GO Enrichment Analysis of Co-expressed Genes with
AT3G62690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 2 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 3 | GO:0018298: protein-chromophore linkage | 2.17E-09 |
| 4 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.90E-09 |
| 5 | GO:0010114: response to red light | 8.66E-09 |
| 6 | GO:0009645: response to low light intensity stimulus | 2.76E-08 |
| 7 | GO:0010218: response to far red light | 2.58E-07 |
| 8 | GO:0009637: response to blue light | 3.54E-07 |
| 9 | GO:0007623: circadian rhythm | 8.65E-06 |
| 10 | GO:0000160: phosphorelay signal transduction system | 1.45E-05 |
| 11 | GO:0009644: response to high light intensity | 3.37E-05 |
| 12 | GO:0015812: gamma-aminobutyric acid transport | 3.50E-05 |
| 13 | GO:0032958: inositol phosphate biosynthetic process | 3.50E-05 |
| 14 | GO:0010362: negative regulation of anion channel activity by blue light | 3.50E-05 |
| 15 | GO:0010155: regulation of proton transport | 8.78E-05 |
| 16 | GO:0051170: nuclear import | 8.78E-05 |
| 17 | GO:0048511: rhythmic process | 9.30E-05 |
| 18 | GO:0010017: red or far-red light signaling pathway | 1.03E-04 |
| 19 | GO:1902448: positive regulation of shade avoidance | 1.52E-04 |
| 20 | GO:0009416: response to light stimulus | 1.87E-04 |
| 21 | GO:0006351: transcription, DNA-templated | 1.92E-04 |
| 22 | GO:0006020: inositol metabolic process | 2.25E-04 |
| 23 | GO:0044211: CTP salvage | 2.25E-04 |
| 24 | GO:0006355: regulation of transcription, DNA-templated | 2.32E-04 |
| 25 | GO:0030104: water homeostasis | 3.05E-04 |
| 26 | GO:0009765: photosynthesis, light harvesting | 3.05E-04 |
| 27 | GO:2000306: positive regulation of photomorphogenesis | 3.05E-04 |
| 28 | GO:0010600: regulation of auxin biosynthetic process | 3.05E-04 |
| 29 | GO:0044206: UMP salvage | 3.05E-04 |
| 30 | GO:0009904: chloroplast accumulation movement | 3.89E-04 |
| 31 | GO:0016123: xanthophyll biosynthetic process | 3.89E-04 |
| 32 | GO:0043097: pyrimidine nucleoside salvage | 3.89E-04 |
| 33 | GO:0044550: secondary metabolite biosynthetic process | 4.74E-04 |
| 34 | GO:0045962: positive regulation of development, heterochronic | 4.78E-04 |
| 35 | GO:0006206: pyrimidine nucleobase metabolic process | 4.78E-04 |
| 36 | GO:0015979: photosynthesis | 5.04E-04 |
| 37 | GO:0009903: chloroplast avoidance movement | 5.70E-04 |
| 38 | GO:0009861: jasmonic acid and ethylene-dependent systemic resistance | 5.70E-04 |
| 39 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 5.70E-04 |
| 40 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 5.70E-04 |
| 41 | GO:0009640: photomorphogenesis | 6.19E-04 |
| 42 | GO:0010161: red light signaling pathway | 6.66E-04 |
| 43 | GO:0009769: photosynthesis, light harvesting in photosystem II | 6.66E-04 |
| 44 | GO:0010078: maintenance of root meristem identity | 7.68E-04 |
| 45 | GO:0009704: de-etiolation | 7.68E-04 |
| 46 | GO:0010928: regulation of auxin mediated signaling pathway | 7.68E-04 |
| 47 | GO:0010099: regulation of photomorphogenesis | 8.71E-04 |
| 48 | GO:0009827: plant-type cell wall modification | 8.71E-04 |
| 49 | GO:0090333: regulation of stomatal closure | 9.78E-04 |
| 50 | GO:0009638: phototropism | 1.09E-03 |
| 51 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 1.09E-03 |
| 52 | GO:0009688: abscisic acid biosynthetic process | 1.20E-03 |
| 53 | GO:0009641: shade avoidance | 1.20E-03 |
| 54 | GO:0030148: sphingolipid biosynthetic process | 1.32E-03 |
| 55 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.57E-03 |
| 56 | GO:0009785: blue light signaling pathway | 1.57E-03 |
| 57 | GO:0009266: response to temperature stimulus | 1.70E-03 |
| 58 | GO:0090351: seedling development | 1.84E-03 |
| 59 | GO:0003333: amino acid transmembrane transport | 2.41E-03 |
| 60 | GO:0009269: response to desiccation | 2.41E-03 |
| 61 | GO:0071215: cellular response to abscisic acid stimulus | 2.71E-03 |
| 62 | GO:0070417: cellular response to cold | 3.03E-03 |
| 63 | GO:0010182: sugar mediated signaling pathway | 3.36E-03 |
| 64 | GO:0009723: response to ethylene | 3.45E-03 |
| 65 | GO:0006814: sodium ion transport | 3.53E-03 |
| 66 | GO:0080167: response to karrikin | 3.70E-03 |
| 67 | GO:0046777: protein autophosphorylation | 3.95E-03 |
| 68 | GO:1901657: glycosyl compound metabolic process | 4.24E-03 |
| 69 | GO:0045892: negative regulation of transcription, DNA-templated | 4.48E-03 |
| 70 | GO:0009409: response to cold | 5.01E-03 |
| 71 | GO:0006629: lipid metabolic process | 5.43E-03 |
| 72 | GO:0048573: photoperiodism, flowering | 5.58E-03 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 5.58E-03 |
| 74 | GO:0009817: defense response to fungus, incompatible interaction | 5.99E-03 |
| 75 | GO:0010119: regulation of stomatal movement | 6.61E-03 |
| 76 | GO:0006865: amino acid transport | 6.83E-03 |
| 77 | GO:0051707: response to other organism | 8.41E-03 |
| 78 | GO:0008643: carbohydrate transport | 8.88E-03 |
| 79 | GO:0009965: leaf morphogenesis | 9.12E-03 |
| 80 | GO:0006812: cation transport | 9.86E-03 |
| 81 | GO:0009585: red, far-red light phototransduction | 1.04E-02 |
| 82 | GO:0009909: regulation of flower development | 1.11E-02 |
| 83 | GO:0055085: transmembrane transport | 1.22E-02 |
| 84 | GO:0055114: oxidation-reduction process | 1.23E-02 |
| 85 | GO:0009624: response to nematode | 1.33E-02 |
| 86 | GO:0009651: response to salt stress | 1.59E-02 |
| 87 | GO:0009058: biosynthetic process | 1.62E-02 |
| 88 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.02E-02 |
| 89 | GO:0009658: chloroplast organization | 2.67E-02 |
| 90 | GO:0006970: response to osmotic stress | 2.82E-02 |
| 91 | GO:0007049: cell cycle | 2.89E-02 |
| 92 | GO:0005975: carbohydrate metabolic process | 2.97E-02 |
| 93 | GO:0048366: leaf development | 3.00E-02 |
| 94 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.19E-02 |
| 95 | GO:0016192: vesicle-mediated transport | 3.23E-02 |
| 96 | GO:0006886: intracellular protein transport | 3.62E-02 |
| 97 | GO:0009408: response to heat | 4.11E-02 |
| 98 | GO:0009737: response to abscisic acid | 4.16E-02 |
| 99 | GO:0006468: protein phosphorylation | 4.49E-02 |
| 100 | GO:0016310: phosphorylation | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0019912: cyclin-dependent protein kinase activating kinase activity | 0.00E+00 |
| 5 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 7 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 8 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 10 | GO:0031409: pigment binding | 4.21E-09 |
| 11 | GO:0016168: chlorophyll binding | 1.26E-07 |
| 12 | GO:0052631: sphingolipid delta-8 desaturase activity | 3.50E-05 |
| 13 | GO:0015185: gamma-aminobutyric acid transmembrane transporter activity | 3.50E-05 |
| 14 | GO:0033857: diphosphoinositol-pentakisphosphate kinase activity | 3.50E-05 |
| 15 | GO:0000829: inositol heptakisphosphate kinase activity | 3.50E-05 |
| 16 | GO:0080079: cellobiose glucosidase activity | 3.50E-05 |
| 17 | GO:0000828: inositol hexakisphosphate kinase activity | 3.50E-05 |
| 18 | GO:0015180: L-alanine transmembrane transporter activity | 8.78E-05 |
| 19 | GO:0009882: blue light photoreceptor activity | 2.25E-04 |
| 20 | GO:0015189: L-lysine transmembrane transporter activity | 2.25E-04 |
| 21 | GO:0015181: arginine transmembrane transporter activity | 2.25E-04 |
| 22 | GO:0000156: phosphorelay response regulator activity | 2.30E-04 |
| 23 | GO:0004845: uracil phosphoribosyltransferase activity | 3.05E-04 |
| 24 | GO:0005313: L-glutamate transmembrane transporter activity | 3.05E-04 |
| 25 | GO:0015562: efflux transmembrane transporter activity | 4.78E-04 |
| 26 | GO:0004849: uridine kinase activity | 5.70E-04 |
| 27 | GO:0009927: histidine phosphotransfer kinase activity | 5.70E-04 |
| 28 | GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity | 8.71E-04 |
| 29 | GO:0015171: amino acid transmembrane transporter activity | 9.06E-04 |
| 30 | GO:0000989: transcription factor activity, transcription factor binding | 9.78E-04 |
| 31 | GO:0071949: FAD binding | 9.78E-04 |
| 32 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.20E-03 |
| 33 | GO:0047372: acylglycerol lipase activity | 1.32E-03 |
| 34 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.46E-03 |
| 35 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.57E-03 |
| 36 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.57E-03 |
| 37 | GO:0000155: phosphorelay sensor kinase activity | 1.57E-03 |
| 38 | GO:0004565: beta-galactosidase activity | 1.57E-03 |
| 39 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.75E-03 |
| 40 | GO:0003712: transcription cofactor activity | 1.84E-03 |
| 41 | GO:0015297: antiporter activity | 1.86E-03 |
| 42 | GO:0008324: cation transmembrane transporter activity | 2.26E-03 |
| 43 | GO:0003677: DNA binding | 2.62E-03 |
| 44 | GO:0008514: organic anion transmembrane transporter activity | 2.87E-03 |
| 45 | GO:0005506: iron ion binding | 3.35E-03 |
| 46 | GO:0010181: FMN binding | 3.53E-03 |
| 47 | GO:0004497: monooxygenase activity | 3.70E-03 |
| 48 | GO:0005515: protein binding | 4.26E-03 |
| 49 | GO:0042803: protein homodimerization activity | 4.62E-03 |
| 50 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 4.76E-03 |
| 51 | GO:0004672: protein kinase activity | 5.56E-03 |
| 52 | GO:0102483: scopolin beta-glucosidase activity | 5.58E-03 |
| 53 | GO:0046872: metal ion binding | 5.95E-03 |
| 54 | GO:0020037: heme binding | 6.09E-03 |
| 55 | GO:0004674: protein serine/threonine kinase activity | 6.36E-03 |
| 56 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 6.40E-03 |
| 57 | GO:0008422: beta-glucosidase activity | 7.49E-03 |
| 58 | GO:0015293: symporter activity | 9.12E-03 |
| 59 | GO:0016301: kinase activity | 1.27E-02 |
| 60 | GO:0022857: transmembrane transporter activity | 1.27E-02 |
| 61 | GO:0019825: oxygen binding | 1.38E-02 |
| 62 | GO:0015144: carbohydrate transmembrane transporter activity | 1.77E-02 |
| 63 | GO:0005351: sugar:proton symporter activity | 1.93E-02 |
| 64 | GO:0042802: identical protein binding | 2.32E-02 |
| 65 | GO:0008270: zinc ion binding | 2.55E-02 |
| 66 | GO:0043565: sequence-specific DNA binding | 2.70E-02 |
| 67 | GO:0005524: ATP binding | 3.38E-02 |
| 68 | GO:0004519: endonuclease activity | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009522: photosystem I | 3.38E-08 |
| 2 | GO:0030076: light-harvesting complex | 5.91E-07 |
| 3 | GO:0010287: plastoglobule | 3.89E-06 |
| 4 | GO:0009523: photosystem II | 3.97E-06 |
| 5 | GO:0009579: thylakoid | 2.30E-05 |
| 6 | GO:0009534: chloroplast thylakoid | 2.35E-05 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 5.36E-05 |
| 8 | GO:0009941: chloroplast envelope | 3.01E-04 |
| 9 | GO:0009898: cytoplasmic side of plasma membrane | 3.05E-04 |
| 10 | GO:0009517: PSII associated light-harvesting complex II | 3.05E-04 |
| 11 | GO:0016020: membrane | 5.51E-04 |
| 12 | GO:0009986: cell surface | 6.66E-04 |
| 13 | GO:0016021: integral component of membrane | 1.09E-03 |
| 14 | GO:0031966: mitochondrial membrane | 9.86E-03 |
| 15 | GO:0016607: nuclear speck | 1.19E-02 |
| 16 | GO:0005623: cell | 1.59E-02 |
| 17 | GO:0031969: chloroplast membrane | 3.11E-02 |
| 18 | GO:0009507: chloroplast | 3.86E-02 |