co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	0.00E+00
5	GO:0046109: uridine biosynthetic process	0.00E+00
6	GO:0036258: multivesicular body assembly	0.00E+00
7	GO:0033587: shikimate biosynthetic process	0.00E+00
8	GO:0051238: sequestering of metal ion	0.00E+00
9	GO:0051788: response to misfolded protein	8.92E-07
10	GO:0043248: proteasome assembly	3.63E-05
11	GO:0098721: uracil import across plasma membrane	1.33E-04
12	GO:0098702: adenine import across plasma membrane	1.33E-04
13	GO:0080120: CAAX-box protein maturation	1.33E-04
14	GO:0048455: stamen formation	1.33E-04
15	GO:0035266: meristem growth	1.33E-04
16	GO:0098710: guanine import across plasma membrane	1.33E-04
17	GO:0071586: CAAX-box protein processing	1.33E-04
18	GO:0007292: female gamete generation	1.33E-04
19	GO:0015760: glucose-6-phosphate transport	1.33E-04
20	GO:1990641: response to iron ion starvation	1.33E-04
21	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.33E-04
22	GO:0035344: hypoxanthine transport	1.33E-04
23	GO:0006468: protein phosphorylation	1.37E-04
24	GO:0048767: root hair elongation	2.12E-04
25	GO:0007166: cell surface receptor signaling pathway	3.06E-04
26	GO:0060919: auxin influx	3.07E-04
27	GO:0019441: tryptophan catabolic process to kynurenine	3.07E-04
28	GO:0006212: uracil catabolic process	3.07E-04
29	GO:0019374: galactolipid metabolic process	3.07E-04
30	GO:0006101: citrate metabolic process	3.07E-04
31	GO:0019483: beta-alanine biosynthetic process	3.07E-04
32	GO:0015865: purine nucleotide transport	3.07E-04
33	GO:0015712: hexose phosphate transport	3.07E-04
34	GO:0052542: defense response by callose deposition	3.07E-04
35	GO:0046686: response to cadmium ion	3.18E-04
36	GO:0035436: triose phosphate transmembrane transport	5.06E-04
37	GO:0010476: gibberellin mediated signaling pathway	5.06E-04
38	GO:0010325: raffinose family oligosaccharide biosynthetic process	5.06E-04
39	GO:0060968: regulation of gene silencing	5.06E-04
40	GO:0015714: phosphoenolpyruvate transport	5.06E-04
41	GO:0010359: regulation of anion channel activity	5.06E-04
42	GO:0061158: 3'-UTR-mediated mRNA destabilization	5.06E-04
43	GO:0070676: intralumenal vesicle formation	7.24E-04
44	GO:0006986: response to unfolded protein	7.24E-04
45	GO:0001676: long-chain fatty acid metabolic process	7.24E-04
46	GO:0010116: positive regulation of abscisic acid biosynthetic process	7.24E-04
47	GO:2000114: regulation of establishment of cell polarity	7.24E-04
48	GO:0048194: Golgi vesicle budding	7.24E-04
49	GO:2001289: lipid X metabolic process	7.24E-04
50	GO:0070301: cellular response to hydrogen peroxide	7.24E-04
51	GO:0046902: regulation of mitochondrial membrane permeability	7.24E-04
52	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.24E-04
53	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.24E-04
54	GO:0072583: clathrin-dependent endocytosis	7.24E-04
55	GO:0046777: protein autophosphorylation	7.58E-04
56	GO:0006542: glutamine biosynthetic process	9.59E-04
57	GO:0010109: regulation of photosynthesis	9.59E-04
58	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	9.59E-04
59	GO:0015713: phosphoglycerate transport	9.59E-04
60	GO:0009630: gravitropism	1.20E-03
61	GO:0006097: glyoxylate cycle	1.21E-03
62	GO:0034052: positive regulation of plant-type hypersensitive response	1.21E-03
63	GO:0009643: photosynthetic acclimation	1.49E-03
64	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.49E-03
65	GO:0015691: cadmium ion transport	1.49E-03
66	GO:0048827: phyllome development	1.49E-03
67	GO:0048232: male gamete generation	1.49E-03
68	GO:0010358: leaf shaping	1.49E-03
69	GO:1902456: regulation of stomatal opening	1.49E-03
70	GO:0010315: auxin efflux	1.49E-03
71	GO:0010337: regulation of salicylic acid metabolic process	1.49E-03
72	GO:0010029: regulation of seed germination	1.70E-03
73	GO:0048444: floral organ morphogenesis	1.78E-03
74	GO:0048280: vesicle fusion with Golgi apparatus	1.78E-03
75	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.78E-03
76	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.98E-03
77	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.09E-03
78	GO:1902074: response to salt	2.09E-03
79	GO:0008219: cell death	2.09E-03
80	GO:0006955: immune response	2.09E-03
81	GO:0046470: phosphatidylcholine metabolic process	2.09E-03
82	GO:0048528: post-embryonic root development	2.09E-03
83	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.09E-03
84	GO:0071669: plant-type cell wall organization or biogenesis	2.09E-03
85	GO:0030244: cellulose biosynthetic process	2.09E-03
86	GO:0050829: defense response to Gram-negative bacterium	2.09E-03
87	GO:0010119: regulation of stomatal movement	2.41E-03
88	GO:0006102: isocitrate metabolic process	2.42E-03
89	GO:0006644: phospholipid metabolic process	2.42E-03
90	GO:0009819: drought recovery	2.42E-03
91	GO:0006605: protein targeting	2.42E-03
92	GO:0010078: maintenance of root meristem identity	2.42E-03
93	GO:0048766: root hair initiation	2.42E-03
94	GO:0045087: innate immune response	2.64E-03
95	GO:0030968: endoplasmic reticulum unfolded protein response	2.77E-03
96	GO:0043562: cellular response to nitrogen levels	2.77E-03
97	GO:0009808: lignin metabolic process	2.77E-03
98	GO:0009827: plant-type cell wall modification	2.77E-03
99	GO:0009056: catabolic process	3.13E-03
100	GO:0006631: fatty acid metabolic process	3.13E-03
101	GO:0006098: pentose-phosphate shunt	3.13E-03
102	GO:0009744: response to sucrose	3.40E-03
103	GO:0051707: response to other organism	3.40E-03
104	GO:0043069: negative regulation of programmed cell death	3.89E-03
105	GO:0048829: root cap development	3.89E-03
106	GO:0006896: Golgi to vacuole transport	3.89E-03
107	GO:0080167: response to karrikin	3.91E-03
108	GO:0006855: drug transmembrane transport	3.95E-03
109	GO:0048765: root hair cell differentiation	4.30E-03
110	GO:0010015: root morphogenesis	4.30E-03
111	GO:0009809: lignin biosynthetic process	4.56E-03
112	GO:0000266: mitochondrial fission	4.72E-03
113	GO:0012501: programmed cell death	4.72E-03
114	GO:0002213: defense response to insect	4.72E-03
115	GO:0055046: microgametogenesis	5.15E-03
116	GO:0006096: glycolytic process	5.39E-03
117	GO:0048367: shoot system development	5.56E-03
118	GO:0010540: basipetal auxin transport	5.60E-03
119	GO:0009933: meristem structural organization	5.60E-03
120	GO:0009626: plant-type hypersensitive response	5.74E-03
121	GO:0009620: response to fungus	5.92E-03
122	GO:0090351: seedling development	6.06E-03
123	GO:0070588: calcium ion transmembrane transport	6.06E-03
124	GO:0016042: lipid catabolic process	6.18E-03
125	GO:0009408: response to heat	6.41E-03
126	GO:0034976: response to endoplasmic reticulum stress	6.53E-03
127	GO:0018105: peptidyl-serine phosphorylation	6.67E-03
128	GO:0048364: root development	6.76E-03
129	GO:0009737: response to abscisic acid	8.02E-03
130	GO:0031408: oxylipin biosynthetic process	8.02E-03
131	GO:0030433: ubiquitin-dependent ERAD pathway	8.55E-03
132	GO:0009845: seed germination	8.79E-03
133	GO:0010227: floral organ abscission	9.08E-03
134	GO:0006012: galactose metabolic process	9.08E-03
135	GO:0009561: megagametogenesis	9.63E-03
136	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.02E-02
137	GO:0042147: retrograde transport, endosome to Golgi	1.02E-02
138	GO:0040008: regulation of growth	1.07E-02
139	GO:0042335: cuticle development	1.08E-02
140	GO:0000271: polysaccharide biosynthetic process	1.08E-02
141	GO:0010150: leaf senescence	1.12E-02
142	GO:0055072: iron ion homeostasis	1.25E-02
143	GO:0006623: protein targeting to vacuole	1.25E-02
144	GO:0009749: response to glucose	1.25E-02
145	GO:0006635: fatty acid beta-oxidation	1.32E-02
146	GO:0002229: defense response to oomycetes	1.32E-02
147	GO:0006891: intra-Golgi vesicle-mediated transport	1.32E-02
148	GO:0009617: response to bacterium	1.34E-02
149	GO:0030163: protein catabolic process	1.44E-02
150	GO:0006904: vesicle docking involved in exocytosis	1.57E-02
151	GO:0071805: potassium ion transmembrane transport	1.57E-02
152	GO:0051607: defense response to virus	1.64E-02
153	GO:0042128: nitrate assimilation	1.85E-02
154	GO:0006974: cellular response to DNA damage stimulus	1.85E-02
155	GO:0006970: response to osmotic stress	1.88E-02
156	GO:0006888: ER to Golgi vesicle-mediated transport	1.92E-02
157	GO:0055114: oxidation-reduction process	1.94E-02
158	GO:0016049: cell growth	1.99E-02
159	GO:0009832: plant-type cell wall biogenesis	2.14E-02
160	GO:0010311: lateral root formation	2.14E-02
161	GO:0006499: N-terminal protein myristoylation	2.21E-02
162	GO:0009407: toxin catabolic process	2.21E-02
163	GO:0010200: response to chitin	2.24E-02
164	GO:0007568: aging	2.29E-02
165	GO:0006099: tricarboxylic acid cycle	2.52E-02
166	GO:0006839: mitochondrial transport	2.68E-02
167	GO:0006887: exocytosis	2.76E-02
168	GO:0010114: response to red light	2.92E-02
169	GO:0009926: auxin polar transport	2.92E-02
170	GO:0000209: protein polyubiquitination	3.01E-02
171	GO:0009751: response to salicylic acid	3.14E-02
172	GO:0009636: response to toxic substance	3.18E-02
173	GO:0009965: leaf morphogenesis	3.18E-02
174	GO:0031347: regulation of defense response	3.35E-02
175	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.35E-02
176	GO:0006813: potassium ion transport	3.62E-02
177	GO:0010224: response to UV-B	3.71E-02
178	GO:0042545: cell wall modification	4.55E-02
179	GO:0009624: response to nematode	4.65E-02
180	GO:0009742: brassinosteroid mediated signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0005548: phospholipid transporter activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity	0.00E+00
5	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
6	GO:0004674: protein serine/threonine kinase activity	7.90E-08
7	GO:0004383: guanylate cyclase activity	3.35E-06
8	GO:0001653: peptide receptor activity	7.85E-06
9	GO:0005524: ATP binding	9.55E-06
10	GO:0016301: kinase activity	1.61E-05
11	GO:0005496: steroid binding	2.41E-05
12	GO:0004012: phospholipid-translocating ATPase activity	5.10E-05
13	GO:0004620: phospholipase activity	6.86E-05
14	GO:0004714: transmembrane receptor protein tyrosine kinase activity	8.88E-05
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.33E-04
16	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.33E-04
17	GO:0015208: guanine transmembrane transporter activity	1.33E-04
18	GO:0015294: solute:cation symporter activity	1.33E-04
19	GO:0015207: adenine transmembrane transporter activity	1.33E-04
20	GO:0030955: potassium ion binding	1.65E-04
21	GO:0004743: pyruvate kinase activity	1.65E-04
22	GO:0004022: alcohol dehydrogenase (NAD) activity	3.02E-04
23	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.02E-04
24	GO:0010331: gibberellin binding	3.07E-04
25	GO:0003994: aconitate hydratase activity	3.07E-04
26	GO:0015152: glucose-6-phosphate transmembrane transporter activity	3.07E-04
27	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.07E-04
28	GO:0016971: flavin-linked sulfhydryl oxidase activity	3.07E-04
29	GO:0004061: arylformamidase activity	3.07E-04
30	GO:0015036: disulfide oxidoreductase activity	3.07E-04
31	GO:0000287: magnesium ion binding	4.79E-04
32	GO:0016805: dipeptidase activity	5.06E-04
33	GO:0071917: triose-phosphate transmembrane transporter activity	5.06E-04
34	GO:0005047: signal recognition particle binding	5.06E-04
35	GO:0004751: ribose-5-phosphate isomerase activity	5.06E-04
36	GO:0004165: dodecenoyl-CoA delta-isomerase activity	7.24E-04
37	GO:0004300: enoyl-CoA hydratase activity	7.24E-04
38	GO:0015120: phosphoglycerate transmembrane transporter activity	9.59E-04
39	GO:0015210: uracil transmembrane transporter activity	9.59E-04
40	GO:0010328: auxin influx transmembrane transporter activity	9.59E-04
41	GO:0070628: proteasome binding	9.59E-04
42	GO:0005471: ATP:ADP antiporter activity	1.21E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.21E-03
44	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.21E-03
45	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.21E-03
46	GO:0031593: polyubiquitin binding	1.49E-03
47	GO:0036402: proteasome-activating ATPase activity	1.49E-03
48	GO:0015297: antiporter activity	1.62E-03
49	GO:0051753: mannan synthase activity	1.78E-03
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.80E-03
51	GO:0005509: calcium ion binding	1.85E-03
52	GO:0030247: polysaccharide binding	1.89E-03
53	GO:0004683: calmodulin-dependent protein kinase activity	1.89E-03
54	GO:0008235: metalloexopeptidase activity	2.09E-03
55	GO:0015238: drug transmembrane transporter activity	2.20E-03
56	GO:0004034: aldose 1-epimerase activity	2.42E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	2.42E-03
58	GO:0004033: aldo-keto reductase (NADP) activity	2.42E-03
59	GO:0004630: phospholipase D activity	2.77E-03
60	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.77E-03
61	GO:0051539: 4 iron, 4 sulfur cluster binding	3.00E-03
62	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.13E-03
63	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.13E-03
64	GO:0047617: acyl-CoA hydrolase activity	3.50E-03
65	GO:0004177: aminopeptidase activity	4.30E-03
66	GO:0008559: xenobiotic-transporting ATPase activity	4.30E-03
67	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.72E-03
68	GO:0005315: inorganic phosphate transmembrane transporter activity	5.15E-03
69	GO:0005388: calcium-transporting ATPase activity	5.15E-03
70	GO:0010329: auxin efflux transmembrane transporter activity	5.15E-03
71	GO:0004175: endopeptidase activity	5.60E-03
72	GO:0017025: TBP-class protein binding	6.06E-03
73	GO:0003924: GTPase activity	6.41E-03
74	GO:0003954: NADH dehydrogenase activity	7.01E-03
75	GO:0043130: ubiquitin binding	7.01E-03
76	GO:0015079: potassium ion transmembrane transporter activity	7.51E-03
77	GO:0033612: receptor serine/threonine kinase binding	8.02E-03
78	GO:0016760: cellulose synthase (UDP-forming) activity	9.08E-03
79	GO:0003727: single-stranded RNA binding	9.63E-03
80	GO:0003756: protein disulfide isomerase activity	9.63E-03
81	GO:0005215: transporter activity	9.93E-03
82	GO:0030276: clathrin binding	1.13E-02
83	GO:0016853: isomerase activity	1.19E-02
84	GO:0050662: coenzyme binding	1.19E-02
85	GO:0004872: receptor activity	1.25E-02
86	GO:0016491: oxidoreductase activity	1.29E-02
87	GO:0048038: quinone binding	1.32E-02
88	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.32E-02
89	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.43E-02
90	GO:0016759: cellulose synthase activity	1.51E-02
91	GO:0051213: dioxygenase activity	1.71E-02
92	GO:0005507: copper ion binding	2.08E-02
93	GO:0005096: GTPase activator activity	2.14E-02
94	GO:0004222: metalloendopeptidase activity	2.21E-02
95	GO:0005516: calmodulin binding	2.23E-02
96	GO:0030145: manganese ion binding	2.29E-02
97	GO:0005525: GTP binding	2.49E-02
98	GO:0000149: SNARE binding	2.60E-02
99	GO:0004364: glutathione transferase activity	2.84E-02
100	GO:0005484: SNAP receptor activity	2.92E-02
101	GO:0035091: phosphatidylinositol binding	3.09E-02
102	GO:0009055: electron carrier activity	3.42E-02
103	GO:0045330: aspartyl esterase activity	3.89E-02
104	GO:0015171: amino acid transmembrane transporter activity	3.89E-02
105	GO:0045735: nutrient reservoir activity	4.07E-02
106	GO:0030599: pectinesterase activity	4.45E-02
107	GO:0022857: transmembrane transporter activity	4.45E-02
108	GO:0004842: ubiquitin-protein transferase activity	4.79E-02
109	GO:0016887: ATPase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	6.33E-08
3	GO:0030173: integral component of Golgi membrane	5.10E-05
4	GO:0005802: trans-Golgi network	5.48E-05
5	GO:0016021: integral component of membrane	6.35E-05
6	GO:0005768: endosome	7.84E-05
7	GO:0005829: cytosol	9.71E-05
8	GO:0045334: clathrin-coated endocytic vesicle	1.33E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	1.65E-04
10	GO:0031304: intrinsic component of mitochondrial inner membrane	3.07E-04
11	GO:0031314: extrinsic component of mitochondrial inner membrane	3.07E-04
12	GO:0031902: late endosome membrane	3.44E-04
13	GO:0005770: late endosome	9.22E-04
14	GO:0000813: ESCRT I complex	1.21E-03
15	GO:0030140: trans-Golgi network transport vesicle	1.49E-03
16	GO:0031597: cytosolic proteasome complex	1.78E-03
17	GO:0031595: nuclear proteasome complex	2.09E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	2.42E-03
19	GO:0009514: glyoxysome	2.77E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.77E-03
21	GO:0090404: pollen tube tip	4.30E-03
22	GO:0048471: perinuclear region of cytoplasm	4.30E-03
23	GO:0016020: membrane	4.54E-03
24	GO:0000502: proteasome complex	4.56E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	6.06E-03
26	GO:0043234: protein complex	6.53E-03
27	GO:0005839: proteasome core complex	8.02E-03
28	GO:0005783: endoplasmic reticulum	8.56E-03
29	GO:0030136: clathrin-coated vesicle	1.02E-02
30	GO:0009504: cell plate	1.25E-02
31	GO:0000145: exocyst	1.38E-02
32	GO:0005773: vacuole	1.38E-02
33	GO:0071944: cell periphery	1.44E-02
34	GO:0005777: peroxisome	1.58E-02
35	GO:0005789: endoplasmic reticulum membrane	1.62E-02
36	GO:0005737: cytoplasm	2.20E-02
37	GO:0000325: plant-type vacuole	2.29E-02
38	GO:0005618: cell wall	2.33E-02
39	GO:0005794: Golgi apparatus	2.66E-02
40	GO:0031201: SNARE complex	2.76E-02
41	GO:0005743: mitochondrial inner membrane	2.97E-02
42	GO:0009506: plasmodesma	3.24E-02
43	GO:0031966: mitochondrial membrane	3.44E-02
44	GO:0005635: nuclear envelope	3.80E-02
45	GO:0010008: endosome membrane	4.17E-02
46	GO:0005747: mitochondrial respiratory chain complex I	4.17E-02