co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017126: nucleologenesis	0.00E+00
2	GO:0039694: viral RNA genome replication	0.00E+00
3	GO:0018279: protein N-linked glycosylation via asparagine	4.42E-07
4	GO:0080178: 5-carbamoylmethyl uridine residue modification	1.21E-05
5	GO:0043687: post-translational protein modification	1.21E-05
6	GO:0031538: negative regulation of anthocyanin metabolic process	3.21E-05
7	GO:0034470: ncRNA processing	3.21E-05
8	GO:0032784: regulation of DNA-templated transcription, elongation	5.78E-05
9	GO:0048530: fruit morphogenesis	8.79E-05
10	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.22E-04
11	GO:0002098: tRNA wobble uridine modification	1.22E-04
12	GO:0047484: regulation of response to osmotic stress	1.98E-04
13	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.39E-04
14	GO:0006400: tRNA modification	2.82E-04
15	GO:0010928: regulation of auxin mediated signaling pathway	3.27E-04
16	GO:0035265: organ growth	3.27E-04
17	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.27E-04
18	GO:2000024: regulation of leaf development	4.21E-04
19	GO:0009790: embryo development	4.69E-04
20	GO:0043067: regulation of programmed cell death	4.69E-04
21	GO:0006913: nucleocytoplasmic transport	5.71E-04
22	GO:0051302: regulation of cell division	9.61E-04
23	GO:0015992: proton transport	1.02E-03
24	GO:0071215: cellular response to abscisic acid stimulus	1.14E-03
25	GO:0008284: positive regulation of cell proliferation	1.27E-03
26	GO:0008033: tRNA processing	1.34E-03
27	GO:0010501: RNA secondary structure unwinding	1.34E-03
28	GO:0080156: mitochondrial mRNA modification	1.61E-03
29	GO:0016579: protein deubiquitination	1.98E-03
30	GO:0016126: sterol biosynthetic process	2.06E-03
31	GO:0006897: endocytosis	3.24E-03
32	GO:0008283: cell proliferation	3.43E-03
33	GO:0009965: leaf morphogenesis	3.71E-03
34	GO:0009664: plant-type cell wall organization	4.00E-03
35	GO:0006417: regulation of translation	4.50E-03
36	GO:0006413: translational initiation	7.42E-03
37	GO:0006810: transport	7.65E-03
38	GO:0009826: unidimensional cell growth	1.03E-02
39	GO:0042254: ribosome biogenesis	1.07E-02
40	GO:0006886: intracellular protein transport	1.43E-02
41	GO:0009651: response to salt stress	1.76E-02
42	GO:0009734: auxin-activated signaling pathway	2.07E-02
43	GO:0009738: abscisic acid-activated signaling pathway	2.38E-02
44	GO:0006511: ubiquitin-dependent protein catabolic process	3.04E-02
45	GO:0009414: response to water deprivation	3.97E-02
46	GO:0006979: response to oxidative stress	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0004631: phosphomevalonate kinase activity	0.00E+00
2	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.42E-07
3	GO:0070181: small ribosomal subunit rRNA binding	5.78E-05
4	GO:0009678: hydrogen-translocating pyrophosphatase activity	8.79E-05
5	GO:0004576: oligosaccharyl transferase activity	1.22E-04
6	GO:0004427: inorganic diphosphatase activity	2.82E-04
7	GO:0003723: RNA binding	2.93E-04
8	GO:0004713: protein tyrosine kinase activity	5.20E-04
9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.02E-03
10	GO:0003729: mRNA binding	1.05E-03
11	GO:0010181: FMN binding	1.47E-03
12	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.61E-03
13	GO:0004004: ATP-dependent RNA helicase activity	2.30E-03
14	GO:0003697: single-stranded DNA binding	2.89E-03
15	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.06E-03
16	GO:0051539: 4 iron, 4 sulfur cluster binding	3.15E-03
17	GO:0043621: protein self-association	3.61E-03
18	GO:0016746: transferase activity, transferring acyl groups	5.45E-03
19	GO:0008026: ATP-dependent helicase activity	5.56E-03
20	GO:0004386: helicase activity	5.67E-03
21	GO:0005524: ATP binding	5.70E-03
22	GO:0016829: lyase activity	6.58E-03
23	GO:0008565: protein transporter activity	7.06E-03
24	GO:0003743: translation initiation factor activity	8.69E-03
25	GO:0008289: lipid binding	2.05E-02
26	GO:0003676: nucleic acid binding	2.16E-02
27	GO:0016887: ATPase activity	2.22E-02
28	GO:0000166: nucleotide binding	2.44E-02
29	GO:0005507: copper ion binding	3.14E-02
30	GO:0005215: transporter activity	4.34E-02
31	GO:0016491: oxidoreductase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0008250: oligosaccharyltransferase complex	4.42E-07
3	GO:0033588: Elongator holoenzyme complex	8.79E-05
4	GO:0030131: clathrin adaptor complex	3.27E-04
5	GO:0032040: small-subunit processome	6.23E-04
6	GO:0043234: protein complex	8.44E-04
7	GO:0005905: clathrin-coated pit	1.02E-03
8	GO:0005730: nucleolus	1.23E-03
9	GO:0030529: intracellular ribonucleoprotein complex	2.06E-03
10	GO:0005774: vacuolar membrane	3.03E-03
11	GO:0005654: nucleoplasm	6.12E-03
12	GO:0005783: endoplasmic reticulum	7.36E-03
13	GO:0046658: anchored component of plasma membrane	9.48E-03
14	GO:0005829: cytosol	1.03E-02
15	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.13E-02
16	GO:0005618: cell wall	2.08E-02
17	GO:0005794: Golgi apparatus	2.43E-02
18	GO:0005777: peroxisome	2.69E-02
19	GO:0005773: vacuole	2.78E-02
20	GO:0005802: trans-Golgi network	3.42E-02
21	GO:0005622: intracellular	3.68E-02
22	GO:0005768: endosome	3.75E-02
23	GO:0005737: cytoplasm	3.81E-02
24	GO:0009505: plant-type cell wall	4.74E-02