co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042371: vitamin K biosynthetic process	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0034337: RNA folding	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090470: shoot organ boundary specification	0.00E+00
7	GO:0061635: regulation of protein complex stability	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:0006642: triglyceride mobilization	0.00E+00
11	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
12	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
13	GO:0015979: photosynthesis	3.60E-14
14	GO:0032544: plastid translation	4.31E-14
15	GO:0009658: chloroplast organization	3.08E-11
16	GO:0010027: thylakoid membrane organization	1.01E-10
17	GO:0006412: translation	1.59E-08
18	GO:0010196: nonphotochemical quenching	6.52E-08
19	GO:0042254: ribosome biogenesis	1.61E-07
20	GO:0042549: photosystem II stabilization	2.43E-06
21	GO:0071482: cellular response to light stimulus	1.46E-05
22	GO:0090391: granum assembly	1.77E-05
23	GO:0009735: response to cytokinin	8.18E-05
24	GO:0010207: photosystem II assembly	8.27E-05
25	GO:0015995: chlorophyll biosynthetic process	1.03E-04
26	GO:0010236: plastoquinone biosynthetic process	1.10E-04
27	GO:0045038: protein import into chloroplast thylakoid membrane	1.10E-04
28	GO:0031365: N-terminal protein amino acid modification	1.10E-04
29	GO:1901259: chloroplast rRNA processing	2.15E-04
30	GO:0009772: photosynthetic electron transport in photosystem II	2.80E-04
31	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.80E-04
32	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	3.32E-04
33	GO:0000481: maturation of 5S rRNA	3.32E-04
34	GO:1904964: positive regulation of phytol biosynthetic process	3.32E-04
35	GO:0043686: co-translational protein modification	3.32E-04
36	GO:0071588: hydrogen peroxide mediated signaling pathway	3.32E-04
37	GO:0070509: calcium ion import	3.32E-04
38	GO:0007263: nitric oxide mediated signal transduction	3.32E-04
39	GO:0043489: RNA stabilization	3.32E-04
40	GO:1904966: positive regulation of vitamin E biosynthetic process	3.32E-04
41	GO:0048564: photosystem I assembly	3.52E-04
42	GO:0006353: DNA-templated transcription, termination	3.52E-04
43	GO:0009662: etioplast organization	7.24E-04
44	GO:0001736: establishment of planar polarity	7.24E-04
45	GO:0006568: tryptophan metabolic process	7.24E-04
46	GO:0010024: phytochromobilin biosynthetic process	7.24E-04
47	GO:0010270: photosystem II oxygen evolving complex assembly	7.24E-04
48	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.24E-04
49	GO:0045717: negative regulation of fatty acid biosynthetic process	7.24E-04
50	GO:0034755: iron ion transmembrane transport	7.24E-04
51	GO:0018026: peptidyl-lysine monomethylation	7.24E-04
52	GO:0006352: DNA-templated transcription, initiation	8.23E-04
53	GO:0009773: photosynthetic electron transport in photosystem I	8.23E-04
54	GO:0009073: aromatic amino acid family biosynthetic process	8.23E-04
55	GO:0043085: positive regulation of catalytic activity	8.23E-04
56	GO:0018298: protein-chromophore linkage	1.05E-03
57	GO:0006006: glucose metabolic process	1.06E-03
58	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.17E-03
59	GO:0032504: multicellular organism reproduction	1.17E-03
60	GO:0006954: inflammatory response	1.17E-03
61	GO:0019563: glycerol catabolic process	1.17E-03
62	GO:0010581: regulation of starch biosynthetic process	1.17E-03
63	GO:0006518: peptide metabolic process	1.17E-03
64	GO:0006788: heme oxidation	1.17E-03
65	GO:0019253: reductive pentose-phosphate cycle	1.19E-03
66	GO:0016556: mRNA modification	1.68E-03
67	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.68E-03
68	GO:2001141: regulation of RNA biosynthetic process	1.68E-03
69	GO:0010371: regulation of gibberellin biosynthetic process	1.68E-03
70	GO:0009152: purine ribonucleotide biosynthetic process	1.68E-03
71	GO:0046653: tetrahydrofolate metabolic process	1.68E-03
72	GO:0010239: chloroplast mRNA processing	1.68E-03
73	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.68E-03
74	GO:0019048: modulation by virus of host morphology or physiology	1.68E-03
75	GO:0031048: chromatin silencing by small RNA	1.68E-03
76	GO:0009768: photosynthesis, light harvesting in photosystem I	1.82E-03
77	GO:0071483: cellular response to blue light	2.26E-03
78	GO:0045727: positive regulation of translation	2.26E-03
79	GO:0015994: chlorophyll metabolic process	2.26E-03
80	GO:0051567: histone H3-K9 methylation	2.26E-03
81	GO:0042991: transcription factor import into nucleus	2.26E-03
82	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.38E-03
83	GO:0006564: L-serine biosynthetic process	2.89E-03
84	GO:0006461: protein complex assembly	2.89E-03
85	GO:0080022: primary root development	3.03E-03
86	GO:0000413: protein peptidyl-prolyl isomerization	3.03E-03
87	GO:0016458: gene silencing	3.57E-03
88	GO:0042793: transcription from plastid promoter	3.57E-03
89	GO:0010190: cytochrome b6f complex assembly	3.57E-03
90	GO:0006828: manganese ion transport	3.57E-03
91	GO:0010189: vitamin E biosynthetic process	4.30E-03
92	GO:0010019: chloroplast-nucleus signaling pathway	4.30E-03
93	GO:0042372: phylloquinone biosynthetic process	4.30E-03
94	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.30E-03
95	GO:0009828: plant-type cell wall loosening	4.88E-03
96	GO:0006400: tRNA modification	5.07E-03
97	GO:0009645: response to low light intensity stimulus	5.07E-03
98	GO:0032508: DNA duplex unwinding	5.89E-03
99	GO:0045292: mRNA cis splicing, via spliceosome	5.89E-03
100	GO:0030091: protein repair	5.89E-03
101	GO:0042255: ribosome assembly	5.89E-03
102	GO:0006605: protein targeting	5.89E-03
103	GO:0045454: cell redox homeostasis	6.50E-03
104	GO:0019430: removal of superoxide radicals	6.76E-03
105	GO:0009657: plastid organization	6.76E-03
106	GO:0000373: Group II intron splicing	7.67E-03
107	GO:0009051: pentose-phosphate shunt, oxidative branch	7.67E-03
108	GO:0010206: photosystem II repair	7.67E-03
109	GO:0010205: photoinhibition	8.61E-03
110	GO:0010380: regulation of chlorophyll biosynthetic process	8.61E-03
111	GO:0009631: cold acclimation	8.81E-03
112	GO:0009451: RNA modification	9.24E-03
113	GO:0030422: production of siRNA involved in RNA interference	9.61E-03
114	GO:0048829: root cap development	9.61E-03
115	GO:0006949: syncytium formation	9.61E-03
116	GO:0009637: response to blue light	9.66E-03
117	GO:0006457: protein folding	9.71E-03
118	GO:0034599: cellular response to oxidative stress	1.01E-02
119	GO:0006879: cellular iron ion homeostasis	1.06E-02
120	GO:0048765: root hair cell differentiation	1.06E-02
121	GO:0006816: calcium ion transport	1.06E-02
122	GO:0008285: negative regulation of cell proliferation	1.06E-02
123	GO:0006415: translational termination	1.06E-02
124	GO:0016024: CDP-diacylglycerol biosynthetic process	1.17E-02
125	GO:0010114: response to red light	1.25E-02
126	GO:0006094: gluconeogenesis	1.28E-02
127	GO:0009767: photosynthetic electron transport chain	1.28E-02
128	GO:0010628: positive regulation of gene expression	1.28E-02
129	GO:0010143: cutin biosynthetic process	1.40E-02
130	GO:0010020: chloroplast fission	1.40E-02
131	GO:0090351: seedling development	1.51E-02
132	GO:0009664: plant-type cell wall organization	1.57E-02
133	GO:0006636: unsaturated fatty acid biosynthetic process	1.63E-02
134	GO:0006364: rRNA processing	1.69E-02
135	GO:0000027: ribosomal large subunit assembly	1.76E-02
136	GO:0007010: cytoskeleton organization	1.76E-02
137	GO:0010073: meristem maintenance	1.89E-02
138	GO:0006418: tRNA aminoacylation for protein translation	1.89E-02
139	GO:0009695: jasmonic acid biosynthetic process	1.89E-02
140	GO:0006096: glycolytic process	2.00E-02
141	GO:0003333: amino acid transmembrane transport	2.02E-02
142	GO:0006306: DNA methylation	2.02E-02
143	GO:0031408: oxylipin biosynthetic process	2.02E-02
144	GO:0010227: floral organ abscission	2.29E-02
145	GO:0016117: carotenoid biosynthetic process	2.57E-02
146	GO:0008033: tRNA processing	2.72E-02
147	GO:0042335: cuticle development	2.72E-02
148	GO:0042391: regulation of membrane potential	2.72E-02
149	GO:0006662: glycerol ether metabolic process	2.87E-02
150	GO:0006342: chromatin silencing	2.87E-02
151	GO:0009958: positive gravitropism	2.87E-02
152	GO:0007018: microtubule-based movement	3.02E-02
153	GO:0006814: sodium ion transport	3.02E-02
154	GO:0032259: methylation	3.17E-02
155	GO:0048825: cotyledon development	3.18E-02
156	GO:0000302: response to reactive oxygen species	3.33E-02
157	GO:0042744: hydrogen peroxide catabolic process	3.43E-02
158	GO:0009409: response to cold	3.48E-02
159	GO:0032502: developmental process	3.49E-02
160	GO:0009790: embryo development	3.51E-02
161	GO:0030163: protein catabolic process	3.66E-02
162	GO:0071805: potassium ion transmembrane transport	3.99E-02
163	GO:0051607: defense response to virus	4.16E-02
164	GO:0009816: defense response to bacterium, incompatible interaction	4.51E-02
165	GO:0042128: nitrate assimilation	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0046608: carotenoid isomerase activity	0.00E+00
5	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0019843: rRNA binding	2.02E-19
10	GO:0003735: structural constituent of ribosome	3.01E-09
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.29E-07
12	GO:0016851: magnesium chelatase activity	1.92E-07
13	GO:0005528: FK506 binding	5.45E-06
14	GO:0004659: prenyltransferase activity	6.97E-05
15	GO:0001053: plastid sigma factor activity	6.97E-05
16	GO:0016987: sigma factor activity	6.97E-05
17	GO:0008266: poly(U) RNA binding	8.27E-05
18	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	3.32E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.32E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	3.32E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.32E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.32E-04
23	GO:0004807: triose-phosphate isomerase activity	3.32E-04
24	GO:0009496: plastoquinol--plastocyanin reductase activity	3.32E-04
25	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.32E-04
26	GO:0004321: fatty-acyl-CoA synthase activity	3.32E-04
27	GO:0042586: peptide deformylase activity	3.32E-04
28	GO:0045485: omega-6 fatty acid desaturase activity	3.32E-04
29	GO:0005080: protein kinase C binding	3.32E-04
30	GO:0003729: mRNA binding	5.93E-04
31	GO:0008047: enzyme activator activity	7.14E-04
32	GO:0047746: chlorophyllase activity	7.24E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	7.24E-04
34	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.24E-04
35	GO:0016630: protochlorophyllide reductase activity	7.24E-04
36	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.24E-04
37	GO:0016168: chlorophyll binding	8.09E-04
38	GO:0004751: ribose-5-phosphate isomerase activity	1.17E-03
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.17E-03
40	GO:0008864: formyltetrahydrofolate deformylase activity	1.17E-03
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.17E-03
42	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.17E-03
43	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.17E-03
44	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.17E-03
45	GO:0002161: aminoacyl-tRNA editing activity	1.17E-03
46	GO:0031409: pigment binding	1.49E-03
47	GO:0003723: RNA binding	1.54E-03
48	GO:0043023: ribosomal large subunit binding	1.68E-03
49	GO:0008097: 5S rRNA binding	1.68E-03
50	GO:0008508: bile acid:sodium symporter activity	1.68E-03
51	GO:0001872: (1->3)-beta-D-glucan binding	1.68E-03
52	GO:0016149: translation release factor activity, codon specific	1.68E-03
53	GO:0035197: siRNA binding	1.68E-03
54	GO:0015079: potassium ion transmembrane transporter activity	1.82E-03
55	GO:0004392: heme oxygenase (decyclizing) activity	2.26E-03
56	GO:0016279: protein-lysine N-methyltransferase activity	2.26E-03
57	GO:0010011: auxin binding	2.26E-03
58	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.26E-03
59	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.26E-03
60	GO:0010328: auxin influx transmembrane transporter activity	2.26E-03
61	GO:0043495: protein anchor	2.26E-03
62	GO:0003959: NADPH dehydrogenase activity	2.89E-03
63	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.89E-03
64	GO:0004791: thioredoxin-disulfide reductase activity	3.51E-03
65	GO:0050662: coenzyme binding	3.51E-03
66	GO:0016688: L-ascorbate peroxidase activity	3.57E-03
67	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.57E-03
68	GO:0004130: cytochrome-c peroxidase activity	3.57E-03
69	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.57E-03
70	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-03
71	GO:0005242: inward rectifier potassium channel activity	4.30E-03
72	GO:0051920: peroxiredoxin activity	4.30E-03
73	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.30E-03
74	GO:0005261: cation channel activity	4.30E-03
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.59E-03
76	GO:0008235: metalloexopeptidase activity	5.07E-03
77	GO:0019899: enzyme binding	5.07E-03
78	GO:0016209: antioxidant activity	5.89E-03
79	GO:0008312: 7S RNA binding	5.89E-03
80	GO:0043022: ribosome binding	5.89E-03
81	GO:0004033: aldo-keto reductase (NADP) activity	5.89E-03
82	GO:0005509: calcium ion binding	5.95E-03
83	GO:0008236: serine-type peptidase activity	7.23E-03
84	GO:0003747: translation release factor activity	7.67E-03
85	GO:0016207: 4-coumarate-CoA ligase activity	7.67E-03
86	GO:0004222: metalloendopeptidase activity	8.40E-03
87	GO:0005384: manganese ion transmembrane transporter activity	8.61E-03
88	GO:0047617: acyl-CoA hydrolase activity	8.61E-03
89	GO:0005381: iron ion transmembrane transporter activity	8.61E-03
90	GO:0004177: aminopeptidase activity	1.06E-02
91	GO:0015386: potassium:proton antiporter activity	1.06E-02
92	GO:0050661: NADP binding	1.10E-02
93	GO:0004521: endoribonuclease activity	1.17E-02
94	GO:0000049: tRNA binding	1.17E-02
95	GO:0016491: oxidoreductase activity	1.19E-02
96	GO:0015095: magnesium ion transmembrane transporter activity	1.28E-02
97	GO:0031072: heat shock protein binding	1.28E-02
98	GO:0005262: calcium channel activity	1.28E-02
99	GO:0008081: phosphoric diester hydrolase activity	1.28E-02
100	GO:0051537: 2 iron, 2 sulfur cluster binding	1.35E-02
101	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.40E-02
102	GO:0008168: methyltransferase activity	1.49E-02
103	GO:0030552: cAMP binding	1.51E-02
104	GO:0051287: NAD binding	1.51E-02
105	GO:0030553: cGMP binding	1.51E-02
106	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.69E-02
107	GO:0051087: chaperone binding	1.89E-02
108	GO:0005216: ion channel activity	1.89E-02
109	GO:0022891: substrate-specific transmembrane transporter activity	2.29E-02
110	GO:0003727: single-stranded RNA binding	2.43E-02
111	GO:0005215: transporter activity	2.48E-02
112	GO:0047134: protein-disulfide reductase activity	2.57E-02
113	GO:0004812: aminoacyl-tRNA ligase activity	2.57E-02
114	GO:0030551: cyclic nucleotide binding	2.72E-02
115	GO:0042803: protein homodimerization activity	2.73E-02
116	GO:0008080: N-acetyltransferase activity	2.87E-02
117	GO:0046872: metal ion binding	3.13E-02
118	GO:0004518: nuclease activity	3.49E-02
119	GO:0004519: endonuclease activity	3.71E-02
120	GO:0016791: phosphatase activity	3.82E-02
121	GO:0008237: metallopeptidase activity	3.99E-02
122	GO:0016597: amino acid binding	4.16E-02
123	GO:0008017: microtubule binding	4.34E-02
124	GO:0030247: polysaccharide binding	4.86E-02
125	GO:0004721: phosphoprotein phosphatase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	4.79E-76
4	GO:0009570: chloroplast stroma	2.35E-41
5	GO:0009941: chloroplast envelope	6.40E-36
6	GO:0009579: thylakoid	1.76E-30
7	GO:0009535: chloroplast thylakoid membrane	2.92E-28
8	GO:0009534: chloroplast thylakoid	2.26E-23
9	GO:0009543: chloroplast thylakoid lumen	4.65E-21
10	GO:0031977: thylakoid lumen	2.27E-19
11	GO:0005840: ribosome	2.15E-12
12	GO:0009654: photosystem II oxygen evolving complex	2.79E-09
13	GO:0019898: extrinsic component of membrane	3.52E-08
14	GO:0010007: magnesium chelatase complex	3.97E-08
15	GO:0031969: chloroplast membrane	4.32E-06
16	GO:0030095: chloroplast photosystem II	8.27E-05
17	GO:0042651: thylakoid membrane	1.57E-04
18	GO:0009533: chloroplast stromal thylakoid	2.80E-04
19	GO:0009547: plastid ribosome	3.32E-04
20	GO:0009782: photosystem I antenna complex	3.32E-04
21	GO:0009523: photosystem II	4.31E-04
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.31E-04
23	GO:0080085: signal recognition particle, chloroplast targeting	7.24E-04
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.24E-04
25	GO:0009706: chloroplast inner membrane	8.00E-04
26	GO:0032040: small-subunit processome	9.39E-04
27	GO:0009536: plastid	1.13E-03
28	GO:0000312: plastid small ribosomal subunit	1.19E-03
29	GO:0030076: light-harvesting complex	1.34E-03
30	GO:0005719: nuclear euchromatin	1.68E-03
31	GO:0016020: membrane	2.11E-03
32	GO:0046658: anchored component of plasma membrane	2.80E-03
33	GO:0009512: cytochrome b6f complex	2.89E-03
34	GO:0009986: cell surface	5.07E-03
35	GO:0009295: nucleoid	5.19E-03
36	GO:0010287: plastoglobule	5.55E-03
37	GO:0030529: intracellular ribonucleoprotein complex	5.83E-03
38	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.67E-03
39	GO:0015030: Cajal body	8.61E-03
40	GO:0000311: plastid large ribosomal subunit	1.17E-02
41	GO:0009508: plastid chromosome	1.28E-02
42	GO:0015935: small ribosomal subunit	2.02E-02
43	GO:0005871: kinesin complex	2.57E-02
44	GO:0009522: photosystem I	3.02E-02
45	GO:0043231: intracellular membrane-bounded organelle	3.77E-02
46	GO:0010319: stromule	3.99E-02
47	GO:0031225: anchored component of membrane	4.06E-02