Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0042407: cristae formation0.00E+00
4GO:0015805: S-adenosyl-L-methionine transport0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:0042371: vitamin K biosynthetic process0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
15GO:0090470: shoot organ boundary specification0.00E+00
16GO:0061635: regulation of protein complex stability0.00E+00
17GO:0006412: translation6.03E-18
18GO:0015979: photosynthesis1.40E-15
19GO:0032544: plastid translation1.68E-13
20GO:0042254: ribosome biogenesis1.68E-11
21GO:0009735: response to cytokinin1.15E-09
22GO:0009658: chloroplast organization4.00E-09
23GO:0010027: thylakoid membrane organization1.59E-08
24GO:0015995: chlorophyll biosynthetic process2.95E-08
25GO:0010196: nonphotochemical quenching1.49E-07
26GO:0010207: photosystem II assembly5.63E-06
27GO:0090391: granum assembly2.76E-05
28GO:0045454: cell redox homeostasis2.89E-05
29GO:0009773: photosynthetic electron transport in photosystem I7.80E-05
30GO:0015976: carbon utilization1.05E-04
31GO:0010236: plastoquinone biosynthetic process1.63E-04
32GO:0042549: photosystem II stabilization2.32E-04
33GO:1901259: chloroplast rRNA processing3.12E-04
34GO:0042372: phylloquinone biosynthetic process3.12E-04
35GO:0043489: RNA stabilization4.23E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.23E-04
37GO:0000481: maturation of 5S rRNA4.23E-04
38GO:1904964: positive regulation of phytol biosynthetic process4.23E-04
39GO:0034337: RNA folding4.23E-04
40GO:0071588: hydrogen peroxide mediated signaling pathway4.23E-04
41GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.23E-04
42GO:0006353: DNA-templated transcription, termination5.03E-04
43GO:0042335: cuticle development5.17E-04
44GO:0000413: protein peptidyl-prolyl isomerization5.17E-04
45GO:0071482: cellular response to light stimulus6.14E-04
46GO:0006779: porphyrin-containing compound biosynthetic process8.68E-04
47GO:0034755: iron ion transmembrane transport9.16E-04
48GO:0006423: cysteinyl-tRNA aminoacylation9.16E-04
49GO:0006729: tetrahydrobiopterin biosynthetic process9.16E-04
50GO:0006568: tryptophan metabolic process9.16E-04
51GO:0030388: fructose 1,6-bisphosphate metabolic process9.16E-04
52GO:0010270: photosystem II oxygen evolving complex assembly9.16E-04
53GO:1902326: positive regulation of chlorophyll biosynthetic process9.16E-04
54GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-03
55GO:0043085: positive regulation of catalytic activity1.16E-03
56GO:0006954: inflammatory response1.49E-03
57GO:0006518: peptide metabolic process1.49E-03
58GO:0010581: regulation of starch biosynthetic process1.49E-03
59GO:0071492: cellular response to UV-A1.49E-03
60GO:0006000: fructose metabolic process1.49E-03
61GO:0042742: defense response to bacterium1.67E-03
62GO:0010020: chloroplast fission1.70E-03
63GO:0019253: reductive pentose-phosphate cycle1.70E-03
64GO:0006424: glutamyl-tRNA aminoacylation2.15E-03
65GO:0006165: nucleoside diphosphate phosphorylation2.15E-03
66GO:0006228: UTP biosynthetic process2.15E-03
67GO:0031048: chromatin silencing by small RNA2.15E-03
68GO:0016556: mRNA modification2.15E-03
69GO:0043572: plastid fission2.15E-03
70GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.15E-03
71GO:2001141: regulation of RNA biosynthetic process2.15E-03
72GO:0010371: regulation of gibberellin biosynthetic process2.15E-03
73GO:0010239: chloroplast mRNA processing2.15E-03
74GO:0006241: CTP biosynthetic process2.15E-03
75GO:0019048: modulation by virus of host morphology or physiology2.15E-03
76GO:0009650: UV protection2.15E-03
77GO:0061077: chaperone-mediated protein folding2.86E-03
78GO:0006021: inositol biosynthetic process2.89E-03
79GO:0051567: histone H3-K9 methylation2.89E-03
80GO:0010037: response to carbon dioxide2.89E-03
81GO:0071486: cellular response to high light intensity2.89E-03
82GO:0009765: photosynthesis, light harvesting2.89E-03
83GO:0006183: GTP biosynthetic process2.89E-03
84GO:0045727: positive regulation of translation2.89E-03
85GO:2000122: negative regulation of stomatal complex development2.89E-03
86GO:0009411: response to UV3.42E-03
87GO:0009409: response to cold3.45E-03
88GO:0048359: mucilage metabolic process involved in seed coat development3.71E-03
89GO:0032543: mitochondrial translation3.71E-03
90GO:0016120: carotene biosynthetic process3.71E-03
91GO:0006564: L-serine biosynthetic process3.71E-03
92GO:0031365: N-terminal protein amino acid modification3.71E-03
93GO:0016123: xanthophyll biosynthetic process3.71E-03
94GO:0006665: sphingolipid metabolic process3.71E-03
95GO:0010190: cytochrome b6f complex assembly4.59E-03
96GO:0006828: manganese ion transport4.59E-03
97GO:0032973: amino acid export4.59E-03
98GO:0016458: gene silencing4.59E-03
99GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.59E-03
100GO:0000470: maturation of LSU-rRNA4.59E-03
101GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.53E-03
102GO:0017148: negative regulation of translation5.53E-03
103GO:0010189: vitamin E biosynthetic process5.53E-03
104GO:0010019: chloroplast-nucleus signaling pathway5.53E-03
105GO:0010555: response to mannitol5.53E-03
106GO:0009955: adaxial/abaxial pattern specification5.53E-03
107GO:0006457: protein folding5.96E-03
108GO:0006400: tRNA modification6.54E-03
109GO:0009772: photosynthetic electron transport in photosystem II6.54E-03
110GO:0043090: amino acid import6.54E-03
111GO:0009642: response to light intensity7.60E-03
112GO:0042255: ribosome assembly7.60E-03
113GO:0032508: DNA duplex unwinding7.60E-03
114GO:0000105: histidine biosynthetic process7.60E-03
115GO:0048564: photosystem I assembly7.60E-03
116GO:0030091: protein repair7.60E-03
117GO:0006002: fructose 6-phosphate metabolic process8.73E-03
118GO:0019430: removal of superoxide radicals8.73E-03
119GO:0080144: amino acid homeostasis9.92E-03
120GO:0006783: heme biosynthetic process9.92E-03
121GO:0015780: nucleotide-sugar transport9.92E-03
122GO:0018298: protein-chromophore linkage1.10E-02
123GO:0009817: defense response to fungus, incompatible interaction1.10E-02
124GO:0010380: regulation of chlorophyll biosynthetic process1.12E-02
125GO:0042744: hydrogen peroxide catabolic process1.12E-02
126GO:0043067: regulation of programmed cell death1.12E-02
127GO:0042761: very long-chain fatty acid biosynthetic process1.12E-02
128GO:0006810: transport1.13E-02
129GO:0009793: embryo development ending in seed dormancy1.21E-02
130GO:0030422: production of siRNA involved in RNA interference1.24E-02
131GO:0006949: syncytium formation1.24E-02
132GO:0009631: cold acclimation1.27E-02
133GO:0006869: lipid transport1.30E-02
134GO:0009073: aromatic amino acid family biosynthetic process1.38E-02
135GO:0008285: negative regulation of cell proliferation1.38E-02
136GO:0006879: cellular iron ion homeostasis1.38E-02
137GO:0006352: DNA-templated transcription, initiation1.38E-02
138GO:0006415: translational termination1.38E-02
139GO:0018119: peptidyl-cysteine S-nitrosylation1.38E-02
140GO:0006816: calcium ion transport1.38E-02
141GO:0009637: response to blue light1.40E-02
142GO:0034599: cellular response to oxidative stress1.46E-02
143GO:0006790: sulfur compound metabolic process1.52E-02
144GO:0006839: mitochondrial transport1.60E-02
145GO:0006006: glucose metabolic process1.66E-02
146GO:0006094: gluconeogenesis1.66E-02
147GO:0005986: sucrose biosynthetic process1.66E-02
148GO:0010114: response to red light1.81E-02
149GO:0005985: sucrose metabolic process1.96E-02
150GO:0090351: seedling development1.96E-02
151GO:0046854: phosphatidylinositol phosphorylation1.96E-02
152GO:0010025: wax biosynthetic process2.12E-02
153GO:0000027: ribosomal large subunit assembly2.29E-02
154GO:0007010: cytoskeleton organization2.29E-02
155GO:0019344: cysteine biosynthetic process2.29E-02
156GO:0006364: rRNA processing2.44E-02
157GO:0009768: photosynthesis, light harvesting in photosystem I2.45E-02
158GO:0010073: meristem maintenance2.45E-02
159GO:0006418: tRNA aminoacylation for protein translation2.45E-02
160GO:0006306: DNA methylation2.62E-02
161GO:0006730: one-carbon metabolic process2.80E-02
162GO:0016226: iron-sulfur cluster assembly2.80E-02
163GO:0010227: floral organ abscission2.98E-02
164GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.98E-02
165GO:0019722: calcium-mediated signaling3.16E-02
166GO:0009306: protein secretion3.16E-02
167GO:0010091: trichome branching3.16E-02
168GO:0016117: carotenoid biosynthetic process3.34E-02
169GO:0055114: oxidation-reduction process3.48E-02
170GO:0008033: tRNA processing3.54E-02
171GO:0006662: glycerol ether metabolic process3.73E-02
172GO:0010197: polar nucleus fusion3.73E-02
173GO:0006342: chromatin silencing3.73E-02
174GO:0006814: sodium ion transport3.93E-02
175GO:0000302: response to reactive oxygen species4.33E-02
176GO:0002229: defense response to oomycetes4.33E-02
177GO:0032502: developmental process4.54E-02
178GO:0009828: plant-type cell wall loosening4.96E-02
RankGO TermAdjusted P value
1GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
2GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
3GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0052834: inositol monophosphate phosphatase activity0.00E+00
14GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
15GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
16GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
17GO:0019843: rRNA binding1.75E-31
18GO:0003735: structural constituent of ribosome8.39E-22
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.97E-14
20GO:0005528: FK506 binding9.77E-11
21GO:0051920: peroxiredoxin activity7.62E-08
22GO:0016209: antioxidant activity2.69E-07
23GO:0016851: magnesium chelatase activity3.72E-07
24GO:0004659: prenyltransferase activity1.05E-04
25GO:0008266: poly(U) RNA binding1.41E-04
26GO:0004601: peroxidase activity3.38E-04
27GO:0004655: porphobilinogen synthase activity4.23E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.23E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity4.23E-04
30GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.23E-04
31GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.23E-04
32GO:0004425: indole-3-glycerol-phosphate synthase activity4.23E-04
33GO:0052833: inositol monophosphate 4-phosphatase activity9.16E-04
34GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity9.16E-04
35GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.16E-04
36GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.16E-04
37GO:0004617: phosphoglycerate dehydrogenase activity9.16E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity9.16E-04
39GO:0004817: cysteine-tRNA ligase activity9.16E-04
40GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.16E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.16E-04
42GO:0016630: protochlorophyllide reductase activity9.16E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity9.16E-04
44GO:0008047: enzyme activator activity1.01E-03
45GO:0016168: chlorophyll binding1.27E-03
46GO:0002161: aminoacyl-tRNA editing activity1.49E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.49E-03
48GO:0030267: glyoxylate reductase (NADP) activity1.49E-03
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.49E-03
50GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.49E-03
51GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.49E-03
52GO:0004089: carbonate dehydratase activity1.51E-03
53GO:0031072: heat shock protein binding1.51E-03
54GO:0004222: metalloendopeptidase activity1.87E-03
55GO:0016149: translation release factor activity, codon specific2.15E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.15E-03
57GO:0035197: siRNA binding2.15E-03
58GO:0004550: nucleoside diphosphate kinase activity2.15E-03
59GO:0043023: ribosomal large subunit binding2.15E-03
60GO:0008097: 5S rRNA binding2.15E-03
61GO:0008508: bile acid:sodium symporter activity2.15E-03
62GO:0043495: protein anchor2.89E-03
63GO:0001053: plastid sigma factor activity2.89E-03
64GO:0016987: sigma factor activity2.89E-03
65GO:0022891: substrate-specific transmembrane transporter activity3.42E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor3.71E-03
67GO:0004040: amidase activity3.71E-03
68GO:0009922: fatty acid elongase activity3.71E-03
69GO:0003959: NADPH dehydrogenase activity3.71E-03
70GO:0005509: calcium ion binding4.17E-03
71GO:0003729: mRNA binding4.31E-03
72GO:0004130: cytochrome-c peroxidase activity4.59E-03
73GO:0016208: AMP binding4.59E-03
74GO:0016688: L-ascorbate peroxidase activity4.59E-03
75GO:0004791: thioredoxin-disulfide reductase activity5.05E-03
76GO:0003723: RNA binding5.16E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.53E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.53E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.53E-03
80GO:0016788: hydrolase activity, acting on ester bonds6.39E-03
81GO:0019899: enzyme binding6.54E-03
82GO:0008235: metalloexopeptidase activity6.54E-03
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.61E-03
84GO:0008237: metallopeptidase activity7.48E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity7.60E-03
86GO:0004033: aldo-keto reductase (NADP) activity7.60E-03
87GO:0003747: translation release factor activity9.92E-03
88GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.92E-03
89GO:0005384: manganese ion transmembrane transporter activity1.12E-02
90GO:0047617: acyl-CoA hydrolase activity1.12E-02
91GO:0005381: iron ion transmembrane transporter activity1.12E-02
92GO:0004177: aminopeptidase activity1.38E-02
93GO:0003746: translation elongation factor activity1.40E-02
94GO:0000049: tRNA binding1.52E-02
95GO:0045551: cinnamyl-alcohol dehydrogenase activity1.52E-02
96GO:0004521: endoribonuclease activity1.52E-02
97GO:0008081: phosphoric diester hydrolase activity1.66E-02
98GO:0015095: magnesium ion transmembrane transporter activity1.66E-02
99GO:0051537: 2 iron, 2 sulfur cluster binding1.95E-02
100GO:0031409: pigment binding2.12E-02
101GO:0051287: NAD binding2.19E-02
102GO:0046872: metal ion binding2.21E-02
103GO:0051536: iron-sulfur cluster binding2.29E-02
104GO:0015079: potassium ion transmembrane transporter activity2.45E-02
105GO:0008289: lipid binding2.54E-02
106GO:0004176: ATP-dependent peptidase activity2.62E-02
107GO:0016887: ATPase activity2.98E-02
108GO:0030570: pectate lyase activity2.98E-02
109GO:0003727: single-stranded RNA binding3.16E-02
110GO:0008514: organic anion transmembrane transporter activity3.16E-02
111GO:0047134: protein-disulfide reductase activity3.34E-02
112GO:0004812: aminoacyl-tRNA ligase activity3.34E-02
113GO:0051082: unfolded protein binding3.47E-02
114GO:0052689: carboxylic ester hydrolase activity3.68E-02
115GO:0008080: N-acetyltransferase activity3.73E-02
116GO:0050662: coenzyme binding3.93E-02
117GO:0016759: cellulose synthase activity4.96E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0009507: chloroplast1.68E-103
5GO:0009570: chloroplast stroma1.40E-70
6GO:0009941: chloroplast envelope1.99E-53
7GO:0009535: chloroplast thylakoid membrane1.69E-44
8GO:0009579: thylakoid1.11E-39
9GO:0009543: chloroplast thylakoid lumen5.59E-28
10GO:0009534: chloroplast thylakoid9.80E-23
11GO:0005840: ribosome4.19E-22
12GO:0031977: thylakoid lumen9.06E-22
13GO:0009654: photosystem II oxygen evolving complex2.01E-12
14GO:0019898: extrinsic component of membrane2.91E-09
15GO:0010007: magnesium chelatase complex7.73E-08
16GO:0048046: apoplast1.17E-05
17GO:0042651: thylakoid membrane1.46E-05
18GO:0031969: chloroplast membrane1.58E-05
19GO:0000311: plastid large ribosomal subunit9.65E-05
20GO:0010319: stromule1.19E-04
21GO:0030095: chloroplast photosystem II1.41E-04
22GO:0009706: chloroplast inner membrane2.51E-04
23GO:0015934: large ribosomal subunit2.95E-04
24GO:0009536: plastid3.05E-04
25GO:0009923: fatty acid elongase complex4.23E-04
26GO:0009547: plastid ribosome4.23E-04
27GO:0009523: photosystem II6.83E-04
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.36E-04
29GO:0016020: membrane1.22E-03
30GO:0000312: plastid small ribosomal subunit1.70E-03
31GO:0005719: nuclear euchromatin2.15E-03
32GO:0015935: small ribosomal subunit2.86E-03
33GO:0046658: anchored component of plasma membrane4.90E-03
34GO:0009533: chloroplast stromal thylakoid6.54E-03
35GO:0030529: intracellular ribonucleoprotein complex8.41E-03
36GO:0009539: photosystem II reaction center8.73E-03
37GO:0010287: plastoglobule8.84E-03
38GO:0022625: cytosolic large ribosomal subunit9.31E-03
39GO:0005763: mitochondrial small ribosomal subunit9.92E-03
40GO:0022626: cytosolic ribosome1.09E-02
41GO:0015030: Cajal body1.12E-02
42GO:0032040: small-subunit processome1.52E-02
43GO:0030076: light-harvesting complex1.96E-02
44GO:0005875: microtubule associated complex2.12E-02
45GO:0009532: plastid stroma2.62E-02
46GO:0009522: photosystem I3.93E-02
47GO:0005743: mitochondrial inner membrane4.79E-02
Gene type



Gene DE type