co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051238: sequestering of metal ion	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0080052: response to histidine	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:0080053: response to phenylalanine	0.00E+00
6	GO:0006793: phosphorus metabolic process	0.00E+00
7	GO:0010200: response to chitin	5.18E-06
8	GO:0006564: L-serine biosynthetic process	1.85E-05
9	GO:0080173: male-female gamete recognition during double fertilization	1.14E-04
10	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.14E-04
11	GO:0033306: phytol metabolic process	1.14E-04
12	GO:0051592: response to calcium ion	2.65E-04
13	GO:0090057: root radial pattern formation	2.65E-04
14	GO:0019521: D-gluconate metabolic process	2.65E-04
15	GO:0042939: tripeptide transport	2.65E-04
16	GO:0070588: calcium ion transmembrane transport	3.08E-04
17	GO:0009636: response to toxic substance	3.35E-04
18	GO:0006855: drug transmembrane transport	3.52E-04
19	GO:0010351: lithium ion transport	4.38E-04
20	GO:0009410: response to xenobiotic stimulus	4.38E-04
21	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.38E-04
22	GO:0034051: negative regulation of plant-type hypersensitive response	4.38E-04
23	GO:0010359: regulation of anion channel activity	4.38E-04
24	GO:0071456: cellular response to hypoxia	5.07E-04
25	GO:0009814: defense response, incompatible interaction	5.07E-04
26	GO:0006882: cellular zinc ion homeostasis	6.29E-04
27	GO:0046836: glycolipid transport	6.29E-04
28	GO:0048194: Golgi vesicle budding	6.29E-04
29	GO:0042938: dipeptide transport	8.35E-04
30	GO:0046345: abscisic acid catabolic process	8.35E-04
31	GO:0006536: glutamate metabolic process	8.35E-04
32	GO:0002238: response to molecule of fungal origin	1.29E-03
33	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.29E-03
34	GO:0015691: cadmium ion transport	1.29E-03
35	GO:0060918: auxin transport	1.29E-03
36	GO:1902456: regulation of stomatal opening	1.29E-03
37	GO:0009117: nucleotide metabolic process	1.29E-03
38	GO:0009737: response to abscisic acid	1.49E-03
39	GO:0071470: cellular response to osmotic stress	1.54E-03
40	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.54E-03
41	GO:0050790: regulation of catalytic activity	1.81E-03
42	GO:0006744: ubiquinone biosynthetic process	1.81E-03
43	GO:0030026: cellular manganese ion homeostasis	1.81E-03
44	GO:0009407: toxin catabolic process	1.86E-03
45	GO:0010043: response to zinc ion	1.95E-03
46	GO:0010119: regulation of stomatal movement	1.95E-03
47	GO:0010928: regulation of auxin mediated signaling pathway	2.09E-03
48	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.09E-03
49	GO:0043068: positive regulation of programmed cell death	2.09E-03
50	GO:0043562: cellular response to nitrogen levels	2.39E-03
51	GO:0017004: cytochrome complex assembly	2.39E-03
52	GO:0015996: chlorophyll catabolic process	2.39E-03
53	GO:0010497: plasmodesmata-mediated intercellular transport	2.39E-03
54	GO:0006098: pentose-phosphate shunt	2.70E-03
55	GO:0019432: triglyceride biosynthetic process	2.70E-03
56	GO:0051865: protein autoubiquitination	2.70E-03
57	GO:0043067: regulation of programmed cell death	3.02E-03
58	GO:2000280: regulation of root development	3.02E-03
59	GO:0006508: proteolysis	3.07E-03
60	GO:0006511: ubiquitin-dependent protein catabolic process	3.33E-03
61	GO:0055062: phosphate ion homeostasis	3.36E-03
62	GO:0006032: chitin catabolic process	3.36E-03
63	GO:0006812: cation transport	3.43E-03
64	GO:0000272: polysaccharide catabolic process	3.71E-03
65	GO:0048229: gametophyte development	3.71E-03
66	GO:0051603: proteolysis involved in cellular protein catabolic process	3.80E-03
67	GO:0012501: programmed cell death	4.06E-03
68	GO:0016024: CDP-diacylglycerol biosynthetic process	4.06E-03
69	GO:2000028: regulation of photoperiodism, flowering	4.43E-03
70	GO:0010143: cutin biosynthetic process	4.81E-03
71	GO:0042343: indole glucosinolate metabolic process	5.21E-03
72	GO:0009624: response to nematode	5.21E-03
73	GO:0000162: tryptophan biosynthetic process	5.61E-03
74	GO:0034976: response to endoplasmic reticulum stress	5.61E-03
75	GO:0009863: salicylic acid mediated signaling pathway	6.03E-03
76	GO:0080147: root hair cell development	6.03E-03
77	GO:0006874: cellular calcium ion homeostasis	6.45E-03
78	GO:0016998: cell wall macromolecule catabolic process	6.89E-03
79	GO:0098542: defense response to other organism	6.89E-03
80	GO:0009845: seed germination	7.06E-03
81	GO:0030433: ubiquitin-dependent ERAD pathway	7.34E-03
82	GO:0009561: megagametogenesis	8.26E-03
83	GO:0006817: phosphate ion transport	8.26E-03
84	GO:0010091: trichome branching	8.26E-03
85	GO:0015031: protein transport	8.79E-03
86	GO:0010197: polar nucleus fusion	9.73E-03
87	GO:0009958: positive gravitropism	9.73E-03
88	GO:0006885: regulation of pH	9.73E-03
89	GO:0016567: protein ubiquitination	1.01E-02
90	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.01E-02
91	GO:0006814: sodium ion transport	1.02E-02
92	GO:0006623: protein targeting to vacuole	1.08E-02
93	GO:0009617: response to bacterium	1.08E-02
94	GO:0046686: response to cadmium ion	1.19E-02
95	GO:0009816: defense response to bacterium, incompatible interaction	1.52E-02
96	GO:0016311: dephosphorylation	1.70E-02
97	GO:0016049: cell growth	1.70E-02
98	GO:0080167: response to karrikin	1.74E-02
99	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
100	GO:0016192: vesicle-mediated transport	1.83E-02
101	GO:0046777: protein autophosphorylation	1.86E-02
102	GO:0044550: secondary metabolite biosynthetic process	1.89E-02
103	GO:0048527: lateral root development	1.96E-02
104	GO:0006099: tricarboxylic acid cycle	2.16E-02
105	GO:0042742: defense response to bacterium	2.45E-02
106	GO:0009846: pollen germination	2.94E-02
107	GO:0042538: hyperosmotic salinity response	2.94E-02
108	GO:0006813: potassium ion transport	3.09E-02
109	GO:0010224: response to UV-B	3.17E-02
110	GO:0006857: oligopeptide transport	3.25E-02
111	GO:0048316: seed development	3.57E-02
112	GO:0009734: auxin-activated signaling pathway	3.61E-02
113	GO:0009626: plant-type hypersensitive response	3.65E-02
114	GO:0018105: peptidyl-serine phosphorylation	4.06E-02
115	GO:0009738: abscisic acid-activated signaling pathway	4.38E-02
116	GO:0009555: pollen development	4.53E-02
117	GO:0006468: protein phosphorylation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0004617: phosphoglycerate dehydrogenase activity	6.64E-07
2	GO:0004298: threonine-type endopeptidase activity	1.80E-05
3	GO:0008233: peptidase activity	5.86E-05
4	GO:0016920: pyroglutamyl-peptidase activity	1.14E-04
5	GO:0004048: anthranilate phosphoribosyltransferase activity	1.14E-04
6	GO:0015238: drug transmembrane transporter activity	1.56E-04
7	GO:0005388: calcium-transporting ATPase activity	2.41E-04
8	GO:0042937: tripeptide transporter activity	2.65E-04
9	GO:0004385: guanylate kinase activity	2.65E-04
10	GO:0050736: O-malonyltransferase activity	2.65E-04
11	GO:0004190: aspartic-type endopeptidase activity	3.08E-04
12	GO:0005215: transporter activity	4.05E-04
13	GO:0004351: glutamate decarboxylase activity	6.29E-04
14	GO:0017089: glycolipid transporter activity	6.29E-04
15	GO:0004108: citrate (Si)-synthase activity	6.29E-04
16	GO:0015368: calcium:cation antiporter activity	8.35E-04
17	GO:0004737: pyruvate decarboxylase activity	8.35E-04
18	GO:0042936: dipeptide transporter activity	8.35E-04
19	GO:0051861: glycolipid binding	8.35E-04
20	GO:0015369: calcium:proton antiporter activity	8.35E-04
21	GO:0005516: calmodulin binding	8.67E-04
22	GO:0005496: steroid binding	1.05E-03
23	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.05E-03
24	GO:0010294: abscisic acid glucosyltransferase activity	1.05E-03
25	GO:0015297: antiporter activity	1.23E-03
26	GO:0016597: amino acid binding	1.23E-03
27	GO:0036402: proteasome-activating ATPase activity	1.29E-03
28	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.29E-03
29	GO:0030976: thiamine pyrophosphate binding	1.29E-03
30	GO:0004526: ribonuclease P activity	1.29E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.29E-03
32	GO:0004656: procollagen-proline 4-dioxygenase activity	1.54E-03
33	GO:0004012: phospholipid-translocating ATPase activity	1.54E-03
34	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.54E-03
35	GO:0004144: diacylglycerol O-acyltransferase activity	1.54E-03
36	GO:0008320: protein transmembrane transporter activity	1.81E-03
37	GO:0016831: carboxy-lyase activity	1.81E-03
38	GO:0030145: manganese ion binding	1.95E-03
39	GO:0015491: cation:cation antiporter activity	2.09E-03
40	GO:0004564: beta-fructofuranosidase activity	2.09E-03
41	GO:0004364: glutathione transferase activity	2.63E-03
42	GO:0004575: sucrose alpha-glucosidase activity	3.02E-03
43	GO:0051287: NAD binding	3.30E-03
44	GO:0004568: chitinase activity	3.36E-03
45	GO:0008559: xenobiotic-transporting ATPase activity	3.71E-03
46	GO:0045735: nutrient reservoir activity	4.34E-03
47	GO:0005262: calcium channel activity	4.43E-03
48	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.43E-03
49	GO:0017025: TBP-class protein binding	5.21E-03
50	GO:0008061: chitin binding	5.21E-03
51	GO:0005509: calcium ion binding	5.40E-03
52	GO:0008134: transcription factor binding	6.03E-03
53	GO:0003756: protein disulfide isomerase activity	8.26E-03
54	GO:0005451: monovalent cation:proton antiporter activity	9.23E-03
55	GO:0005524: ATP binding	9.33E-03
56	GO:0004842: ubiquitin-protein transferase activity	9.97E-03
57	GO:0015299: solute:proton antiporter activity	1.02E-02
58	GO:0004197: cysteine-type endopeptidase activity	1.18E-02
59	GO:0015385: sodium:proton antiporter activity	1.24E-02
60	GO:0016791: phosphatase activity	1.29E-02
61	GO:0016740: transferase activity	1.29E-02
62	GO:0000287: magnesium ion binding	1.37E-02
63	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.58E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	1.64E-02
65	GO:0061630: ubiquitin protein ligase activity	1.83E-02
66	GO:0004222: metalloendopeptidase activity	1.89E-02
67	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.96E-02
68	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.09E-02
69	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.16E-02
70	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.25E-02
71	GO:0004674: protein serine/threonine kinase activity	2.31E-02
72	GO:0043565: sequence-specific DNA binding	2.46E-02
73	GO:0031625: ubiquitin protein ligase binding	3.33E-02
74	GO:0008234: cysteine-type peptidase activity	3.33E-02
75	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.73E-02
76	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.73E-02
77	GO:0022857: transmembrane transporter activity	3.81E-02
78	GO:0016746: transferase activity, transferring acyl groups	4.06E-02
79	GO:0020037: heme binding	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005839: proteasome core complex	1.80E-05
4	GO:0000502: proteasome complex	3.25E-05
5	GO:0019773: proteasome core complex, alpha-subunit complex	8.78E-05
6	GO:0030134: ER to Golgi transport vesicle	2.65E-04
7	GO:0005829: cytosol	5.62E-04
8	GO:0005783: endoplasmic reticulum	5.80E-04
9	GO:0030658: transport vesicle membrane	6.29E-04
10	GO:0030660: Golgi-associated vesicle membrane	8.35E-04
11	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	8.35E-04
12	GO:0016020: membrane	9.07E-04
13	GO:0005746: mitochondrial respiratory chain	1.05E-03
14	GO:0000164: protein phosphatase type 1 complex	1.05E-03
15	GO:0032580: Golgi cisterna membrane	1.10E-03
16	GO:0005886: plasma membrane	1.23E-03
17	GO:0031597: cytosolic proteasome complex	1.54E-03
18	GO:0016021: integral component of membrane	1.61E-03
19	GO:0031595: nuclear proteasome complex	1.81E-03
20	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.09E-03
21	GO:0000326: protein storage vacuole	2.39E-03
22	GO:0005773: vacuole	2.92E-03
23	GO:0008540: proteasome regulatory particle, base subcomplex	3.02E-03
24	GO:0005765: lysosomal membrane	3.71E-03
25	GO:0005802: trans-Golgi network	4.28E-03
26	GO:0031012: extracellular matrix	4.43E-03
27	GO:0005764: lysosome	4.81E-03
28	GO:0005768: endosome	5.20E-03
29	GO:0005770: late endosome	9.73E-03
30	GO:0005774: vacuolar membrane	1.27E-02
31	GO:0005788: endoplasmic reticulum lumen	1.52E-02
32	GO:0000151: ubiquitin ligase complex	1.77E-02
33	GO:0000325: plant-type vacuole	1.96E-02
34	GO:0005819: spindle	2.22E-02
35	GO:0043231: intracellular membrane-bounded organelle	2.83E-02
36	GO:0031966: mitochondrial membrane	2.94E-02
37	GO:0005887: integral component of plasma membrane	3.48E-02
38	GO:0005794: Golgi apparatus	3.80E-02
39	GO:0009706: chloroplast inner membrane	3.98E-02
40	GO:0048046: apoplast	4.18E-02
41	GO:0022626: cytosolic ribosome	4.34E-02
42	GO:0010287: plastoglobule	4.49E-02
43	GO:0009524: phragmoplast	4.84E-02