO:0010167: response to nitrate6.32E-03
116GO:0010025: wax biosynthetic process6.81E-03
117GO:0009624: response to nematode6.89E-03
118GO:0007010: cytoskeleton organization7.32E-03
119GO:0008299: isoprenoid biosynthetic process7.84E-03
120GO:0009695: jasmonic acid biosynthetic process7.84E-03
121GO:0009768: photosynthesis, light harvesting in photosystem I7.84E-03
122GO:0031408: oxylipin biosynthetic process8.38E-03
123GO:0003333: amino acid transmembrane transport8.38E-03
124GO:0006730: one-carbon metabolic process8.92E-03
125GO:0009294: DNA mediated transformation9.48E-03
126GO:0006633: fatty acid biosynthetic process1.09E-02
127GO:0015991: ATP hydrolysis coupled proton transport1.12E-02
128GO:0000271: polysaccharide biosynthetic process1.12E-02
129GO:0080022: primary root development1.12E-02
130GO:0010051: xylem and phloem pattern formation1.12E-02
131GO:0009741: response to brassinosteroid1.18E-02
132GO:0007623: circadian rhythm1.19E-02
133GO:0045490: pectin catabolic process1.19E-02
134GO:0015986: ATP synthesis coupled proton transport1.25E-02
135GO:0009791: post-embryonic development1.31E-02
136GO:0019252: starch biosynthetic process1.31E-02
137GO:0008654: phospholipid biosynthetic process1.31E-02
138GO:0009738: abscisic acid-activated signaling pathway1.38E-02
139GO:0009416: response to light stimulus1.44E-02
140GO:0010583: response to cyclopentenone1.44E-02
141GO:0019761: glucosinolate biosynthetic process1.44E-02
142GO:0048235: pollen sperm cell differentiation1.44E-02
143GO:0009611: response to wounding1.48E-02
144GO:0016126: sterol biosynthetic process1.79E-02
145GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.86E-02
146GO:0010029: regulation of seed germination1.86E-02
147GO:0009651: response to salt stress1.95E-02
148GO:0007049: cell cycle2.07E-02
149GO:0009817: defense response to fungus, incompatible interaction2.16E-02
150GO:0030244: cellulose biosynthetic process2.16E-02
151GO:0018298: protein-chromophore linkage2.16E-02
152GO:0048767: root hair elongation2.23E-02
153GO:0009813: flavonoid biosynthetic process2.23E-02
154GO:0009832: plant-type cell wall biogenesis2.23E-02
155GO:0010311: lateral root formation2.23E-02
156GO:0009407: toxin catabolic process2.31E-02
157GO:0010218: response to far red light2.31E-02
158GO:0007568: aging2.39E-02
159GO:0048527: lateral root development2.39E-02
160GO:0006865: amino acid transport2.47E-02
161GO:0009853: photorespiration2.55E-02
162GO:0009867: jasmonic acid mediated signaling pathway2.55E-02
163GO:0015979: photosynthesis2.62E-02
164GO:0006839: mitochondrial transport2.80E-02
165GO:0006631: fatty acid metabolic process2.88E-02
166GO:0009744: response to sucrose3.06E-02
167GO:0010114: response to red light3.06E-02
168GO:0032259: methylation3.25E-02
169GO:0009636: response to toxic substance3.32E-02
170GO:0009965: leaf morphogenesis3.32E-02
171GO:0009753: response to jasmonic acid3.64E-02
172GO:0009809: lignin biosynthetic process3.78E-02
173GO:0010224: response to UV-B3.87E-02
174GO:0006096: glycolytic process4.26E-02
175GO:0048367: shoot system development4.35E-02
176GO:0055114: oxidation-reduction process4.71E-02
177GO:0042545: cell wall modification4.75E-02
178GO:0009734: auxin-activated signaling pathway4.75E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0050281: serine-glyoxylate transaminase activity0.00E+00
3GO:0016719: carotene 7,8-desaturase activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
7GO:0004760: serine-pyruvate transaminase activity0.00E+00
8GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0030795: jasmonate O-methyltransferase activity0.00E+00
11GO:0102078: methyl jasmonate methylesterase activity0.00E+00
12GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
13GO:0016413: O-acetyltransferase activity5.71E-06
14GO:0016757: transferase activity, transferring glycosyl groups3.73E-05
15GO:0030797: 24-methylenesterol C-methyltransferase activity1.40E-04
16GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.40E-04
17GO:0004013: adenosylhomocysteinase activity1.40E-04
18GO:0052638: indole-3-butyrate beta-glucosyltransferase activity1.40E-04
19GO:0051996: squalene synthase activity1.40E-04
20GO:0010313: phytochrome binding1.40E-04
21GO:0090448: glucosinolate:proton symporter activity1.40E-04
22GO:0004575: sucrose alpha-glucosidase activity1.76E-04
23GO:0004618: phosphoglycerate kinase activity3.20E-04
24GO:0004047: aminomethyltransferase activity3.20E-04
25GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity3.20E-04
26GO:0050347: trans-octaprenyltranstransferase activity3.20E-04
27GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.20E-04
28GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity3.20E-04
29GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity3.20E-04
30GO:0000064: L-ornithine transmembrane transporter activity3.20E-04
31GO:0004512: inositol-3-phosphate synthase activity3.20E-04
32GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity3.20E-04
33GO:0048531: beta-1,3-galactosyltransferase activity3.20E-04
34GO:0004310: farnesyl-diphosphate farnesyltransferase activity3.20E-04
35GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.54E-04
36GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.54E-04
37GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.54E-04
38GO:0005457: GDP-fucose transmembrane transporter activity5.26E-04
39GO:0070330: aromatase activity5.26E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity5.26E-04
41GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity5.26E-04
42GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity5.26E-04
43GO:0004375: glycine dehydrogenase (decarboxylating) activity7.53E-04
44GO:0048027: mRNA 5'-UTR binding7.53E-04
45GO:0003999: adenine phosphoribosyltransferase activity7.53E-04
46GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity7.53E-04
47GO:0005460: UDP-glucose transmembrane transporter activity7.53E-04
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.98E-04
49GO:0008453: alanine-glyoxylate transaminase activity9.98E-04
50GO:0010328: auxin influx transmembrane transporter activity9.98E-04
51GO:0016758: transferase activity, transferring hexosyl groups1.20E-03
52GO:0004356: glutamate-ammonia ligase activity1.26E-03
53GO:0005459: UDP-galactose transmembrane transporter activity1.26E-03
54GO:0018685: alkane 1-monooxygenase activity1.26E-03
55GO:0008519: ammonium transmembrane transporter activity1.55E-03
56GO:0000210: NAD+ diphosphatase activity1.55E-03
57GO:0102229: amylopectin maltohydrolase activity1.55E-03
58GO:0042578: phosphoric ester hydrolase activity1.55E-03
59GO:0051753: mannan synthase activity1.86E-03
60GO:0016161: beta-amylase activity1.86E-03
61GO:0008194: UDP-glycosyltransferase activity2.14E-03
62GO:0016621: cinnamoyl-CoA reductase activity2.18E-03
63GO:0004564: beta-fructofuranosidase activity2.52E-03
64GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism3.26E-03
65GO:0015112: nitrate transmembrane transporter activity3.65E-03
66GO:0015293: symporter activity4.05E-03
67GO:0004860: protein kinase inhibitor activity4.48E-03
68GO:0046961: proton-transporting ATPase activity, rotational mechanism4.48E-03
69GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.90E-03
70GO:0008378: galactosyltransferase activity4.92E-03
71GO:0004565: beta-galactosidase activity5.37E-03
72GO:0042973: glucan endo-1,3-beta-D-glucosidase activity5.84E-03
73GO:0080043: quercetin 3-O-glucosyltransferase activity6.30E-03
74GO:0080044: quercetin 7-O-glucosyltransferase activity6.30E-03
75GO:0031409: pigment binding6.81E-03
76GO:0051087: chaperone binding7.84E-03
77GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity8.92E-03
78GO:0016760: cellulose synthase (UDP-forming) activity9.48E-03
79GO:0030570: pectate lyase activity9.48E-03
80GO:0004499: N,N-dimethylaniline monooxygenase activity1.01E-02
81GO:0005215: transporter activity1.09E-02
82GO:0008080: N-acetyltransferase activity1.18E-02
83GO:0004872: receptor activity1.31E-02
84GO:0019901: protein kinase binding1.31E-02
85GO:0048038: quinone binding1.37E-02
86GO:0004518: nuclease activity1.44E-02
87GO:0051015: actin filament binding1.51E-02
88GO:0016759: cellulose synthase activity1.58E-02
89GO:0008483: transaminase activity1.64E-02
90GO:0005200: structural constituent of cytoskeleton1.64E-02
91GO:0004672: protein kinase activity1.67E-02
92GO:0016168: chlorophyll binding1.86E-02
93GO:0030247: polysaccharide binding2.00E-02
94GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.08E-02
95GO:0030246: carbohydrate binding2.09E-02
96GO:0050660: flavin adenine dinucleotide binding2.14E-02
97GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.31E-02
98GO:0050897: cobalt ion binding2.39E-02
99GO:0052689: carboxylic ester hydrolase activity2.54E-02
100GO:0050661: NADP binding2.80E-02
101GO:0004871: signal transducer activity2.88E-02
102GO:0004364: glutathione transferase activity2.97E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding3.23E-02
104GO:0051287: NAD binding3.50E-02
105GO:0003824: catalytic activity3.90E-02
106GO:0015171: amino acid transmembrane transporter activity4.06E-02
107GO:0045330: aspartyl esterase activity4.06E-02
108GO:0030599: pectinesterase activity4.65E-02
109GO:0022857: transmembrane transporter activity4.65E-02
110GO:0003779: actin binding4.75E-02
111GO:0016746: transferase activity, transferring acyl groups4.95E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0005794: Golgi apparatus8.39E-09
3GO:0005775: vacuolar lumen8.48E-06
4GO:0000139: Golgi membrane5.02E-05
5GO:0016021: integral component of membrane1.14E-04
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.47E-04
7GO:0048046: apoplast2.11E-04
8GO:0009505: plant-type cell wall2.19E-04
9GO:0016020: membrane2.22E-04
10GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain3.20E-04
11GO:0009509: chromoplast5.26E-04
12GO:0005960: glycine cleavage complex7.53E-04
13GO:0009507: chloroplast2.41E-03
14GO:0009506: plasmodesma2.44E-03
15GO:0000325: plant-type vacuole2.56E-03
16GO:0046658: anchored component of plasma membrane2.64E-03
17GO:0005779: integral component of peroxisomal membrane2.88E-03
18GO:0009570: chloroplast stroma3.03E-03
19GO:0009941: chloroplast envelope4.18E-03
20GO:0009579: thylakoid4.22E-03
21GO:0048471: perinuclear region of cytoplasm4.48E-03
22GO:0019013: viral nucleocapsid5.37E-03
23GO:0005886: plasma membrane5.39E-03
24GO:0031225: anchored component of membrane6.31E-03
25GO:0030076: light-harvesting complex6.32E-03
26GO:0005753: mitochondrial proton-transporting ATP synthase complex6.32E-03
27GO:0010287: plastoglobule8.18E-03
28GO:0009522: photosystem I1.25E-02
29GO:0009523: photosystem II1.31E-02
30GO:0005773: vacuole1.55E-02
31GO:0005778: peroxisomal membrane1.64E-02
32GO:0009534: chloroplast thylakoid1.83E-02
33GO:0005618: cell wall2.59E-02
34GO:0005802: trans-Golgi network2.60E-02
35GO:0031902: late endosome membrane2.88E-02
36GO:0005768: endosome3.05E-02
37GO:0009535: chloroplast thylakoid membrane3.12E-02
38GO:0005856: cytoskeleton3.32E-02
39GO:0043231: intracellular membrane-bounded organelle3.74E-02
40GO:0005747: mitochondrial respiratory chain complex I4.35E-02
Gene type



Gene DE type