Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
2GO:0006983: ER overload response0.00E+00
3GO:0001881: receptor recycling0.00E+00
4GO:0006593: ornithine catabolic process0.00E+00
5GO:0006623: protein targeting to vacuole2.33E-06
6GO:0080173: male-female gamete recognition during double fertilization2.76E-05
7GO:0019544: arginine catabolic process to glutamate2.76E-05
8GO:0019521: D-gluconate metabolic process7.01E-05
9GO:0009915: phloem sucrose loading7.01E-05
10GO:0080026: response to indolebutyric acid7.01E-05
11GO:0043066: negative regulation of apoptotic process7.01E-05
12GO:1902000: homogentisate catabolic process7.01E-05
13GO:0009072: aromatic amino acid family metabolic process1.23E-04
14GO:0008333: endosome to lysosome transport1.23E-04
15GO:0051646: mitochondrion localization1.23E-04
16GO:0009410: response to xenobiotic stimulus1.23E-04
17GO:0080024: indolebutyric acid metabolic process1.83E-04
18GO:0097428: protein maturation by iron-sulfur cluster transfer3.18E-04
19GO:0035435: phosphate ion transmembrane transport3.92E-04
20GO:0002238: response to molecule of fungal origin3.92E-04
21GO:0006561: proline biosynthetic process3.92E-04
22GO:0000911: cytokinesis by cell plate formation4.69E-04
23GO:0009612: response to mechanical stimulus4.69E-04
24GO:0010189: vitamin E biosynthetic process4.69E-04
25GO:0050790: regulation of catalytic activity5.49E-04
26GO:0043068: positive regulation of programmed cell death6.32E-04
27GO:0006098: pentose-phosphate shunt8.07E-04
28GO:0009821: alkaloid biosynthetic process8.07E-04
29GO:0051865: protein autoubiquitination8.07E-04
30GO:0043069: negative regulation of programmed cell death9.92E-04
31GO:0000038: very long-chain fatty acid metabolic process1.09E-03
32GO:0006879: cellular iron ion homeostasis1.09E-03
33GO:0012501: programmed cell death1.19E-03
34GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-03
35GO:0010143: cutin biosynthetic process1.40E-03
36GO:0007034: vacuolar transport1.40E-03
37GO:0009266: response to temperature stimulus1.40E-03
38GO:0006636: unsaturated fatty acid biosynthetic process1.62E-03
39GO:0009863: salicylic acid mediated signaling pathway1.73E-03
40GO:0009695: jasmonic acid biosynthetic process1.85E-03
41GO:0031408: oxylipin biosynthetic process1.97E-03
42GO:0009814: defense response, incompatible interaction2.09E-03
43GO:0016226: iron-sulfur cluster assembly2.09E-03
44GO:0042147: retrograde transport, endosome to Golgi2.48E-03
45GO:0006885: regulation of pH2.74E-03
46GO:0061025: membrane fusion2.88E-03
47GO:0006464: cellular protein modification process3.60E-03
48GO:0009615: response to virus4.06E-03
49GO:0009816: defense response to bacterium, incompatible interaction4.22E-03
50GO:0016311: dephosphorylation4.70E-03
51GO:0048767: root hair elongation5.04E-03
52GO:0009407: toxin catabolic process5.21E-03
53GO:0006631: fatty acid metabolic process6.45E-03
54GO:0055114: oxidation-reduction process6.65E-03
55GO:0010114: response to red light6.82E-03
56GO:0051707: response to other organism6.82E-03
57GO:0031347: regulation of defense response7.79E-03
58GO:0042538: hyperosmotic salinity response7.99E-03
59GO:0006812: cation transport7.99E-03
60GO:0009809: lignin biosynthetic process8.40E-03
61GO:0006813: potassium ion transport8.40E-03
62GO:0051603: proteolysis involved in cellular protein catabolic process8.60E-03
63GO:0010224: response to UV-B8.60E-03
64GO:0009626: plant-type hypersensitive response9.87E-03
65GO:0009620: response to fungus1.01E-02
66GO:0009651: response to salt stress1.08E-02
67GO:0000398: mRNA splicing, via spliceosome1.19E-02
68GO:0009058: biosynthetic process1.31E-02
69GO:0010150: leaf senescence1.58E-02
70GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.71E-02
71GO:0009617: response to bacterium1.79E-02
72GO:0015031: protein transport1.84E-02
73GO:0009723: response to ethylene2.39E-02
74GO:0010200: response to chitin2.58E-02
75GO:0016192: vesicle-mediated transport2.61E-02
76GO:0045454: cell redox homeostasis2.86E-02
77GO:0006886: intracellular protein transport2.92E-02
78GO:0016042: lipid catabolic process3.25E-02
79GO:0009751: response to salicylic acid3.29E-02
80GO:0006629: lipid metabolic process3.32E-02
81GO:0009753: response to jasmonic acid3.49E-02
82GO:0006508: proteolysis4.43E-02
RankGO TermAdjusted P value
1GO:0010176: homogentisate phytyltransferase activity0.00E+00
2GO:0016034: maleylacetoacetate isomerase activity0.00E+00
3GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
4GO:0004321: fatty-acyl-CoA synthase activity2.76E-05
5GO:0004103: choline kinase activity7.01E-05
6GO:0036455: iron-sulfur transferase activity7.01E-05
7GO:0004301: epoxide hydrolase activity2.48E-04
8GO:0004659: prenyltransferase activity2.48E-04
9GO:0008198: ferrous iron binding3.18E-04
10GO:0031386: protein tag3.18E-04
11GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.92E-04
12GO:0004866: endopeptidase inhibitor activity3.92E-04
13GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.92E-04
14GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.69E-04
15GO:0052747: sinapyl alcohol dehydrogenase activity6.32E-04
16GO:0016207: 4-coumarate-CoA ligase activity8.07E-04
17GO:0016844: strictosidine synthase activity8.99E-04
18GO:0008794: arsenate reductase (glutaredoxin) activity1.09E-03
19GO:0045551: cinnamyl-alcohol dehydrogenase activity1.19E-03
20GO:0005315: inorganic phosphate transmembrane transporter activity1.29E-03
21GO:0003954: NADH dehydrogenase activity1.73E-03
22GO:0042802: identical protein binding1.83E-03
23GO:0005451: monovalent cation:proton antiporter activity2.61E-03
24GO:0015299: solute:proton antiporter activity2.88E-03
25GO:0004197: cysteine-type endopeptidase activity3.31E-03
26GO:0015385: sodium:proton antiporter activity3.45E-03
27GO:0016791: phosphatase activity3.60E-03
28GO:0004806: triglyceride lipase activity4.54E-03
29GO:0016787: hydrolase activity6.09E-03
30GO:0051539: 4 iron, 4 sulfur cluster binding6.27E-03
31GO:0004364: glutathione transferase activity6.64E-03
32GO:0005484: SNAP receptor activity6.82E-03
33GO:0051537: 2 iron, 2 sulfur cluster binding7.20E-03
34GO:0005198: structural molecule activity7.40E-03
35GO:0008234: cysteine-type peptidase activity9.01E-03
36GO:0016874: ligase activity1.03E-02
37GO:0016746: transferase activity, transferring acyl groups1.10E-02
38GO:0015035: protein disulfide oxidoreductase activity1.10E-02
39GO:0030170: pyridoxal phosphate binding1.36E-02
40GO:0008270: zinc ion binding1.50E-02
41GO:0016491: oxidoreductase activity1.91E-02
42GO:0004601: peroxidase activity2.16E-02
43GO:0016788: hydrolase activity, acting on ester bonds2.19E-02
44GO:0061630: ubiquitin protein ligase activity2.61E-02
45GO:0004722: protein serine/threonine phosphatase activity3.05E-02
46GO:0009055: electron carrier activity3.49E-02
47GO:0016887: ATPase activity4.53E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0031304: intrinsic component of mitochondrial inner membrane7.01E-05
3GO:0005777: peroxisome1.40E-04
4GO:0030904: retromer complex3.92E-04
5GO:0005771: multivesicular body3.92E-04
6GO:0005829: cytosol9.16E-04
7GO:0017119: Golgi transport complex9.92E-04
8GO:0005759: mitochondrial matrix1.32E-03
9GO:0005764: lysosome1.40E-03
10GO:0005770: late endosome2.74E-03
11GO:0009504: cell plate3.02E-03
12GO:0031902: late endosome membrane6.45E-03
13GO:0005635: nuclear envelope8.81E-03
14GO:0005802: trans-Golgi network1.14E-02
15GO:0005768: endosome1.30E-02
16GO:0005615: extracellular space1.71E-02
17GO:0005737: cytoplasm1.85E-02
18GO:0005773: vacuole1.93E-02
19GO:0031969: chloroplast membrane2.51E-02
20GO:0043231: intracellular membrane-bounded organelle3.56E-02
21GO:0016021: integral component of membrane4.09E-02
22GO:0005887: integral component of plasma membrane4.13E-02
23GO:0005774: vacuolar membrane4.99E-02
Gene type



Gene DE type