GO Enrichment Analysis of Co-expressed Genes with
AT3G61080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0010027: thylakoid membrane organization | 1.47E-08 |
| 4 | GO:0009773: photosynthetic electron transport in photosystem I | 1.95E-07 |
| 5 | GO:0015979: photosynthesis | 5.87E-06 |
| 6 | GO:0090391: granum assembly | 6.94E-06 |
| 7 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.73E-05 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 2.56E-05 |
| 9 | GO:0006655: phosphatidylglycerol biosynthetic process | 6.98E-05 |
| 10 | GO:0010196: nonphotochemical quenching | 1.29E-04 |
| 11 | GO:0080051: cutin transport | 2.00E-04 |
| 12 | GO:0043686: co-translational protein modification | 2.00E-04 |
| 13 | GO:0034337: RNA folding | 2.00E-04 |
| 14 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.00E-04 |
| 15 | GO:0010205: photoinhibition | 2.97E-04 |
| 16 | GO:0009735: response to cytokinin | 3.26E-04 |
| 17 | GO:0015908: fatty acid transport | 4.48E-04 |
| 18 | GO:0035304: regulation of protein dephosphorylation | 4.48E-04 |
| 19 | GO:0043255: regulation of carbohydrate biosynthetic process | 4.48E-04 |
| 20 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.48E-04 |
| 21 | GO:0001736: establishment of planar polarity | 4.48E-04 |
| 22 | GO:0010024: phytochromobilin biosynthetic process | 4.48E-04 |
| 23 | GO:0010207: photosystem II assembly | 5.92E-04 |
| 24 | GO:0006788: heme oxidation | 7.29E-04 |
| 25 | GO:0016050: vesicle organization | 7.29E-04 |
| 26 | GO:1901332: negative regulation of lateral root development | 1.04E-03 |
| 27 | GO:0009152: purine ribonucleotide biosynthetic process | 1.04E-03 |
| 28 | GO:0046653: tetrahydrofolate metabolic process | 1.04E-03 |
| 29 | GO:0015994: chlorophyll metabolic process | 1.38E-03 |
| 30 | GO:0010021: amylopectin biosynthetic process | 1.38E-03 |
| 31 | GO:0010222: stem vascular tissue pattern formation | 1.38E-03 |
| 32 | GO:0045727: positive regulation of translation | 1.38E-03 |
| 33 | GO:0080110: sporopollenin biosynthetic process | 1.76E-03 |
| 34 | GO:0006564: L-serine biosynthetic process | 1.76E-03 |
| 35 | GO:0031365: N-terminal protein amino acid modification | 1.76E-03 |
| 36 | GO:0000302: response to reactive oxygen species | 1.95E-03 |
| 37 | GO:0010337: regulation of salicylic acid metabolic process | 2.17E-03 |
| 38 | GO:0006561: proline biosynthetic process | 2.17E-03 |
| 39 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.17E-03 |
| 40 | GO:0042549: photosystem II stabilization | 2.17E-03 |
| 41 | GO:1901259: chloroplast rRNA processing | 2.60E-03 |
| 42 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.60E-03 |
| 43 | GO:0010019: chloroplast-nucleus signaling pathway | 2.60E-03 |
| 44 | GO:0042744: hydrogen peroxide catabolic process | 2.74E-03 |
| 45 | GO:1900057: positive regulation of leaf senescence | 3.06E-03 |
| 46 | GO:0006400: tRNA modification | 3.06E-03 |
| 47 | GO:0009395: phospholipid catabolic process | 3.06E-03 |
| 48 | GO:0009772: photosynthetic electron transport in photosystem II | 3.06E-03 |
| 49 | GO:0008152: metabolic process | 3.36E-03 |
| 50 | GO:0006605: protein targeting | 3.55E-03 |
| 51 | GO:0010492: maintenance of shoot apical meristem identity | 3.55E-03 |
| 52 | GO:0048564: photosystem I assembly | 3.55E-03 |
| 53 | GO:0010311: lateral root formation | 3.83E-03 |
| 54 | GO:0032544: plastid translation | 4.06E-03 |
| 55 | GO:0015996: chlorophyll catabolic process | 4.06E-03 |
| 56 | GO:0048507: meristem development | 4.60E-03 |
| 57 | GO:0010206: photosystem II repair | 4.60E-03 |
| 58 | GO:0034765: regulation of ion transmembrane transport | 4.60E-03 |
| 59 | GO:0000373: Group II intron splicing | 4.60E-03 |
| 60 | GO:0034599: cellular response to oxidative stress | 4.82E-03 |
| 61 | GO:0006032: chitin catabolic process | 5.74E-03 |
| 62 | GO:0009688: abscisic acid biosynthetic process | 5.74E-03 |
| 63 | GO:0048829: root cap development | 5.74E-03 |
| 64 | GO:0019684: photosynthesis, light reaction | 6.34E-03 |
| 65 | GO:0009750: response to fructose | 6.34E-03 |
| 66 | GO:0048765: root hair cell differentiation | 6.34E-03 |
| 67 | GO:0005983: starch catabolic process | 6.96E-03 |
| 68 | GO:0010588: cotyledon vascular tissue pattern formation | 7.61E-03 |
| 69 | GO:0010628: positive regulation of gene expression | 7.61E-03 |
| 70 | GO:0006364: rRNA processing | 8.01E-03 |
| 71 | GO:0010143: cutin biosynthetic process | 8.28E-03 |
| 72 | GO:0009825: multidimensional cell growth | 8.97E-03 |
| 73 | GO:0010167: response to nitrate | 8.97E-03 |
| 74 | GO:0071732: cellular response to nitric oxide | 8.97E-03 |
| 75 | GO:0090351: seedling development | 8.97E-03 |
| 76 | GO:0010053: root epidermal cell differentiation | 8.97E-03 |
| 77 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.68E-03 |
| 78 | GO:0006833: water transport | 9.68E-03 |
| 79 | GO:0007017: microtubule-based process | 1.12E-02 |
| 80 | GO:0009695: jasmonic acid biosynthetic process | 1.12E-02 |
| 81 | GO:0019953: sexual reproduction | 1.12E-02 |
| 82 | GO:0009624: response to nematode | 1.14E-02 |
| 83 | GO:0031408: oxylipin biosynthetic process | 1.19E-02 |
| 84 | GO:0003333: amino acid transmembrane transport | 1.19E-02 |
| 85 | GO:0016998: cell wall macromolecule catabolic process | 1.19E-02 |
| 86 | GO:0009269: response to desiccation | 1.19E-02 |
| 87 | GO:0032259: methylation | 1.25E-02 |
| 88 | GO:0016042: lipid catabolic process | 1.27E-02 |
| 89 | GO:0035428: hexose transmembrane transport | 1.27E-02 |
| 90 | GO:0071369: cellular response to ethylene stimulus | 1.35E-02 |
| 91 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.35E-02 |
| 92 | GO:0009561: megagametogenesis | 1.43E-02 |
| 93 | GO:0009306: protein secretion | 1.43E-02 |
| 94 | GO:0010584: pollen exine formation | 1.43E-02 |
| 95 | GO:0042335: cuticle development | 1.60E-02 |
| 96 | GO:0042391: regulation of membrane potential | 1.60E-02 |
| 97 | GO:0080022: primary root development | 1.60E-02 |
| 98 | GO:0034220: ion transmembrane transport | 1.60E-02 |
| 99 | GO:0009958: positive gravitropism | 1.69E-02 |
| 100 | GO:0010182: sugar mediated signaling pathway | 1.69E-02 |
| 101 | GO:0046323: glucose import | 1.69E-02 |
| 102 | GO:0048544: recognition of pollen | 1.78E-02 |
| 103 | GO:0015986: ATP synthesis coupled proton transport | 1.78E-02 |
| 104 | GO:0019252: starch biosynthetic process | 1.87E-02 |
| 105 | GO:0009734: auxin-activated signaling pathway | 2.03E-02 |
| 106 | GO:0016032: viral process | 2.06E-02 |
| 107 | GO:0019761: glucosinolate biosynthetic process | 2.06E-02 |
| 108 | GO:0071281: cellular response to iron ion | 2.16E-02 |
| 109 | GO:0055114: oxidation-reduction process | 2.16E-02 |
| 110 | GO:0009828: plant-type cell wall loosening | 2.25E-02 |
| 111 | GO:0071805: potassium ion transmembrane transport | 2.35E-02 |
| 112 | GO:0030244: cellulose biosynthetic process | 3.09E-02 |
| 113 | GO:0009631: cold acclimation | 3.42E-02 |
| 114 | GO:0006865: amino acid transport | 3.54E-02 |
| 115 | GO:0009853: photorespiration | 3.65E-02 |
| 116 | GO:0080167: response to karrikin | 3.80E-02 |
| 117 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.93E-02 |
| 118 | GO:0009926: auxin polar transport | 4.37E-02 |
| 119 | GO:0006855: drug transmembrane transport | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0016851: magnesium chelatase activity | 1.60E-05 |
| 5 | GO:0005528: FK506 binding | 4.54E-05 |
| 6 | GO:0004130: cytochrome-c peroxidase activity | 6.98E-05 |
| 7 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 6.98E-05 |
| 8 | GO:0050308: sugar-phosphatase activity | 2.00E-04 |
| 9 | GO:0010242: oxygen evolving activity | 2.00E-04 |
| 10 | GO:0042586: peptide deformylase activity | 2.00E-04 |
| 11 | GO:0045485: omega-6 fatty acid desaturase activity | 2.00E-04 |
| 12 | GO:0004321: fatty-acyl-CoA synthase activity | 2.00E-04 |
| 13 | GO:0019203: carbohydrate phosphatase activity | 2.00E-04 |
| 14 | GO:0034256: chlorophyll(ide) b reductase activity | 2.00E-04 |
| 15 | GO:0015245: fatty acid transporter activity | 2.00E-04 |
| 16 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.00E-04 |
| 17 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.00E-04 |
| 18 | GO:0019843: rRNA binding | 3.64E-04 |
| 19 | GO:0016630: protochlorophyllide reductase activity | 4.48E-04 |
| 20 | GO:0047746: chlorophyllase activity | 4.48E-04 |
| 21 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.48E-04 |
| 22 | GO:0033201: alpha-1,4-glucan synthase activity | 4.48E-04 |
| 23 | GO:0031072: heat shock protein binding | 5.25E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 5.92E-04 |
| 25 | GO:0004373: glycogen (starch) synthase activity | 7.29E-04 |
| 26 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.29E-04 |
| 27 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.29E-04 |
| 28 | GO:0016491: oxidoreductase activity | 7.95E-04 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.42E-04 |
| 30 | GO:0016788: hydrolase activity, acting on ester bonds | 1.19E-03 |
| 31 | GO:0010328: auxin influx transmembrane transporter activity | 1.38E-03 |
| 32 | GO:0009011: starch synthase activity | 1.38E-03 |
| 33 | GO:0004392: heme oxygenase (decyclizing) activity | 1.38E-03 |
| 34 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.38E-03 |
| 35 | GO:0010011: auxin binding | 1.38E-03 |
| 36 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.38E-03 |
| 37 | GO:0050662: coenzyme binding | 1.70E-03 |
| 38 | GO:0003959: NADPH dehydrogenase activity | 1.76E-03 |
| 39 | GO:0016746: transferase activity, transferring acyl groups | 1.82E-03 |
| 40 | GO:0042578: phosphoric ester hydrolase activity | 2.17E-03 |
| 41 | GO:0016688: L-ascorbate peroxidase activity | 2.17E-03 |
| 42 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.17E-03 |
| 43 | GO:2001070: starch binding | 2.17E-03 |
| 44 | GO:0005242: inward rectifier potassium channel activity | 2.60E-03 |
| 45 | GO:0016597: amino acid binding | 2.65E-03 |
| 46 | GO:0043022: ribosome binding | 3.55E-03 |
| 47 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.60E-03 |
| 48 | GO:0016207: 4-coumarate-CoA ligase activity | 4.60E-03 |
| 49 | GO:0004568: chitinase activity | 5.74E-03 |
| 50 | GO:0004565: beta-galactosidase activity | 7.61E-03 |
| 51 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.61E-03 |
| 52 | GO:0052689: carboxylic ester hydrolase activity | 9.11E-03 |
| 53 | GO:0016874: ligase activity | 1.08E-02 |
| 54 | GO:0030246: carbohydrate binding | 1.09E-02 |
| 55 | GO:0051082: unfolded protein binding | 1.14E-02 |
| 56 | GO:0004176: ATP-dependent peptidase activity | 1.19E-02 |
| 57 | GO:0030570: pectate lyase activity | 1.35E-02 |
| 58 | GO:0003756: protein disulfide isomerase activity | 1.43E-02 |
| 59 | GO:0030551: cyclic nucleotide binding | 1.60E-02 |
| 60 | GO:0005249: voltage-gated potassium channel activity | 1.60E-02 |
| 61 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.69E-02 |
| 62 | GO:0005355: glucose transmembrane transporter activity | 1.78E-02 |
| 63 | GO:0016787: hydrolase activity | 2.16E-02 |
| 64 | GO:0016791: phosphatase activity | 2.25E-02 |
| 65 | GO:0003824: catalytic activity | 2.30E-02 |
| 66 | GO:0005200: structural constituent of cytoskeleton | 2.35E-02 |
| 67 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.52E-02 |
| 68 | GO:0042802: identical protein binding | 2.52E-02 |
| 69 | GO:0015250: water channel activity | 2.55E-02 |
| 70 | GO:0051213: dioxygenase activity | 2.55E-02 |
| 71 | GO:0030247: polysaccharide binding | 2.87E-02 |
| 72 | GO:0008168: methyltransferase activity | 2.95E-02 |
| 73 | GO:0004601: peroxidase activity | 3.07E-02 |
| 74 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.09E-02 |
| 75 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.65E-02 |
| 76 | GO:0003746: translation elongation factor activity | 3.65E-02 |
| 77 | GO:0003993: acid phosphatase activity | 3.77E-02 |
| 78 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.01E-02 |
| 79 | GO:0015293: symporter activity | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.16E-32 |
| 3 | GO:0009534: chloroplast thylakoid | 7.42E-26 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.16E-25 |
| 5 | GO:0009570: chloroplast stroma | 2.48E-17 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.68E-15 |
| 7 | GO:0009579: thylakoid | 2.49E-13 |
| 8 | GO:0031977: thylakoid lumen | 1.89E-12 |
| 9 | GO:0009941: chloroplast envelope | 6.01E-09 |
| 10 | GO:0010007: magnesium chelatase complex | 6.94E-06 |
| 11 | GO:0030095: chloroplast photosystem II | 2.65E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 5.32E-05 |
| 13 | GO:0019898: extrinsic component of membrane | 1.60E-04 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.49E-04 |
| 15 | GO:0010287: plastoglobule | 3.33E-04 |
| 16 | GO:0009897: external side of plasma membrane | 7.29E-04 |
| 17 | GO:0015630: microtubule cytoskeleton | 1.04E-03 |
| 18 | GO:0031969: chloroplast membrane | 1.60E-03 |
| 19 | GO:0009706: chloroplast inner membrane | 1.75E-03 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.17E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 2.80E-03 |
| 22 | GO:0009986: cell surface | 3.06E-03 |
| 23 | GO:0009501: amyloplast | 3.55E-03 |
| 24 | GO:0008180: COP9 signalosome | 4.60E-03 |
| 25 | GO:0032040: small-subunit processome | 6.96E-03 |
| 26 | GO:0009508: plastid chromosome | 7.61E-03 |
| 27 | GO:0000312: plastid small ribosomal subunit | 8.28E-03 |
| 28 | GO:0016020: membrane | 1.60E-02 |
| 29 | GO:0009523: photosystem II | 1.87E-02 |
| 30 | GO:0005618: cell wall | 2.34E-02 |
| 31 | GO:0009295: nucleoid | 2.35E-02 |
| 32 | GO:0010319: stromule | 2.35E-02 |
| 33 | GO:0019005: SCF ubiquitin ligase complex | 3.09E-02 |
| 34 | GO:0016021: integral component of membrane | 4.60E-02 |