co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0019484: beta-alanine catabolic process	0.00E+00
5	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
6	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
7	GO:0010184: cytokinin transport	1.23E-04
8	GO:0071366: cellular response to indolebutyric acid stimulus	1.23E-04
9	GO:0046520: sphingoid biosynthetic process	1.23E-04
10	GO:0009865: pollen tube adhesion	1.23E-04
11	GO:0006540: glutamate decarboxylation to succinate	1.23E-04
12	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.23E-04
13	GO:0046167: glycerol-3-phosphate biosynthetic process	1.23E-04
14	GO:0009450: gamma-aminobutyric acid catabolic process	1.23E-04
15	GO:0052544: defense response by callose deposition in cell wall	2.05E-04
16	GO:0045948: positive regulation of translational initiation	2.86E-04
17	GO:0009727: detection of ethylene stimulus	2.86E-04
18	GO:0010033: response to organic substance	2.86E-04
19	GO:0006641: triglyceride metabolic process	2.86E-04
20	GO:0002237: response to molecule of bacterial origin	3.07E-04
21	GO:0042344: indole glucosinolate catabolic process	4.72E-04
22	GO:0006954: inflammatory response	4.72E-04
23	GO:0019563: glycerol catabolic process	4.72E-04
24	GO:1900140: regulation of seedling development	4.72E-04
25	GO:0042256: mature ribosome assembly	4.72E-04
26	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.72E-04
27	GO:0009737: response to abscisic acid	5.09E-04
28	GO:0006072: glycerol-3-phosphate metabolic process	6.76E-04
29	GO:0015749: monosaccharide transport	6.76E-04
30	GO:0009399: nitrogen fixation	6.76E-04
31	GO:0009963: positive regulation of flavonoid biosynthetic process	6.76E-04
32	GO:0006882: cellular zinc ion homeostasis	6.76E-04
33	GO:0006020: inositol metabolic process	6.76E-04
34	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	6.76E-04
35	GO:2001289: lipid X metabolic process	6.76E-04
36	GO:0070301: cellular response to hydrogen peroxide	6.76E-04
37	GO:0010188: response to microbial phytotoxin	8.97E-04
38	GO:1902347: response to strigolactone	8.97E-04
39	GO:0006878: cellular copper ion homeostasis	8.97E-04
40	GO:0006542: glutamine biosynthetic process	8.97E-04
41	GO:0015743: malate transport	8.97E-04
42	GO:0006536: glutamate metabolic process	8.97E-04
43	GO:0043097: pyrimidine nucleoside salvage	1.13E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	1.39E-03
45	GO:0007035: vacuolar acidification	1.39E-03
46	GO:0050665: hydrogen peroxide biosynthetic process	1.39E-03
47	GO:0015691: cadmium ion transport	1.39E-03
48	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.39E-03
49	GO:0010358: leaf shaping	1.39E-03
50	GO:0031930: mitochondria-nucleus signaling pathway	1.66E-03
51	GO:0006694: steroid biosynthetic process	1.66E-03
52	GO:0046470: phosphatidylcholine metabolic process	1.95E-03
53	GO:0006811: ion transport	2.07E-03
54	GO:0010119: regulation of stomatal movement	2.17E-03
55	GO:0009690: cytokinin metabolic process	2.26E-03
56	GO:0009415: response to water	2.26E-03
57	GO:0009061: anaerobic respiration	2.26E-03
58	GO:0006367: transcription initiation from RNA polymerase II promoter	2.58E-03
59	GO:0046916: cellular transition metal ion homeostasis	2.91E-03
60	GO:0042542: response to hydrogen peroxide	2.94E-03
61	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.26E-03
62	GO:0009970: cellular response to sulfate starvation	3.62E-03
63	GO:0006995: cellular response to nitrogen starvation	3.62E-03
64	GO:0000165: MAPK cascade	3.69E-03
65	GO:0043085: positive regulation of catalytic activity	4.00E-03
66	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.39E-03
67	GO:2000012: regulation of auxin polar transport	4.79E-03
68	GO:0010102: lateral root morphogenesis	4.79E-03
69	GO:0048367: shoot system development	5.00E-03
70	GO:0006541: glutamine metabolic process	5.20E-03
71	GO:0005985: sucrose metabolic process	5.63E-03
72	GO:0006863: purine nucleobase transport	6.06E-03
73	GO:0045333: cellular respiration	6.51E-03
74	GO:0042742: defense response to bacterium	7.25E-03
75	GO:0009269: response to desiccation	7.45E-03
76	GO:0009873: ethylene-activated signaling pathway	7.74E-03
77	GO:0031348: negative regulation of defense response	7.93E-03
78	GO:0001944: vasculature development	8.43E-03
79	GO:0009625: response to insect	8.43E-03
80	GO:0009790: embryo development	8.52E-03
81	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.45E-03
82	GO:0042391: regulation of membrane potential	9.99E-03
83	GO:0015991: ATP hydrolysis coupled proton transport	9.99E-03
84	GO:0010150: leaf senescence	1.01E-02
85	GO:0010154: fruit development	1.05E-02
86	GO:0010182: sugar mediated signaling pathway	1.05E-02
87	GO:0046323: glucose import	1.05E-02
88	GO:0009738: abscisic acid-activated signaling pathway	1.11E-02
89	GO:0048544: recognition of pollen	1.11E-02
90	GO:0015986: ATP synthesis coupled proton transport	1.11E-02
91	GO:0042752: regulation of circadian rhythm	1.11E-02
92	GO:0009409: response to cold	1.15E-02
93	GO:0010183: pollen tube guidance	1.16E-02
94	GO:0010468: regulation of gene expression	1.20E-02
95	GO:0006891: intra-Golgi vesicle-mediated transport	1.22E-02
96	GO:0006635: fatty acid beta-oxidation	1.22E-02
97	GO:0035556: intracellular signal transduction	1.24E-02
98	GO:0071281: cellular response to iron ion	1.34E-02
99	GO:0010252: auxin homeostasis	1.40E-02
100	GO:0006904: vesicle docking involved in exocytosis	1.46E-02
101	GO:0010286: heat acclimation	1.46E-02
102	GO:0016126: sterol biosynthetic process	1.58E-02
103	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.65E-02
104	GO:0009627: systemic acquired resistance	1.71E-02
105	GO:0042128: nitrate assimilation	1.71E-02
106	GO:0048573: photoperiodism, flowering	1.78E-02
107	GO:0006950: response to stress	1.78E-02
108	GO:0016049: cell growth	1.85E-02
109	GO:0009817: defense response to fungus, incompatible interaction	1.91E-02
110	GO:0048481: plant ovule development	1.91E-02
111	GO:0080167: response to karrikin	1.94E-02
112	GO:0009631: cold acclimation	2.12E-02
113	GO:0016051: carbohydrate biosynthetic process	2.26E-02
114	GO:0006099: tricarboxylic acid cycle	2.34E-02
115	GO:0006886: intracellular protein transport	2.40E-02
116	GO:0030001: metal ion transport	2.48E-02
117	GO:0006887: exocytosis	2.56E-02
118	GO:0006631: fatty acid metabolic process	2.56E-02
119	GO:0009640: photomorphogenesis	2.71E-02
120	GO:0051707: response to other organism	2.71E-02
121	GO:0048364: root development	2.99E-02
122	GO:0006855: drug transmembrane transport	3.03E-02
123	GO:0009809: lignin biosynthetic process	3.35E-02
124	GO:0006096: glycolytic process	3.78E-02
125	GO:0009626: plant-type hypersensitive response	3.95E-02
126	GO:0009651: response to salt stress	4.38E-02
127	GO:0018105: peptidyl-serine phosphorylation	4.40E-02
128	GO:0006396: RNA processing	4.40E-02
129	GO:0000398: mRNA splicing, via spliceosome	4.77E-02
130	GO:0046686: response to cadmium ion	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
2	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
3	GO:0004370: glycerol kinase activity	0.00E+00
4	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
5	GO:1990446: U1 snRNP binding	0.00E+00
6	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
7	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
8	GO:0019211: phosphatase activator activity	0.00E+00
9	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.23E-04
10	GO:0003867: 4-aminobutyrate transaminase activity	1.23E-04
11	GO:0009679: hexose:proton symporter activity	1.23E-04
12	GO:0000170: sphingosine hydroxylase activity	1.23E-04
13	GO:0046870: cadmium ion binding	1.23E-04
14	GO:0042284: sphingolipid delta-4 desaturase activity	2.86E-04
15	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	2.86E-04
16	GO:0019200: carbohydrate kinase activity	2.86E-04
17	GO:0032791: lead ion binding	2.86E-04
18	GO:0038199: ethylene receptor activity	2.86E-04
19	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	4.72E-04
20	GO:0004096: catalase activity	4.72E-04
21	GO:0004707: MAP kinase activity	5.17E-04
22	GO:0015086: cadmium ion transmembrane transporter activity	6.76E-04
23	GO:0004108: citrate (Si)-synthase activity	6.76E-04
24	GO:0051740: ethylene binding	6.76E-04
25	GO:0005253: anion channel activity	8.97E-04
26	GO:0004576: oligosaccharyl transferase activity	8.97E-04
27	GO:0009916: alternative oxidase activity	8.97E-04
28	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.13E-03
29	GO:0004356: glutamate-ammonia ligase activity	1.13E-03
30	GO:0015145: monosaccharide transmembrane transporter activity	1.13E-03
31	GO:0031369: translation initiation factor binding	1.39E-03
32	GO:0051117: ATPase binding	1.39E-03
33	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.66E-03
34	GO:0004012: phospholipid-translocating ATPase activity	1.66E-03
35	GO:0004849: uridine kinase activity	1.66E-03
36	GO:0003730: mRNA 3'-UTR binding	1.66E-03
37	GO:0015140: malate transmembrane transporter activity	1.95E-03
38	GO:0004620: phospholipase activity	1.95E-03
39	GO:0050897: cobalt ion binding	2.17E-03
40	GO:0004525: ribonuclease III activity	2.26E-03
41	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.58E-03
42	GO:0004630: phospholipase D activity	2.58E-03
43	GO:0030955: potassium ion binding	3.26E-03
44	GO:0004743: pyruvate kinase activity	3.26E-03
45	GO:0004673: protein histidine kinase activity	3.62E-03
46	GO:0015020: glucuronosyltransferase activity	3.62E-03
47	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.00E-03
48	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.79E-03
49	GO:0000155: phosphorelay sensor kinase activity	4.79E-03
50	GO:0030552: cAMP binding	5.63E-03
51	GO:0030553: cGMP binding	5.63E-03
52	GO:0005216: ion channel activity	6.98E-03
53	GO:0043424: protein histidine kinase binding	6.98E-03
54	GO:0005345: purine nucleobase transmembrane transporter activity	6.98E-03
55	GO:0003727: single-stranded RNA binding	8.93E-03
56	GO:0005249: voltage-gated potassium channel activity	9.99E-03
57	GO:0030551: cyclic nucleotide binding	9.99E-03
58	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.28E-02
59	GO:0003729: mRNA binding	1.32E-02
60	GO:0000156: phosphorelay response regulator activity	1.34E-02
61	GO:0005524: ATP binding	1.37E-02
62	GO:0046982: protein heterodimerization activity	1.54E-02
63	GO:0000287: magnesium ion binding	1.54E-02
64	GO:0008375: acetylglucosaminyltransferase activity	1.71E-02
65	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.71E-02
66	GO:0004683: calmodulin-dependent protein kinase activity	1.78E-02
67	GO:0005516: calmodulin binding	1.95E-02
68	GO:0005096: GTPase activator activity	1.98E-02
69	GO:0003697: single-stranded DNA binding	2.26E-02
70	GO:0005509: calcium ion binding	2.55E-02
71	GO:0004722: protein serine/threonine phosphatase activity	2.55E-02
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.35E-02
73	GO:0016301: kinase activity	4.19E-02
74	GO:0016887: ATPase activity	4.43E-02
75	GO:0008026: ATP-dependent helicase activity	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0005886: plasma membrane	5.66E-05
4	GO:0016021: integral component of membrane	1.21E-04
5	GO:0012510: trans-Golgi network transport vesicle membrane	1.23E-04
6	GO:0005783: endoplasmic reticulum	7.86E-04
7	GO:0016471: vacuolar proton-transporting V-type ATPase complex	8.97E-04
8	GO:0005789: endoplasmic reticulum membrane	9.71E-04
9	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.13E-03
10	GO:0016363: nuclear matrix	1.66E-03
11	GO:0000786: nucleosome	2.28E-03
12	GO:0005777: peroxisome	3.06E-03
13	GO:0009506: plasmodesma	4.04E-03
14	GO:0005665: DNA-directed RNA polymerase II, core complex	4.39E-03
15	GO:0010008: endosome membrane	5.00E-03
16	GO:0005795: Golgi stack	5.63E-03
17	GO:0070469: respiratory chain	6.98E-03
18	GO:0030136: clathrin-coated vesicle	9.45E-03
19	GO:0005634: nucleus	1.00E-02
20	GO:0031965: nuclear membrane	1.16E-02
21	GO:0000145: exocyst	1.28E-02
22	GO:0000932: P-body	1.58E-02
23	GO:0005794: Golgi apparatus	2.09E-02
24	GO:0005802: trans-Golgi network	2.11E-02
25	GO:0000325: plant-type vacuole	2.12E-02
26	GO:0005622: intracellular	2.40E-02
27	GO:0005768: endosome	2.47E-02
28	GO:0031902: late endosome membrane	2.56E-02
29	GO:0031966: mitochondrial membrane	3.19E-02
30	GO:0005887: integral component of plasma membrane	3.88E-02
31	GO:0005774: vacuolar membrane	4.58E-02
32	GO:0022626: cytosolic ribosome	4.84E-02