co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010430: fatty acid omega-oxidation	0.00E+00
2	GO:0010424: DNA methylation on cytosine within a CG sequence	1.62E-07
3	GO:0007155: cell adhesion	2.02E-05
4	GO:0010442: guard cell morphogenesis	5.18E-05
5	GO:0019510: S-adenosylhomocysteine catabolic process	5.18E-05
6	GO:0010216: maintenance of DNA methylation	5.75E-05
7	GO:1903338: regulation of cell wall organization or biogenesis	1.27E-04
8	GO:0033353: S-adenosylmethionine cycle	1.27E-04
9	GO:2000123: positive regulation of stomatal complex development	1.27E-04
10	GO:0052541: plant-type cell wall cellulose metabolic process	1.27E-04
11	GO:0006695: cholesterol biosynthetic process	1.27E-04
12	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.27E-04
13	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.27E-04
14	GO:0060919: auxin influx	1.27E-04
15	GO:0009294: DNA mediated transformation	1.94E-04
16	GO:0032776: DNA methylation on cytosine	2.17E-04
17	GO:0015840: urea transport	2.17E-04
18	GO:0080170: hydrogen peroxide transmembrane transport	3.17E-04
19	GO:0051016: barbed-end actin filament capping	3.17E-04
20	GO:0010583: response to cyclopentenone	3.58E-04
21	GO:2000038: regulation of stomatal complex development	4.24E-04
22	GO:0006546: glycine catabolic process	4.24E-04
23	GO:0009765: photosynthesis, light harvesting	4.24E-04
24	GO:0006085: acetyl-CoA biosynthetic process	4.24E-04
25	GO:0007267: cell-cell signaling	4.31E-04
26	GO:0016123: xanthophyll biosynthetic process	5.39E-04
27	GO:0010375: stomatal complex patterning	5.39E-04
28	GO:0016120: carotene biosynthetic process	5.39E-04
29	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.87E-04
30	GO:0009094: L-phenylalanine biosynthetic process	7.87E-04
31	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.35E-04
32	GO:0045010: actin nucleation	1.06E-03
33	GO:0008610: lipid biosynthetic process	1.06E-03
34	GO:0071555: cell wall organization	1.23E-03
35	GO:0033384: geranyl diphosphate biosynthetic process	1.35E-03
36	GO:0006754: ATP biosynthetic process	1.35E-03
37	GO:0048589: developmental growth	1.35E-03
38	GO:0045337: farnesyl diphosphate biosynthetic process	1.35E-03
39	GO:0006349: regulation of gene expression by genetic imprinting	1.50E-03
40	GO:0048829: root cap development	1.67E-03
41	GO:0016569: covalent chromatin modification	1.76E-03
42	GO:0030036: actin cytoskeleton organization	2.19E-03
43	GO:0050826: response to freezing	2.19E-03
44	GO:0010167: response to nitrate	2.56E-03
45	GO:0006071: glycerol metabolic process	2.76E-03
46	GO:0006833: water transport	2.76E-03
47	GO:0007010: cytoskeleton organization	2.96E-03
48	GO:0010026: trichome differentiation	3.16E-03
49	GO:0007017: microtubule-based process	3.16E-03
50	GO:0003333: amino acid transmembrane transport	3.37E-03
51	GO:0006730: one-carbon metabolic process	3.59E-03
52	GO:0016117: carotenoid biosynthetic process	4.26E-03
53	GO:0000271: polysaccharide biosynthetic process	4.49E-03
54	GO:0034220: ion transmembrane transport	4.49E-03
55	GO:0045489: pectin biosynthetic process	4.72E-03
56	GO:0071554: cell wall organization or biogenesis	5.46E-03
57	GO:0042128: nitrate assimilation	7.59E-03
58	GO:0010411: xyloglucan metabolic process	7.88E-03
59	GO:0016049: cell growth	8.17E-03
60	GO:0048767: root hair elongation	8.76E-03
61	GO:0010311: lateral root formation	8.76E-03
62	GO:0006629: lipid metabolic process	8.97E-03
63	GO:0009910: negative regulation of flower development	9.36E-03
64	GO:0006865: amino acid transport	9.68E-03
65	GO:0016051: carbohydrate biosynthetic process	9.99E-03
66	GO:0009926: auxin polar transport	1.19E-02
67	GO:0042546: cell wall biogenesis	1.23E-02
68	GO:0051603: proteolysis involved in cellular protein catabolic process	1.51E-02
69	GO:0048367: shoot system development	1.70E-02
70	GO:0009740: gibberellic acid mediated signaling pathway	1.81E-02
71	GO:0009553: embryo sac development	1.85E-02
72	GO:0051726: regulation of cell cycle	1.97E-02
73	GO:0009742: brassinosteroid mediated signaling pathway	1.97E-02
74	GO:0055085: transmembrane transport	2.03E-02
75	GO:0006468: protein phosphorylation	2.70E-02
76	GO:0045490: pectin catabolic process	2.79E-02
77	GO:0010228: vegetative to reproductive phase transition of meristem	2.88E-02
78	GO:0007166: cell surface receptor signaling pathway	3.07E-02
79	GO:0009617: response to bacterium	3.17E-02
80	GO:0055114: oxidation-reduction process	3.28E-02
81	GO:0007049: cell cycle	4.12E-02
82	GO:0080167: response to karrikin	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
2	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
3	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.18E-05
6	GO:0004013: adenosylhomocysteinase activity	5.18E-05
7	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	1.27E-04
8	GO:0004047: aminomethyltransferase activity	1.27E-04
9	GO:0046593: mandelonitrile lyase activity	1.27E-04
10	GO:0010429: methyl-CpNpN binding	2.17E-04
11	GO:0010428: methyl-CpNpG binding	2.17E-04
12	GO:0019901: protein kinase binding	3.13E-04
13	GO:0003878: ATP citrate synthase activity	3.17E-04
14	GO:0015204: urea transmembrane transporter activity	4.24E-04
15	GO:0047769: arogenate dehydratase activity	4.24E-04
16	GO:0004664: prephenate dehydratase activity	4.24E-04
17	GO:0010328: auxin influx transmembrane transporter activity	4.24E-04
18	GO:0005200: structural constituent of cytoskeleton	4.31E-04
19	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.31E-04
20	GO:0051753: mannan synthase activity	7.87E-04
21	GO:0016832: aldehyde-lyase activity	7.87E-04
22	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.87E-04
23	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.35E-03
24	GO:0004337: geranyltranstransferase activity	1.35E-03
25	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.35E-03
26	GO:0008327: methyl-CpG binding	1.84E-03
27	GO:0004161: dimethylallyltranstransferase activity	1.84E-03
28	GO:0016829: lyase activity	2.51E-03
29	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.59E-03
30	GO:0030570: pectate lyase activity	3.80E-03
31	GO:0005507: copper ion binding	4.15E-03
32	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.46E-03
33	GO:0051015: actin filament binding	5.97E-03
34	GO:0008483: transaminase activity	6.49E-03
35	GO:0016413: O-acetyltransferase activity	6.76E-03
36	GO:0016597: amino acid binding	6.76E-03
37	GO:0015250: water channel activity	7.04E-03
38	GO:0016757: transferase activity, transferring glycosyl groups	7.87E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.88E-03
40	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	9.06E-03
41	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	9.36E-03
42	GO:0004672: protein kinase activity	1.06E-02
43	GO:0051539: 4 iron, 4 sulfur cluster binding	1.09E-02
44	GO:0004185: serine-type carboxypeptidase activity	1.19E-02
45	GO:0015293: symporter activity	1.30E-02
46	GO:0051287: NAD binding	1.37E-02
47	GO:0003777: microtubule motor activity	1.58E-02
48	GO:0015171: amino acid transmembrane transporter activity	1.58E-02
49	GO:0004650: polygalacturonase activity	1.77E-02
50	GO:0003779: actin binding	1.85E-02
51	GO:0016758: transferase activity, transferring hexosyl groups	2.18E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.26E-02
53	GO:0015144: carbohydrate transmembrane transporter activity	2.52E-02
54	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.66E-02
55	GO:0005351: sugar:proton symporter activity	2.75E-02
56	GO:0008017: microtubule binding	2.88E-02
57	GO:0008168: methyltransferase activity	3.71E-02
58	GO:0003682: chromatin binding	3.97E-02
59	GO:0050660: flavin adenine dinucleotide binding	4.23E-02
60	GO:0004842: ubiquitin-protein transferase activity	4.46E-02
61	GO:0061630: ubiquitin protein ligase activity	4.60E-02
62	GO:0004674: protein serine/threonine kinase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046658: anchored component of plasma membrane	1.91E-06
2	GO:0031225: anchored component of membrane	1.25E-05
3	GO:0005618: cell wall	1.93E-05
4	GO:0005886: plasma membrane	2.26E-05
5	GO:0009346: citrate lyase complex	3.17E-04
6	GO:0000139: Golgi membrane	3.82E-04
7	GO:0005794: Golgi apparatus	3.88E-04
8	GO:0048046: apoplast	5.19E-04
9	GO:0005576: extracellular region	5.92E-04
10	GO:0009506: plasmodesma	6.13E-04
11	GO:0005802: trans-Golgi network	8.71E-04
12	GO:0016020: membrane	9.16E-04
13	GO:0042807: central vacuole	9.18E-04
14	GO:0005768: endosome	1.05E-03
15	GO:0016021: integral component of membrane	1.13E-03
16	GO:0000326: protein storage vacuole	1.20E-03
17	GO:0005720: nuclear heterochromatin	1.35E-03
18	GO:0045298: tubulin complex	1.35E-03
19	GO:0009505: plant-type cell wall	1.73E-03
20	GO:0005874: microtubule	5.87E-03
21	GO:0005856: cytoskeleton	1.30E-02
22	GO:0005773: vacuole	1.54E-02
23	GO:0009705: plant-type vacuole membrane	2.79E-02
24	GO:0005615: extracellular space	3.03E-02
25	GO:0005774: vacuolar membrane	3.11E-02
26	GO:0031969: chloroplast membrane	4.44E-02