co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015015: heparan sulfate proteoglycan biosynthetic process, enzymatic modification	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:0071311: cellular response to acetate	0.00E+00
4	GO:0071260: cellular response to mechanical stimulus	0.00E+00
5	GO:0010203: response to very low fluence red light stimulus	0.00E+00
6	GO:0015812: gamma-aminobutyric acid transport	8.09E-05
7	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	8.09E-05
8	GO:0080173: male-female gamete recognition during double fertilization	8.09E-05
9	GO:0030259: lipid glycosylation	1.93E-04
10	GO:0006611: protein export from nucleus	1.93E-04
11	GO:0071230: cellular response to amino acid stimulus	3.24E-04
12	GO:0017006: protein-tetrapyrrole linkage	3.24E-04
13	GO:0045836: positive regulation of meiotic nuclear division	3.24E-04
14	GO:0000055: ribosomal large subunit export from nucleus	3.24E-04
15	GO:0010366: negative regulation of ethylene biosynthetic process	3.24E-04
16	GO:0055070: copper ion homeostasis	4.66E-04
17	GO:0009584: detection of visible light	4.66E-04
18	GO:0044211: CTP salvage	4.66E-04
19	GO:2000306: positive regulation of photomorphogenesis	6.21E-04
20	GO:0044206: UMP salvage	6.21E-04
21	GO:0007029: endoplasmic reticulum organization	7.86E-04
22	GO:0000380: alternative mRNA splicing, via spliceosome	7.86E-04
23	GO:0045927: positive regulation of growth	7.86E-04
24	GO:0043097: pyrimidine nucleoside salvage	7.86E-04
25	GO:0002238: response to molecule of fungal origin	9.59E-04
26	GO:0045962: positive regulation of development, heterochronic	9.59E-04
27	GO:0006206: pyrimidine nucleobase metabolic process	9.59E-04
28	GO:0018298: protein-chromophore linkage	1.09E-03
29	GO:0017148: negative regulation of translation	1.14E-03
30	GO:0010218: response to far red light	1.19E-03
31	GO:0010161: red light signaling pathway	1.34E-03
32	GO:0045087: innate immune response	1.36E-03
33	GO:0009637: response to blue light	1.36E-03
34	GO:0009061: anaerobic respiration	1.54E-03
35	GO:0019827: stem cell population maintenance	1.54E-03
36	GO:0010099: regulation of photomorphogenesis	1.76E-03
37	GO:0009827: plant-type cell wall modification	1.76E-03
38	GO:0008643: carbohydrate transport	1.88E-03
39	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.98E-03
40	GO:0046685: response to arsenic-containing substance	1.98E-03
41	GO:0048507: meristem development	1.98E-03
42	GO:0009638: phototropism	2.22E-03
43	GO:0030042: actin filament depolymerization	2.22E-03
44	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.22E-03
45	GO:0006535: cysteine biosynthetic process from serine	2.46E-03
46	GO:0009641: shade avoidance	2.46E-03
47	GO:0006816: calcium ion transport	2.71E-03
48	GO:0009718: anthocyanin-containing compound biosynthetic process	3.24E-03
49	GO:0007015: actin filament organization	3.52E-03
50	GO:0019853: L-ascorbic acid biosynthetic process	3.81E-03
51	GO:0034976: response to endoplasmic reticulum stress	4.10E-03
52	GO:0009058: biosynthetic process	4.35E-03
53	GO:0019344: cysteine biosynthetic process	4.40E-03
54	GO:0009768: photosynthesis, light harvesting in photosystem I	4.70E-03
55	GO:0006874: cellular calcium ion homeostasis	4.70E-03
56	GO:0051321: meiotic cell cycle	5.02E-03
57	GO:0003333: amino acid transmembrane transport	5.02E-03
58	GO:0061077: chaperone-mediated protein folding	5.02E-03
59	GO:0019748: secondary metabolic process	5.34E-03
60	GO:0009416: response to light stimulus	5.59E-03
61	GO:0010082: regulation of root meristem growth	5.67E-03
62	GO:0006012: galactose metabolic process	5.67E-03
63	GO:0019722: calcium-mediated signaling	6.01E-03
64	GO:0070417: cellular response to cold	6.35E-03
65	GO:0051028: mRNA transport	6.35E-03
66	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.35E-03
67	GO:0034220: ion transmembrane transport	6.70E-03
68	GO:0006814: sodium ion transport	7.42E-03
69	GO:0009630: gravitropism	8.56E-03
70	GO:1901657: glycosyl compound metabolic process	8.94E-03
71	GO:0009567: double fertilization forming a zygote and endosperm	9.34E-03
72	GO:0010029: regulation of seed germination	1.10E-02
73	GO:0006950: response to stress	1.19E-02
74	GO:0044550: secondary metabolite biosynthetic process	1.19E-02
75	GO:0015995: chlorophyll biosynthetic process	1.19E-02
76	GO:0009817: defense response to fungus, incompatible interaction	1.27E-02
77	GO:0009834: plant-type secondary cell wall biogenesis	1.37E-02
78	GO:0010043: response to zinc ion	1.41E-02
79	GO:0010114: response to red light	1.80E-02
80	GO:0009640: photomorphogenesis	1.80E-02
81	GO:0009965: leaf morphogenesis	1.96E-02
82	GO:0006812: cation transport	2.12E-02
83	GO:0009585: red, far-red light phototransduction	2.23E-02
84	GO:0005975: carbohydrate metabolic process	2.32E-02
85	GO:0006857: oligopeptide transport	2.34E-02
86	GO:0009909: regulation of flower development	2.40E-02
87	GO:0009735: response to cytokinin	2.63E-02
88	GO:0009553: embryo sac development	2.81E-02
89	GO:0009624: response to nematode	2.87E-02
90	GO:0009737: response to abscisic acid	3.54E-02
91	GO:0055085: transmembrane transport	3.64E-02
92	GO:0006457: protein folding	3.71E-02
93	GO:0006413: translational initiation	4.02E-02
94	GO:0009739: response to gibberellin	4.58E-02
95	GO:0008380: RNA splicing	4.80E-02
96	GO:0009617: response to bacterium	4.80E-02
97	GO:0010468: regulation of gene expression	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0015276: ligand-gated ion channel activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0008476: protein-tyrosine sulfotransferase activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0017095: heparan sulfate 6-O-sulfotransferase activity	0.00E+00
12	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	8.09E-05
13	GO:0030275: LRR domain binding	8.09E-05
14	GO:0031516: far-red light photoreceptor activity	8.09E-05
15	GO:0080079: cellobiose glucosidase activity	8.09E-05
16	GO:0008066: glutamate receptor activity	8.09E-05
17	GO:0015180: L-alanine transmembrane transporter activity	1.93E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	1.93E-04
19	GO:0009883: red or far-red light photoreceptor activity	1.93E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.93E-04
21	GO:0008020: G-protein coupled photoreceptor activity	3.24E-04
22	GO:0043023: ribosomal large subunit binding	4.66E-04
23	GO:0015189: L-lysine transmembrane transporter activity	4.66E-04
24	GO:0015181: arginine transmembrane transporter activity	4.66E-04
25	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.11E-04
26	GO:0004845: uracil phosphoribosyltransferase activity	6.21E-04
27	GO:0005313: L-glutamate transmembrane transporter activity	6.21E-04
28	GO:0015562: efflux transmembrane transporter activity	9.59E-04
29	GO:0004849: uridine kinase activity	1.14E-03
30	GO:0004124: cysteine synthase activity	1.14E-03
31	GO:0004033: aldo-keto reductase (NADP) activity	1.54E-03
32	GO:0004497: monooxygenase activity	1.65E-03
33	GO:0000989: transcription factor activity, transcription factor binding	1.98E-03
34	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.98E-03
35	GO:0004673: protein histidine kinase activity	2.46E-03
36	GO:0031625: ubiquitin protein ligase binding	2.58E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	3.24E-03
38	GO:0005315: inorganic phosphate transmembrane transporter activity	3.24E-03
39	GO:0000155: phosphorelay sensor kinase activity	3.24E-03
40	GO:0005262: calcium channel activity	3.24E-03
41	GO:0004565: beta-galactosidase activity	3.24E-03
42	GO:0004970: ionotropic glutamate receptor activity	3.81E-03
43	GO:0005217: intracellular ligand-gated ion channel activity	3.81E-03
44	GO:0031409: pigment binding	4.10E-03
45	GO:0008324: cation transmembrane transporter activity	4.70E-03
46	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.02E-03
47	GO:0004672: protein kinase activity	5.41E-03
48	GO:0015297: antiporter activity	5.43E-03
49	GO:0003729: mRNA binding	5.52E-03
50	GO:0003756: protein disulfide isomerase activity	6.01E-03
51	GO:0008514: organic anion transmembrane transporter activity	6.01E-03
52	GO:0019825: oxygen binding	8.75E-03
53	GO:0016168: chlorophyll binding	1.10E-02
54	GO:0102483: scopolin beta-glucosidase activity	1.19E-02
55	GO:0005506: iron ion binding	1.34E-02
56	GO:0042803: protein homodimerization activity	1.37E-02
57	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.41E-02
58	GO:0008422: beta-glucosidase activity	1.60E-02
59	GO:0004185: serine-type carboxypeptidase activity	1.80E-02
60	GO:0015293: symporter activity	1.96E-02
61	GO:0005198: structural molecule activity	1.96E-02
62	GO:0004842: ubiquitin-protein transferase activity	2.06E-02
63	GO:0015171: amino acid transmembrane transporter activity	2.40E-02
64	GO:0020037: heme binding	2.43E-02
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.57E-02
66	GO:0016874: ligase activity	2.75E-02
67	GO:0022857: transmembrane transporter activity	2.75E-02
68	GO:0003779: actin binding	2.81E-02
69	GO:0016740: transferase activity	3.50E-02
70	GO:0030170: pyridoxal phosphate binding	3.62E-02
71	GO:0015144: carbohydrate transmembrane transporter activity	3.82E-02
72	GO:0005351: sugar:proton symporter activity	4.16E-02
73	GO:0005525: GTP binding	4.70E-02
74	GO:0003743: translation initiation factor activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	7.31E-04
2	GO:0005851: eukaryotic translation initiation factor 2B complex	9.59E-04
3	GO:0000151: ubiquitin ligase complex	1.09E-03
4	GO:0016604: nuclear body	2.22E-03
5	GO:0016607: nuclear speck	2.84E-03
6	GO:0015629: actin cytoskeleton	5.67E-03
7	GO:0009522: photosystem I	7.42E-03
8	GO:0009523: photosystem II	7.79E-03
9	GO:0009505: plant-type cell wall	1.82E-02
10	GO:0031966: mitochondrial membrane	2.12E-02
11	GO:0005618: cell wall	2.41E-02
12	GO:0005681: spliceosomal complex	2.51E-02
13	GO:0016020: membrane	2.91E-02
14	GO:0010287: plastoglobule	3.24E-02
15	GO:0005654: nucleoplasm	3.30E-02
16	GO:0009579: thylakoid	3.43E-02
17	GO:0009534: chloroplast thylakoid	3.46E-02