co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046677: response to antibiotic	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:0071474: cellular hyperosmotic response	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
9	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
10	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
11	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
12	GO:0015979: photosynthesis	7.82E-15
13	GO:0009768: photosynthesis, light harvesting in photosystem I	5.17E-13
14	GO:0015995: chlorophyll biosynthetic process	6.55E-09
15	GO:0018298: protein-chromophore linkage	9.20E-09
16	GO:0010114: response to red light	4.59E-08
17	GO:0009769: photosynthesis, light harvesting in photosystem II	8.82E-07
18	GO:0009645: response to low light intensity stimulus	8.82E-07
19	GO:0009644: response to high light intensity	4.24E-05
20	GO:0071470: cellular response to osmotic stress	6.00E-05
21	GO:0006824: cobalt ion transport	1.48E-04
22	GO:0015812: gamma-aminobutyric acid transport	1.48E-04
23	GO:0009416: response to light stimulus	1.54E-04
24	GO:0010218: response to far red light	2.73E-04
25	GO:0009637: response to blue light	3.29E-04
26	GO:0034755: iron ion transmembrane transport	3.38E-04
27	GO:0071497: cellular response to freezing	3.38E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.38E-04
29	GO:0051262: protein tetramerization	3.38E-04
30	GO:0009915: phloem sucrose loading	3.38E-04
31	GO:0035436: triose phosphate transmembrane transport	5.54E-04
32	GO:1902448: positive regulation of shade avoidance	5.54E-04
33	GO:0009269: response to desiccation	6.55E-04
34	GO:0010017: red or far-red light signaling pathway	7.15E-04
35	GO:0030100: regulation of endocytosis	7.93E-04
36	GO:1901000: regulation of response to salt stress	7.93E-04
37	GO:0044211: CTP salvage	7.93E-04
38	GO:0010600: regulation of auxin biosynthetic process	1.05E-03
39	GO:0030104: water homeostasis	1.05E-03
40	GO:0015713: phosphoglycerate transport	1.05E-03
41	GO:0044206: UMP salvage	1.05E-03
42	GO:0042938: dipeptide transport	1.05E-03
43	GO:1901141: regulation of lignin biosynthetic process	1.05E-03
44	GO:0009765: photosynthesis, light harvesting	1.05E-03
45	GO:2000306: positive regulation of photomorphogenesis	1.05E-03
46	GO:0055114: oxidation-reduction process	1.14E-03
47	GO:0043097: pyrimidine nucleoside salvage	1.33E-03
48	GO:0006461: protein complex assembly	1.33E-03
49	GO:0016123: xanthophyll biosynthetic process	1.33E-03
50	GO:0045962: positive regulation of development, heterochronic	1.63E-03
51	GO:0006655: phosphatidylglycerol biosynthetic process	1.63E-03
52	GO:0006206: pyrimidine nucleobase metabolic process	1.63E-03
53	GO:0009643: photosynthetic acclimation	1.63E-03
54	GO:0009635: response to herbicide	1.63E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.63E-03
56	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.96E-03
57	GO:0010189: vitamin E biosynthetic process	1.96E-03
58	GO:0007623: circadian rhythm	2.05E-03
59	GO:0010196: nonphotochemical quenching	2.30E-03
60	GO:0010161: red light signaling pathway	2.30E-03
61	GO:0080186: developmental vegetative growth	2.30E-03
62	GO:0009642: response to light intensity	2.66E-03
63	GO:0009704: de-etiolation	2.66E-03
64	GO:0050821: protein stabilization	2.66E-03
65	GO:0010928: regulation of auxin mediated signaling pathway	2.66E-03
66	GO:0010119: regulation of stomatal movement	2.77E-03
67	GO:0007186: G-protein coupled receptor signaling pathway	3.04E-03
68	GO:0009657: plastid organization	3.04E-03
69	GO:0010099: regulation of photomorphogenesis	3.04E-03
70	GO:0034599: cellular response to oxidative stress	3.17E-03
71	GO:0048507: meristem development	3.44E-03
72	GO:0010206: photosystem II repair	3.44E-03
73	GO:0090333: regulation of stomatal closure	3.44E-03
74	GO:1900865: chloroplast RNA modification	3.86E-03
75	GO:0042761: very long-chain fatty acid biosynthetic process	3.86E-03
76	GO:0008356: asymmetric cell division	3.86E-03
77	GO:0009640: photomorphogenesis	3.90E-03
78	GO:0009723: response to ethylene	4.28E-03
79	GO:0009688: abscisic acid biosynthetic process	4.29E-03
80	GO:0009641: shade avoidance	4.29E-03
81	GO:0006949: syncytium formation	4.29E-03
82	GO:0080167: response to karrikin	4.68E-03
83	GO:0015770: sucrose transport	4.73E-03
84	GO:0043085: positive regulation of catalytic activity	4.73E-03
85	GO:0046856: phosphatidylinositol dephosphorylation	4.73E-03
86	GO:0009698: phenylpropanoid metabolic process	4.73E-03
87	GO:0016024: CDP-diacylglycerol biosynthetic process	5.20E-03
88	GO:0015706: nitrate transport	5.20E-03
89	GO:0018107: peptidyl-threonine phosphorylation	5.68E-03
90	GO:0009718: anthocyanin-containing compound biosynthetic process	5.68E-03
91	GO:0009767: photosynthetic electron transport chain	5.68E-03
92	GO:0045454: cell redox homeostasis	5.88E-03
93	GO:0009887: animal organ morphogenesis	6.17E-03
94	GO:0009266: response to temperature stimulus	6.17E-03
95	GO:0005985: sucrose metabolic process	6.67E-03
96	GO:0090351: seedling development	6.67E-03
97	GO:0034976: response to endoplasmic reticulum stress	7.20E-03
98	GO:0006636: unsaturated fatty acid biosynthetic process	7.20E-03
99	GO:0006289: nucleotide-excision repair	7.74E-03
100	GO:0006874: cellular calcium ion homeostasis	8.29E-03
101	GO:0003333: amino acid transmembrane transport	8.85E-03
102	GO:0048511: rhythmic process	8.85E-03
103	GO:0071215: cellular response to abscisic acid stimulus	1.00E-02
104	GO:0009686: gibberellin biosynthetic process	1.00E-02
105	GO:0045492: xylan biosynthetic process	1.06E-02
106	GO:0010305: leaf vascular tissue pattern formation	1.25E-02
107	GO:0006662: glycerol ether metabolic process	1.25E-02
108	GO:0010182: sugar mediated signaling pathway	1.25E-02
109	GO:0007018: microtubule-based movement	1.32E-02
110	GO:0006814: sodium ion transport	1.32E-02
111	GO:0010228: vegetative to reproductive phase transition of meristem	1.35E-02
112	GO:0008654: phospholipid biosynthetic process	1.39E-02
113	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.45E-02
114	GO:0010193: response to ozone	1.45E-02
115	GO:0000302: response to reactive oxygen species	1.45E-02
116	GO:1901657: glycosyl compound metabolic process	1.59E-02
117	GO:0009828: plant-type cell wall loosening	1.67E-02
118	GO:0006508: proteolysis	1.93E-02
119	GO:0005975: carbohydrate metabolic process	1.98E-02
120	GO:0009658: chloroplast organization	2.01E-02
121	GO:0048573: photoperiodism, flowering	2.12E-02
122	GO:0006970: response to osmotic stress	2.16E-02
123	GO:0016311: dephosphorylation	2.20E-02
124	GO:0000160: phosphorelay signal transduction system	2.36E-02
125	GO:0006811: ion transport	2.45E-02
126	GO:0009631: cold acclimation	2.53E-02
127	GO:0007568: aging	2.53E-02
128	GO:0009910: negative regulation of flower development	2.53E-02
129	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-02
130	GO:0006865: amino acid transport	2.61E-02
131	GO:0044550: secondary metabolite biosynthetic process	2.71E-02
132	GO:0042542: response to hydrogen peroxide	3.14E-02
133	GO:0051707: response to other organism	3.23E-02
134	GO:0009965: leaf morphogenesis	3.51E-02
135	GO:0032259: methylation	3.52E-02
136	GO:0006629: lipid metabolic process	3.67E-02
137	GO:0006812: cation transport	3.80E-02
138	GO:0009664: plant-type cell wall organization	3.80E-02
139	GO:0048364: root development	3.83E-02
140	GO:0009585: red, far-red light phototransduction	4.00E-02
141	GO:0010224: response to UV-B	4.10E-02
142	GO:0006857: oligopeptide transport	4.20E-02
143	GO:0006417: regulation of translation	4.30E-02
144	GO:0009909: regulation of flower development	4.30E-02
145	GO:0043086: negative regulation of catalytic activity	4.50E-02
146	GO:0009740: gibberellic acid mediated signaling pathway	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
8	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
9	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
10	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
11	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
12	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
13	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
14	GO:0031409: pigment binding	3.17E-11
15	GO:0016168: chlorophyll binding	4.57E-09
16	GO:0004462: lactoylglutathione lyase activity	4.28E-05
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.48E-04
18	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.48E-04
19	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.48E-04
20	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.48E-04
21	GO:0005227: calcium activated cation channel activity	1.48E-04
22	GO:0080079: cellobiose glucosidase activity	1.48E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.38E-04
24	GO:0016630: protochlorophyllide reductase activity	3.38E-04
25	GO:0019172: glyoxalase III activity	3.38E-04
26	GO:0008728: GTP diphosphokinase activity	3.38E-04
27	GO:0015180: L-alanine transmembrane transporter activity	3.38E-04
28	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.38E-04
29	GO:0016868: intramolecular transferase activity, phosphotransferases	3.38E-04
30	GO:0016805: dipeptidase activity	5.54E-04
31	GO:0071917: triose-phosphate transmembrane transporter activity	5.54E-04
32	GO:0004180: carboxypeptidase activity	5.54E-04
33	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.54E-04
34	GO:0015181: arginine transmembrane transporter activity	7.93E-04
35	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.93E-04
36	GO:0016851: magnesium chelatase activity	7.93E-04
37	GO:0015189: L-lysine transmembrane transporter activity	7.93E-04
38	GO:0046872: metal ion binding	9.20E-04
39	GO:0005313: L-glutamate transmembrane transporter activity	1.05E-03
40	GO:0070628: proteasome binding	1.05E-03
41	GO:0004930: G-protein coupled receptor activity	1.05E-03
42	GO:0015120: phosphoglycerate transmembrane transporter activity	1.05E-03
43	GO:0004845: uracil phosphoribosyltransferase activity	1.05E-03
44	GO:0042936: dipeptide transporter activity	1.05E-03
45	GO:0051538: 3 iron, 4 sulfur cluster binding	1.33E-03
46	GO:0031593: polyubiquitin binding	1.63E-03
47	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.63E-03
48	GO:0004605: phosphatidate cytidylyltransferase activity	1.63E-03
49	GO:0015297: antiporter activity	1.93E-03
50	GO:0004849: uridine kinase activity	1.96E-03
51	GO:0005261: cation channel activity	1.96E-03
52	GO:0004602: glutathione peroxidase activity	1.96E-03
53	GO:0008506: sucrose:proton symporter activity	2.30E-03
54	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.04E-03
55	GO:0003993: acid phosphatase activity	3.17E-03
56	GO:0071949: FAD binding	3.44E-03
57	GO:0000989: transcription factor activity, transcription factor binding	3.44E-03
58	GO:0005381: iron ion transmembrane transporter activity	3.86E-03
59	GO:0051537: 2 iron, 2 sulfur cluster binding	4.22E-03
60	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.29E-03
61	GO:0008047: enzyme activator activity	4.29E-03
62	GO:0008515: sucrose transmembrane transporter activity	4.73E-03
63	GO:0047372: acylglycerol lipase activity	4.73E-03
64	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.20E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	5.68E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	5.68E-03
67	GO:0015171: amino acid transmembrane transporter activity	5.81E-03
68	GO:0003712: transcription cofactor activity	6.67E-03
69	GO:0005217: intracellular ligand-gated ion channel activity	6.67E-03
70	GO:0004970: ionotropic glutamate receptor activity	6.67E-03
71	GO:0004190: aspartic-type endopeptidase activity	6.67E-03
72	GO:0015035: protein disulfide oxidoreductase activity	7.69E-03
73	GO:0043130: ubiquitin binding	7.74E-03
74	GO:0005216: ion channel activity	8.29E-03
75	GO:0004707: MAP kinase activity	8.85E-03
76	GO:0004176: ATP-dependent peptidase activity	8.85E-03
77	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.61E-03
78	GO:0016787: hydrolase activity	1.04E-02
79	GO:0003756: protein disulfide isomerase activity	1.06E-02
80	GO:0003727: single-stranded RNA binding	1.06E-02
81	GO:0008514: organic anion transmembrane transporter activity	1.06E-02
82	GO:0015144: carbohydrate transmembrane transporter activity	1.12E-02
83	GO:0047134: protein-disulfide reductase activity	1.13E-02
84	GO:0008536: Ran GTPase binding	1.25E-02
85	GO:0005351: sugar:proton symporter activity	1.26E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	1.32E-02
87	GO:0048038: quinone binding	1.45E-02
88	GO:0000156: phosphorelay response regulator activity	1.59E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.59E-02
90	GO:0003684: damaged DNA binding	1.67E-02
91	GO:0008168: methyltransferase activity	1.93E-02
92	GO:0102483: scopolin beta-glucosidase activity	2.12E-02
93	GO:0008233: peptidase activity	2.45E-02
94	GO:0008422: beta-glucosidase activity	2.87E-02
95	GO:0042393: histone binding	2.96E-02
96	GO:0004185: serine-type carboxypeptidase activity	3.23E-02
97	GO:0043621: protein self-association	3.42E-02
98	GO:0005198: structural molecule activity	3.51E-02
99	GO:0015293: symporter activity	3.51E-02
100	GO:0005506: iron ion binding	3.77E-02
101	GO:0004519: endonuclease activity	3.99E-02
102	GO:0016298: lipase activity	4.10E-02
103	GO:0005515: protein binding	4.11E-02
104	GO:0003777: microtubule motor activity	4.30E-02
105	GO:0005215: transporter activity	4.34E-02
106	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.81E-02
107	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.81E-02
108	GO:0016874: ligase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	1.25E-17
3	GO:0009534: chloroplast thylakoid	4.85E-16
4	GO:0009507: chloroplast	8.08E-14
5	GO:0009941: chloroplast envelope	1.86E-13
6	GO:0009522: photosystem I	7.99E-12
7	GO:0010287: plastoglobule	1.98E-11
8	GO:0009579: thylakoid	9.26E-11
9	GO:0030076: light-harvesting complex	2.56E-07
10	GO:0009538: photosystem I reaction center	1.36E-06
11	GO:0009523: photosystem II	2.92E-06
12	GO:0009517: PSII associated light-harvesting complex II	1.75E-05
13	GO:0009570: chloroplast stroma	3.08E-05
14	GO:0016021: integral component of membrane	4.94E-05
15	GO:0016020: membrane	1.29E-04
16	GO:0009783: photosystem II antenna complex	1.48E-04
17	GO:0010007: magnesium chelatase complex	5.54E-04
18	GO:0042651: thylakoid membrane	5.98E-04
19	GO:0031969: chloroplast membrane	8.47E-04
20	GO:0009706: chloroplast inner membrane	1.03E-03
21	GO:0030660: Golgi-associated vesicle membrane	1.05E-03
22	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.05E-03
23	GO:0005798: Golgi-associated vesicle	1.63E-03
24	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.66E-03
25	GO:0005765: lysosomal membrane	4.73E-03
26	GO:0030095: chloroplast photosystem II	6.17E-03
27	GO:0005769: early endosome	7.20E-03
28	GO:0009543: chloroplast thylakoid lumen	9.35E-03
29	GO:0005871: kinesin complex	1.13E-02
30	GO:0009707: chloroplast outer membrane	2.28E-02
31	GO:0031977: thylakoid lumen	3.05E-02
32	GO:0031966: mitochondrial membrane	3.80E-02
33	GO:0016607: nuclear speck	4.61E-02
34	GO:0010008: endosome membrane	4.61E-02
35	GO:0005887: integral component of plasma membrane	4.96E-02