co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0015800: acidic amino acid transport	0.00E+00
5	GO:0009877: nodulation	0.00E+00
6	GO:0010378: temperature compensation of the circadian clock	0.00E+00
7	GO:0042906: xanthine transport	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	4.59E-20
9	GO:0018298: protein-chromophore linkage	1.71E-12
10	GO:0009645: response to low light intensity stimulus	3.64E-09
11	GO:0010218: response to far red light	9.24E-09
12	GO:0009644: response to high light intensity	4.31E-08
13	GO:0015979: photosynthesis	5.50E-08
14	GO:0009637: response to blue light	6.04E-07
15	GO:0009409: response to cold	7.20E-07
16	GO:0009769: photosynthesis, light harvesting in photosystem II	7.37E-07
17	GO:0010114: response to red light	1.20E-06
18	GO:0009416: response to light stimulus	1.54E-05
19	GO:0007623: circadian rhythm	2.50E-05
20	GO:0015812: gamma-aminobutyric acid transport	1.37E-04
21	GO:0032958: inositol phosphate biosynthetic process	1.37E-04
22	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.37E-04
23	GO:0006351: transcription, DNA-templated	2.52E-04
24	GO:0006355: regulation of transcription, DNA-templated	2.99E-04
25	GO:0015720: allantoin transport	3.16E-04
26	GO:0015804: neutral amino acid transport	3.16E-04
27	GO:0006883: cellular sodium ion homeostasis	3.16E-04
28	GO:0048255: mRNA stabilization	3.16E-04
29	GO:0051170: nuclear import	3.16E-04
30	GO:0015857: uracil transport	3.16E-04
31	GO:1902884: positive regulation of response to oxidative stress	3.16E-04
32	GO:0042542: response to hydrogen peroxide	3.83E-04
33	GO:1901562: response to paraquat	5.20E-04
34	GO:1902448: positive regulation of shade avoidance	5.20E-04
35	GO:0006598: polyamine catabolic process	5.20E-04
36	GO:0071705: nitrogen compound transport	5.20E-04
37	GO:0003333: amino acid transmembrane transport	5.96E-04
38	GO:0048511: rhythmic process	5.96E-04
39	GO:0010017: red or far-red light signaling pathway	6.50E-04
40	GO:0080167: response to karrikin	7.29E-04
41	GO:0035556: intracellular signal transduction	7.38E-04
42	GO:0031936: negative regulation of chromatin silencing	7.44E-04
43	GO:1901332: negative regulation of lateral root development	7.44E-04
44	GO:0006020: inositol metabolic process	7.44E-04
45	GO:0010601: positive regulation of auxin biosynthetic process	7.44E-04
46	GO:0009687: abscisic acid metabolic process	9.85E-04
47	GO:0009765: photosynthesis, light harvesting	9.85E-04
48	GO:2000306: positive regulation of photomorphogenesis	9.85E-04
49	GO:0010600: regulation of auxin biosynthetic process	9.85E-04
50	GO:1901002: positive regulation of response to salt stress	9.85E-04
51	GO:0030104: water homeostasis	9.85E-04
52	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.25E-03
53	GO:0010286: heat acclimation	1.50E-03
54	GO:0009635: response to herbicide	1.53E-03
55	GO:0045962: positive regulation of development, heterochronic	1.53E-03
56	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.77E-03
57	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.83E-03
58	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.83E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.83E-03
60	GO:0009651: response to salt stress	1.92E-03
61	GO:0010038: response to metal ion	2.15E-03
62	GO:0010161: red light signaling pathway	2.15E-03
63	GO:1900056: negative regulation of leaf senescence	2.15E-03
64	GO:0048437: floral organ development	2.15E-03
65	GO:0010196: nonphotochemical quenching	2.15E-03
66	GO:0080111: DNA demethylation	2.15E-03
67	GO:0010468: regulation of gene expression	2.26E-03
68	GO:0000160: phosphorelay signal transduction system	2.29E-03
69	GO:0010078: maintenance of root meristem identity	2.49E-03
70	GO:0009704: de-etiolation	2.49E-03
71	GO:0010928: regulation of auxin mediated signaling pathway	2.49E-03
72	GO:0042255: ribosome assembly	2.49E-03
73	GO:0009735: response to cytokinin	2.72E-03
74	GO:0010099: regulation of photomorphogenesis	2.85E-03
75	GO:0009827: plant-type cell wall modification	2.85E-03
76	GO:0009658: chloroplast organization	3.14E-03
77	GO:0090333: regulation of stomatal closure	3.22E-03
78	GO:0006970: response to osmotic stress	3.45E-03
79	GO:0009640: photomorphogenesis	3.54E-03
80	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.60E-03
81	GO:0010380: regulation of chlorophyll biosynthetic process	3.60E-03
82	GO:0008643: carbohydrate transport	3.82E-03
83	GO:0009688: abscisic acid biosynthetic process	4.00E-03
84	GO:0009641: shade avoidance	4.00E-03
85	GO:0055062: phosphate ion homeostasis	4.00E-03
86	GO:0000165: MAPK cascade	4.27E-03
87	GO:0046856: phosphatidylinositol dephosphorylation	4.42E-03
88	GO:0042538: hyperosmotic salinity response	4.43E-03
89	GO:0009585: red, far-red light phototransduction	4.75E-03
90	GO:0016925: protein sumoylation	4.85E-03
91	GO:0050826: response to freezing	5.30E-03
92	GO:0009718: anthocyanin-containing compound biosynthetic process	5.30E-03
93	GO:0009767: photosynthetic electron transport chain	5.30E-03
94	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	5.30E-03
95	GO:0009266: response to temperature stimulus	5.76E-03
96	GO:0010207: photosystem II assembly	5.76E-03
97	GO:0090351: seedling development	6.23E-03
98	GO:0009408: response to heat	6.75E-03
99	GO:0016575: histone deacetylation	7.73E-03
100	GO:0010431: seed maturation	8.26E-03
101	GO:0009269: response to desiccation	8.26E-03
102	GO:0007165: signal transduction	8.29E-03
103	GO:0009737: response to abscisic acid	8.62E-03
104	GO:0009414: response to water deprivation	8.76E-03
105	GO:0071215: cellular response to abscisic acid stimulus	9.35E-03
106	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.05E-02
107	GO:0006814: sodium ion transport	1.23E-02
108	GO:0042752: regulation of circadian rhythm	1.23E-02
109	GO:0009556: microsporogenesis	1.29E-02
110	GO:0009739: response to gibberellin	1.31E-02
111	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.31E-02
112	GO:0009738: abscisic acid-activated signaling pathway	1.34E-02
113	GO:0000302: response to reactive oxygen species	1.36E-02
114	GO:0032502: developmental process	1.42E-02
115	GO:1901657: glycosyl compound metabolic process	1.49E-02
116	GO:0045893: positive regulation of transcription, DNA-templated	1.67E-02
117	GO:0016126: sterol biosynthetic process	1.76E-02
118	GO:0010029: regulation of seed germination	1.83E-02
119	GO:0048573: photoperiodism, flowering	1.98E-02
120	GO:0015995: chlorophyll biosynthetic process	1.98E-02
121	GO:0009817: defense response to fungus, incompatible interaction	2.12E-02
122	GO:0048481: plant ovule development	2.12E-02
123	GO:0010200: response to chitin	2.33E-02
124	GO:0009910: negative regulation of flower development	2.36E-02
125	GO:0009631: cold acclimation	2.36E-02
126	GO:0010119: regulation of stomatal movement	2.36E-02
127	GO:0006865: amino acid transport	2.43E-02
128	GO:0016051: carbohydrate biosynthetic process	2.51E-02
129	GO:0045892: negative regulation of transcription, DNA-templated	2.74E-02
130	GO:0051707: response to other organism	3.01E-02
131	GO:0000209: protein polyubiquitination	3.10E-02
132	GO:0009965: leaf morphogenesis	3.27E-02
133	GO:0006629: lipid metabolic process	3.32E-02
134	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.45E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	3.82E-02
136	GO:0009909: regulation of flower development	4.00E-02
137	GO:0009553: embryo sac development	4.68E-02
138	GO:0009624: response to nematode	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
5	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0031409: pigment binding	3.40E-18
10	GO:0016168: chlorophyll binding	7.55E-15
11	GO:0005515: protein binding	3.31E-06
12	GO:0004707: MAP kinase activity	2.74E-05
13	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.37E-04
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.37E-04
15	GO:0000829: inositol heptakisphosphate kinase activity	1.37E-04
16	GO:0080079: cellobiose glucosidase activity	1.37E-04
17	GO:0017091: AU-rich element binding	1.37E-04
18	GO:0000828: inositol hexakisphosphate kinase activity	1.37E-04
19	GO:0015180: L-alanine transmembrane transporter activity	3.16E-04
20	GO:0005274: allantoin uptake transmembrane transporter activity	3.16E-04
21	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.16E-04
22	GO:0046592: polyamine oxidase activity	5.20E-04
23	GO:0019948: SUMO activating enzyme activity	5.20E-04
24	GO:0046872: metal ion binding	6.28E-04
25	GO:0015189: L-lysine transmembrane transporter activity	7.44E-04
26	GO:0000254: C-4 methylsterol oxidase activity	7.44E-04
27	GO:0015181: arginine transmembrane transporter activity	7.44E-04
28	GO:0005253: anion channel activity	9.85E-04
29	GO:0015210: uracil transmembrane transporter activity	9.85E-04
30	GO:0005313: L-glutamate transmembrane transporter activity	9.85E-04
31	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.25E-03
32	GO:0000156: phosphorelay response regulator activity	1.33E-03
33	GO:0005247: voltage-gated chloride channel activity	1.53E-03
34	GO:0004629: phospholipase C activity	1.53E-03
35	GO:0004435: phosphatidylinositol phospholipase C activity	1.83E-03
36	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.64E-03
37	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	2.85E-03
38	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.85E-03
39	GO:0000989: transcription factor activity, transcription factor binding	3.22E-03
40	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.22E-03
41	GO:0015293: symporter activity	3.97E-03
42	GO:0061630: ubiquitin protein ligase activity	4.39E-03
43	GO:0047372: acylglycerol lipase activity	4.42E-03
44	GO:0003677: DNA binding	4.57E-03
45	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.85E-03
46	GO:0015171: amino acid transmembrane transporter activity	5.26E-03
47	GO:0005315: inorganic phosphate transmembrane transporter activity	5.30E-03
48	GO:0004565: beta-galactosidase activity	5.30E-03
49	GO:0008131: primary amine oxidase activity	5.76E-03
50	GO:0031624: ubiquitin conjugating enzyme binding	5.76E-03
51	GO:0008270: zinc ion binding	5.76E-03
52	GO:0003712: transcription cofactor activity	6.23E-03
53	GO:0004407: histone deacetylase activity	7.22E-03
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.69E-03
55	GO:0003727: single-stranded RNA binding	9.92E-03
56	GO:0008514: organic anion transmembrane transporter activity	9.92E-03
57	GO:0015297: antiporter activity	1.12E-02
58	GO:0005351: sugar:proton symporter activity	1.14E-02
59	GO:0102483: scopolin beta-glucosidase activity	1.98E-02
60	GO:0004497: monooxygenase activity	2.25E-02
61	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.28E-02
62	GO:0003993: acid phosphatase activity	2.60E-02
63	GO:0008422: beta-glucosidase activity	2.68E-02
64	GO:0042393: histone binding	2.76E-02
65	GO:0005198: structural molecule activity	3.27E-02
66	GO:0005506: iron ion binding	3.33E-02
67	GO:0005215: transporter activity	3.84E-02
68	GO:0031625: ubiquitin protein ligase binding	4.00E-02
69	GO:0045735: nutrient reservoir activity	4.19E-02
70	GO:0022857: transmembrane transporter activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	4.10E-16
2	GO:0030076: light-harvesting complex	4.52E-16
3	GO:0010287: plastoglobule	2.85E-13
4	GO:0009579: thylakoid	9.24E-10
5	GO:0009534: chloroplast thylakoid	1.58E-08
6	GO:0009523: photosystem II	4.37E-08
7	GO:0009941: chloroplast envelope	5.98E-07
8	GO:0009535: chloroplast thylakoid membrane	8.17E-07
9	GO:0009517: PSII associated light-harvesting complex II	1.55E-05
10	GO:0042651: thylakoid membrane	2.33E-05
11	GO:0009783: photosystem II antenna complex	1.37E-04
12	GO:0016021: integral component of membrane	2.02E-04
13	GO:0009898: cytoplasmic side of plasma membrane	9.85E-04
14	GO:0032586: protein storage vacuole membrane	9.85E-04
15	GO:0034707: chloride channel complex	1.53E-03
16	GO:0009533: chloroplast stromal thylakoid	2.15E-03
17	GO:0000151: ubiquitin ligase complex	2.18E-03
18	GO:0000326: protein storage vacuole	2.85E-03
19	GO:0009507: chloroplast	3.90E-03
20	GO:0016020: membrane	2.24E-02
21	GO:0005634: nucleus	3.35E-02
22	GO:0031966: mitochondrial membrane	3.54E-02
23	GO:0016607: nuclear speck	4.29E-02
24	GO:0005887: integral component of plasma membrane	4.50E-02