Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009715: chalcone biosynthetic process0.00E+00
2GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
3GO:0090393: sepal giant cell development0.00E+00
4GO:0015822: ornithine transport0.00E+00
5GO:0071555: cell wall organization4.81E-07
6GO:0080167: response to karrikin2.35E-06
7GO:0045489: pectin biosynthetic process1.74E-05
8GO:0071554: cell wall organization or biogenesis2.69E-05
9GO:0006546: glycine catabolic process5.77E-05
10GO:0006833: water transport9.16E-05
11GO:0009813: flavonoid biosynthetic process1.01E-04
12GO:0016051: carbohydrate biosynthetic process1.42E-04
13GO:0016117: carotenoid biosynthetic process2.33E-04
14GO:0000271: polysaccharide biosynthetic process2.60E-04
15GO:0034220: ion transmembrane transport2.60E-04
16GO:1901349: glucosinolate transport2.97E-04
17GO:1902265: abscisic acid homeostasis2.97E-04
18GO:0090449: phloem glucosinolate loading2.97E-04
19GO:0071370: cellular response to gibberellin stimulus2.97E-04
20GO:0006659: phosphatidylserine biosynthetic process2.97E-04
21GO:0000066: mitochondrial ornithine transport2.97E-04
22GO:0019510: S-adenosylhomocysteine catabolic process2.97E-04
23GO:0052543: callose deposition in cell wall2.98E-04
24GO:0007155: cell adhesion2.98E-04
25GO:0010583: response to cyclopentenone4.16E-04
26GO:0007267: cell-cell signaling5.29E-04
27GO:0033353: S-adenosylmethionine cycle6.50E-04
28GO:0015786: UDP-glucose transport6.50E-04
29GO:0007154: cell communication6.50E-04
30GO:0060919: auxin influx6.50E-04
31GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.50E-04
32GO:0030388: fructose 1,6-bisphosphate metabolic process6.50E-04
33GO:2000123: positive regulation of stomatal complex development6.50E-04
34GO:0006152: purine nucleoside catabolic process6.50E-04
35GO:0009629: response to gravity6.50E-04
36GO:1903338: regulation of cell wall organization or biogenesis6.50E-04
37GO:0030036: actin cytoskeleton organization9.08E-04
38GO:0048768: root hair cell tip growth1.02E-03
39GO:0006000: fructose metabolic process1.05E-03
40GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.05E-03
41GO:0015840: urea transport1.05E-03
42GO:0006696: ergosterol biosynthetic process1.05E-03
43GO:0005977: glycogen metabolic process1.05E-03
44GO:0015783: GDP-fucose transport1.05E-03
45GO:0006011: UDP-glucose metabolic process1.05E-03
46GO:0031022: nuclear migration along microfilament1.05E-03
47GO:0017157: regulation of exocytosis1.05E-03
48GO:0009637: response to blue light1.15E-03
49GO:0006810: transport1.16E-03
50GO:0009833: plant-type primary cell wall biogenesis1.27E-03
51GO:0051016: barbed-end actin filament capping1.51E-03
52GO:0006168: adenine salvage1.51E-03
53GO:0032877: positive regulation of DNA endoreduplication1.51E-03
54GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.51E-03
55GO:0006166: purine ribonucleoside salvage1.51E-03
56GO:0072334: UDP-galactose transmembrane transport1.51E-03
57GO:0080170: hydrogen peroxide transmembrane transport1.51E-03
58GO:0009744: response to sucrose1.58E-03
59GO:0042546: cell wall biogenesis1.66E-03
60GO:0006730: one-carbon metabolic process1.86E-03
61GO:2000038: regulation of stomatal complex development2.02E-03
62GO:0006021: inositol biosynthetic process2.02E-03
63GO:0006749: glutathione metabolic process2.02E-03
64GO:0009902: chloroplast relocation2.02E-03
65GO:0009694: jasmonic acid metabolic process2.02E-03
66GO:0010037: response to carbon dioxide2.02E-03
67GO:0006542: glutamine biosynthetic process2.02E-03
68GO:0019676: ammonia assimilation cycle2.02E-03
69GO:0015976: carbon utilization2.02E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system2.02E-03
71GO:0009765: photosynthesis, light harvesting2.02E-03
72GO:2000122: negative regulation of stomatal complex development2.02E-03
73GO:0019722: calcium-mediated signaling2.20E-03
74GO:0046785: microtubule polymerization2.58E-03
75GO:0016120: carotene biosynthetic process2.58E-03
76GO:0016123: xanthophyll biosynthetic process2.58E-03
77GO:0044209: AMP salvage2.58E-03
78GO:0010375: stomatal complex patterning2.58E-03
79GO:0009741: response to brassinosteroid2.77E-03
80GO:0010942: positive regulation of cell death3.19E-03
81GO:0010304: PSII associated light-harvesting complex II catabolic process3.19E-03
82GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.19E-03
83GO:0009791: post-embryonic development3.20E-03
84GO:0045926: negative regulation of growth3.84E-03
85GO:0017148: negative regulation of translation3.84E-03
86GO:0009903: chloroplast avoidance movement3.84E-03
87GO:0009554: megasporogenesis3.84E-03
88GO:0010555: response to mannitol3.84E-03
89GO:0005975: carbohydrate metabolic process3.84E-03
90GO:2000067: regulation of root morphogenesis3.84E-03
91GO:0051510: regulation of unidimensional cell growth4.53E-03
92GO:0016126: sterol biosynthetic process4.94E-03
93GO:0009787: regulation of abscisic acid-activated signaling pathway5.26E-03
94GO:0045010: actin nucleation5.26E-03
95GO:0031540: regulation of anthocyanin biosynthetic process5.26E-03
96GO:0006402: mRNA catabolic process5.26E-03
97GO:0007186: G-protein coupled receptor signaling pathway6.03E-03
98GO:0006002: fructose 6-phosphate metabolic process6.03E-03
99GO:0022900: electron transport chain6.03E-03
100GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.03E-03
101GO:0006633: fatty acid biosynthetic process6.44E-03
102GO:0016042: lipid catabolic process6.65E-03
103GO:0006754: ATP biosynthetic process6.83E-03
104GO:0048589: developmental growth6.83E-03
105GO:0009056: catabolic process6.83E-03
106GO:0009407: toxin catabolic process7.11E-03
107GO:0007568: aging7.46E-03
108GO:0016573: histone acetylation7.67E-03
109GO:0009870: defense response signaling pathway, resistance gene-dependent8.55E-03
110GO:0048829: root cap development8.55E-03
111GO:0010192: mucilage biosynthetic process8.55E-03
112GO:0051555: flavonol biosynthetic process8.55E-03
113GO:0009773: photosynthetic electron transport in photosystem I9.46E-03
114GO:0000272: polysaccharide catabolic process9.46E-03
115GO:0009750: response to fructose9.46E-03
116GO:0000038: very long-chain fatty acid metabolic process9.46E-03
117GO:0016024: CDP-diacylglycerol biosynthetic process1.04E-02
118GO:0009926: auxin polar transport1.06E-02
119GO:0030048: actin filament-based movement1.14E-02
120GO:2000028: regulation of photoperiodism, flowering1.14E-02
121GO:0050826: response to freezing1.14E-02
122GO:0009725: response to hormone1.14E-02
123GO:0006094: gluconeogenesis1.14E-02
124GO:0009767: photosynthetic electron transport chain1.14E-02
125GO:0005986: sucrose biosynthetic process1.14E-02
126GO:0009636: response to toxic substance1.19E-02
127GO:0019253: reductive pentose-phosphate cycle1.24E-02
128GO:0010143: cutin biosynthetic process1.24E-02
129GO:0010167: response to nitrate1.34E-02
130GO:0005985: sucrose metabolic process1.34E-02
131GO:0006636: unsaturated fatty acid biosynthetic process1.45E-02
132GO:0010224: response to UV-B1.48E-02
133GO:0006338: chromatin remodeling1.56E-02
134GO:0007010: cytoskeleton organization1.56E-02
135GO:0009695: jasmonic acid biosynthetic process1.68E-02
136GO:0007017: microtubule-based process1.68E-02
137GO:0009768: photosynthesis, light harvesting in photosystem I1.68E-02
138GO:0019953: sexual reproduction1.68E-02
139GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.74E-02
140GO:0031408: oxylipin biosynthetic process1.79E-02
141GO:0003333: amino acid transmembrane transport1.79E-02
142GO:0080092: regulation of pollen tube growth1.91E-02
143GO:0009733: response to auxin1.92E-02
144GO:0009294: DNA mediated transformation2.03E-02
145GO:0009411: response to UV2.03E-02
146GO:0009742: brassinosteroid mediated signaling pathway2.16E-02
147GO:0055085: transmembrane transport2.36E-02
148GO:0042335: cuticle development2.42E-02
149GO:0080022: primary root development2.42E-02
150GO:0015991: ATP hydrolysis coupled proton transport2.42E-02
151GO:0048653: anther development2.42E-02
152GO:0008360: regulation of cell shape2.55E-02
153GO:0015986: ATP synthesis coupled proton transport2.68E-02
154GO:0007059: chromosome segregation2.68E-02
155GO:0009749: response to glucose2.82E-02
156GO:0019252: starch biosynthetic process2.82E-02
157GO:0008654: phospholipid biosynthetic process2.82E-02
158GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.96E-02
159GO:0008152: metabolic process3.07E-02
160GO:0048235: pollen sperm cell differentiation3.10E-02
161GO:0007264: small GTPase mediated signal transduction3.10E-02
162GO:0010090: trichome morphogenesis3.25E-02
163GO:1901657: glycosyl compound metabolic process3.25E-02
164GO:0046686: response to cadmium ion3.33E-02
165GO:0040008: regulation of growth3.36E-02
166GO:0009828: plant-type cell wall loosening3.39E-02
167GO:0007623: circadian rhythm3.52E-02
168GO:0051607: defense response to virus3.70E-02
169GO:0010029: regulation of seed germination4.00E-02
170GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.00E-02
171GO:0042128: nitrate assimilation4.16E-02
172GO:0009617: response to bacterium4.19E-02
173GO:0010411: xyloglucan metabolic process4.32E-02
174GO:0016049: cell growth4.48E-02
175GO:0016311: dephosphorylation4.48E-02
176GO:0009817: defense response to fungus, incompatible interaction4.65E-02
177GO:0030244: cellulose biosynthetic process4.65E-02
178GO:0018298: protein-chromophore linkage4.65E-02
179GO:0009832: plant-type cell wall biogenesis4.81E-02
180GO:0010311: lateral root formation4.81E-02
181GO:0048767: root hair elongation4.81E-02
182GO:0010218: response to far red light4.98E-02
RankGO TermAdjusted P value
1GO:0016210: naringenin-chalcone synthase activity0.00E+00
2GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
6GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
7GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
8GO:0047974: guanosine deaminase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0030795: jasmonate O-methyltransferase activity0.00E+00
11GO:0102078: methyl jasmonate methylesterase activity0.00E+00
12GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
15GO:0016719: carotene 7,8-desaturase activity0.00E+00
16GO:0016413: O-acetyltransferase activity5.01E-05
17GO:0045430: chalcone isomerase activity5.77E-05
18GO:0016757: transferase activity, transferring glycosyl groups1.38E-04
19GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.63E-04
20GO:0003838: sterol 24-C-methyltransferase activity2.97E-04
21GO:0051996: squalene synthase activity2.97E-04
22GO:0010313: phytochrome binding2.97E-04
23GO:0090448: glucosinolate:proton symporter activity2.97E-04
24GO:0045486: naringenin 3-dioxygenase activity2.97E-04
25GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.97E-04
26GO:0004013: adenosylhomocysteinase activity2.97E-04
27GO:0005200: structural constituent of cytoskeleton5.29E-04
28GO:0015250: water channel activity6.13E-04
29GO:0000064: L-ornithine transmembrane transporter activity6.50E-04
30GO:0004512: inositol-3-phosphate synthase activity6.50E-04
31GO:0048531: beta-1,3-galactosyltransferase activity6.50E-04
32GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.50E-04
33GO:0010291: carotene beta-ring hydroxylase activity6.50E-04
34GO:0042389: omega-3 fatty acid desaturase activity6.50E-04
35GO:0004047: aminomethyltransferase activity6.50E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.50E-04
37GO:0016758: transferase activity, transferring hexosyl groups8.41E-04
38GO:0004089: carbonate dehydratase activity9.08E-04
39GO:0004148: dihydrolipoyl dehydrogenase activity1.05E-03
40GO:0031683: G-protein beta/gamma-subunit complex binding1.05E-03
41GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.05E-03
42GO:0005457: GDP-fucose transmembrane transporter activity1.05E-03
43GO:0001664: G-protein coupled receptor binding1.05E-03
44GO:0003999: adenine phosphoribosyltransferase activity1.51E-03
45GO:0005460: UDP-glucose transmembrane transporter activity1.51E-03
46GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.51E-03
47GO:0001872: (1->3)-beta-D-glucan binding1.51E-03
48GO:0004375: glycine dehydrogenase (decarboxylating) activity1.51E-03
49GO:0048027: mRNA 5'-UTR binding1.51E-03
50GO:0015204: urea transmembrane transporter activity2.02E-03
51GO:0019905: syntaxin binding2.02E-03
52GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.02E-03
53GO:0010328: auxin influx transmembrane transporter activity2.02E-03
54GO:0017137: Rab GTPase binding2.58E-03
55GO:0004356: glutamate-ammonia ligase activity2.58E-03
56GO:0045431: flavonol synthase activity2.58E-03
57GO:0005459: UDP-galactose transmembrane transporter activity2.58E-03
58GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.19E-03
59GO:0102229: amylopectin maltohydrolase activity3.19E-03
60GO:0042578: phosphoric ester hydrolase activity3.19E-03
61GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.19E-03
62GO:0080030: methyl indole-3-acetate esterase activity3.19E-03
63GO:0051753: mannan synthase activity3.84E-03
64GO:0016161: beta-amylase activity3.84E-03
65GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.84E-03
66GO:0016722: oxidoreductase activity, oxidizing metal ions4.40E-03
67GO:0052689: carboxylic ester hydrolase activity4.47E-03
68GO:0043295: glutathione binding4.53E-03
69GO:0016621: cinnamoyl-CoA reductase activity4.53E-03
70GO:0004564: beta-fructofuranosidase activity5.26E-03
71GO:0030247: polysaccharide binding5.82E-03
72GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.03E-03
73GO:0003843: 1,3-beta-D-glucan synthase activity6.03E-03
74GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.83E-03
75GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.52E-03
76GO:0004575: sucrose alpha-glucosidase activity7.67E-03
77GO:0008017: microtubule binding7.70E-03
78GO:0005089: Rho guanyl-nucleotide exchange factor activity9.46E-03
79GO:0004860: protein kinase inhibitor activity9.46E-03
80GO:0046961: proton-transporting ATPase activity, rotational mechanism9.46E-03
81GO:0004364: glutathione transferase activity1.01E-02
82GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.24E-02
83GO:0016788: hydrolase activity, acting on ester bonds1.30E-02
84GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.45E-02
85GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.45E-02
86GO:0031409: pigment binding1.45E-02
87GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.45E-02
88GO:0031418: L-ascorbic acid binding1.56E-02
89GO:0004176: ATP-dependent peptidase activity1.79E-02
90GO:0004650: polygalacturonase activity1.86E-02
91GO:0022857: transmembrane transporter activity1.92E-02
92GO:0016760: cellulose synthase (UDP-forming) activity2.03E-02
93GO:0016787: hydrolase activity2.19E-02
94GO:0004871: signal transducer activity2.22E-02
95GO:0016829: lyase activity2.76E-02
96GO:0005507: copper ion binding2.79E-02
97GO:0019901: protein kinase binding2.82E-02
98GO:0004872: receptor activity2.82E-02
99GO:0016762: xyloglucan:xyloglucosyl transferase activity2.96E-02
100GO:0048038: quinone binding2.96E-02
101GO:0004518: nuclease activity3.10E-02
102GO:0051015: actin filament binding3.25E-02
103GO:0016791: phosphatase activity3.39E-02
104GO:0016759: cellulose synthase activity3.39E-02
105GO:0008483: transaminase activity3.55E-02
106GO:0008237: metallopeptidase activity3.55E-02
107GO:0016597: amino acid binding3.70E-02
108GO:0008194: UDP-glycosyltransferase activity3.93E-02
109GO:0016168: chlorophyll binding4.00E-02
110GO:0016798: hydrolase activity, acting on glycosyl bonds4.32E-02
111GO:0102483: scopolin beta-glucosidase activity4.32E-02
112GO:0005096: GTPase activator activity4.81E-02
113GO:0004222: metalloendopeptidase activity4.98E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall1.01E-05
2GO:0005794: Golgi apparatus3.69E-05
3GO:0009941: chloroplast envelope4.16E-05
4GO:0031225: anchored component of membrane4.93E-05
5GO:0046658: anchored component of plasma membrane6.92E-05
6GO:0005886: plasma membrane9.94E-05
7GO:0000139: Golgi membrane2.90E-04
8GO:0009344: nitrite reductase complex [NAD(P)H]2.97E-04
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.41E-04
10GO:0005576: extracellular region4.70E-04
11GO:0048046: apoplast5.35E-04
12GO:0016021: integral component of membrane5.65E-04
13GO:0042170: plastid membrane6.50E-04
14GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain6.50E-04
15GO:0009506: plasmodesma9.97E-04
16GO:0009509: chromoplast1.05E-03
17GO:0042406: extrinsic component of endoplasmic reticulum membrane1.05E-03
18GO:0005960: glycine cleavage complex1.51E-03
19GO:0005775: vacuolar lumen1.51E-03
20GO:0005618: cell wall1.84E-03
21GO:0009507: chloroplast2.28E-03
22GO:0042807: central vacuole4.53E-03
23GO:0000123: histone acetyltransferase complex4.53E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex6.03E-03
25GO:0000326: protein storage vacuole6.03E-03
26GO:0045298: tubulin complex6.83E-03
27GO:0009705: plant-type vacuole membrane7.26E-03
28GO:0000786: nucleosome7.81E-03
29GO:0016324: apical plasma membrane8.55E-03
30GO:0055028: cortical microtubule8.55E-03
31GO:0009535: chloroplast thylakoid membrane8.89E-03
32GO:0005765: lysosomal membrane9.46E-03
33GO:0048471: perinuclear region of cytoplasm9.46E-03
34GO:0031902: late endosome membrane9.73E-03
35GO:0005773: vacuole9.98E-03
36GO:0019013: viral nucleocapsid1.14E-02
37GO:0005856: cytoskeleton1.19E-02
38GO:0030095: chloroplast photosystem II1.24E-02
39GO:0030176: integral component of endoplasmic reticulum membrane1.34E-02
40GO:0005753: mitochondrial proton-transporting ATP synthase complex1.34E-02
41GO:0030076: light-harvesting complex1.34E-02
42GO:0009570: chloroplast stroma1.68E-02
43GO:0009654: photosystem II oxygen evolving complex1.68E-02
44GO:0009534: chloroplast thylakoid2.19E-02
45GO:0010287: plastoglobule2.42E-02
46GO:0009543: chloroplast thylakoid lumen2.55E-02
47GO:0009522: photosystem I2.68E-02
48GO:0009523: photosystem II2.82E-02
49GO:0019898: extrinsic component of membrane2.82E-02
50GO:0010319: stromule3.55E-02
51GO:0030529: intracellular ribonucleoprotein complex3.85E-02
52GO:0005887: integral component of plasma membrane3.97E-02
Gene type



Gene DE type