Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0010205: photoinhibition1.32E-05
3GO:0015979: photosynthesis1.83E-05
4GO:0009773: photosynthetic electron transport in photosystem I1.94E-05
5GO:0035304: regulation of protein dephosphorylation6.44E-05
6GO:0009697: salicylic acid biosynthetic process2.95E-04
7GO:0010438: cellular response to sulfur starvation2.95E-04
8GO:0009823: cytokinin catabolic process2.95E-04
9GO:0009913: epidermal cell differentiation3.65E-04
10GO:0010190: cytochrome b6f complex assembly3.65E-04
11GO:0009759: indole glucosinolate biosynthetic process3.65E-04
12GO:0042549: photosystem II stabilization3.65E-04
13GO:0042372: phylloquinone biosynthetic process4.36E-04
14GO:0009772: photosynthetic electron transport in photosystem II5.11E-04
15GO:0009690: cytokinin metabolic process5.89E-04
16GO:0019684: photosynthesis, light reaction1.01E-03
17GO:0008285: negative regulation of cell proliferation1.01E-03
18GO:0002213: defense response to insect1.11E-03
19GO:0010207: photosystem II assembly1.30E-03
20GO:0045490: pectin catabolic process1.30E-03
21GO:0071732: cellular response to nitric oxide1.40E-03
22GO:0010030: positive regulation of seed germination1.40E-03
23GO:0010025: wax biosynthetic process1.50E-03
24GO:0000162: tryptophan biosynthetic process1.50E-03
25GO:0016998: cell wall macromolecule catabolic process1.83E-03
26GO:0030245: cellulose catabolic process1.95E-03
27GO:0071369: cellular response to ethylene stimulus2.06E-03
28GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.30E-03
29GO:0042631: cellular response to water deprivation2.42E-03
30GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.54E-03
31GO:0015986: ATP synthesis coupled proton transport2.68E-03
32GO:0048825: cotyledon development2.80E-03
33GO:0000302: response to reactive oxygen species2.94E-03
34GO:0071281: cellular response to iron ion3.21E-03
35GO:0010411: xyloglucan metabolic process4.21E-03
36GO:0034599: cellular response to oxidative stress5.47E-03
37GO:0042546: cell wall biogenesis6.50E-03
38GO:0009585: red, far-red light phototransduction7.78E-03
39GO:0009624: response to nematode9.95E-03
40GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
41GO:0009058: biosynthetic process1.21E-02
42GO:0009845: seed germination1.23E-02
43GO:0042744: hydrogen peroxide catabolic process1.28E-02
44GO:0071555: cell wall organization1.29E-02
45GO:0040008: regulation of growth1.42E-02
46GO:0009409: response to cold1.75E-02
47GO:0048366: leaf development2.24E-02
48GO:0016192: vesicle-mediated transport2.41E-02
49GO:0045454: cell redox homeostasis2.64E-02
50GO:0009737: response to abscisic acid2.76E-02
51GO:0006869: lipid transport2.82E-02
52GO:0006629: lipid metabolic process3.07E-02
53GO:0048364: root development3.16E-02
54GO:0016310: phosphorylation3.18E-02
55GO:0009753: response to jasmonic acid3.23E-02
56GO:0006357: regulation of transcription from RNA polymerase II promoter3.75E-02
57GO:0009735: response to cytokinin4.33E-02
RankGO TermAdjusted P value
1GO:0008909: isochorismate synthase activity2.53E-05
2GO:0010242: oxygen evolving activity2.53E-05
3GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity2.53E-05
4GO:0030570: pectate lyase activity7.16E-05
5GO:0019139: cytokinin dehydrogenase activity2.95E-04
6GO:0004130: cytochrome-c peroxidase activity3.65E-04
7GO:0047372: acylglycerol lipase activity1.01E-03
8GO:0016829: lyase activity1.04E-03
9GO:0008131: primary amine oxidase activity1.30E-03
10GO:0008266: poly(U) RNA binding1.30E-03
11GO:0004176: ATP-dependent peptidase activity1.83E-03
12GO:0008810: cellulase activity2.06E-03
13GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.55E-03
14GO:0016762: xyloglucan:xyloglucosyl transferase activity2.94E-03
15GO:0016168: chlorophyll binding3.91E-03
16GO:0016798: hydrolase activity, acting on glycosyl bonds4.21E-03
17GO:0030145: manganese ion binding4.99E-03
18GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.99E-03
19GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.73E-02
20GO:0004601: peroxidase activity1.99E-02
21GO:0050660: flavin adenine dinucleotide binding2.21E-02
22GO:0008233: peptidase activity2.30E-02
23GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.64E-02
24GO:0016787: hydrolase activity2.78E-02
25GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.85E-02
26GO:0008289: lipid binding3.88E-02
RankGO TermAdjusted P value
1GO:0009535: chloroplast thylakoid membrane6.26E-08
2GO:0009534: chloroplast thylakoid3.57E-07
3GO:0009579: thylakoid8.23E-06
4GO:0030095: chloroplast photosystem II3.12E-05
5GO:0030093: chloroplast photosystem I6.44E-05
6GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.65E-04
7GO:0031977: thylakoid lumen3.84E-04
8GO:0009533: chloroplast stromal thylakoid5.11E-04
9GO:0009538: photosystem I reaction center5.89E-04
10GO:0010287: plastoglobule9.13E-04
11GO:0009543: chloroplast thylakoid lumen9.61E-04
12GO:0009508: plastid chromosome1.20E-03
13GO:0009654: photosystem II oxygen evolving complex1.72E-03
14GO:0009507: chloroplast1.84E-03
15GO:0009522: photosystem I2.68E-03
16GO:0009523: photosystem II2.80E-03
17GO:0019898: extrinsic component of membrane2.80E-03
18GO:0010319: stromule3.48E-03
19GO:0009295: nucleoid3.48E-03
20GO:0010008: endosome membrane8.93E-03
21GO:0005615: extracellular space1.58E-02
22GO:0016021: integral component of membrane2.95E-02
Gene type



Gene DE type