co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006721: terpenoid metabolic process	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0042742: defense response to bacterium	7.34E-09
5	GO:0009617: response to bacterium	1.88E-08
6	GO:0006468: protein phosphorylation	3.36E-07
7	GO:0009627: systemic acquired resistance	5.10E-07
8	GO:0071456: cellular response to hypoxia	1.42E-06
9	GO:0051707: response to other organism	2.91E-06
10	GO:0010120: camalexin biosynthetic process	3.04E-06
11	GO:0010150: leaf senescence	4.04E-06
12	GO:0006032: chitin catabolic process	7.76E-06
13	GO:0002237: response to molecule of bacterial origin	1.97E-05
14	GO:0009697: salicylic acid biosynthetic process	3.81E-05
15	GO:0030091: protein repair	1.35E-04
16	GO:0009626: plant-type hypersensitive response	1.51E-04
17	GO:0006952: defense response	1.70E-04
18	GO:0010230: alternative respiration	1.75E-04
19	GO:1901183: positive regulation of camalexin biosynthetic process	1.75E-04
20	GO:0015760: glucose-6-phosphate transport	1.75E-04
21	GO:0016487: farnesol metabolic process	1.75E-04
22	GO:1990641: response to iron ion starvation	1.75E-04
23	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.75E-04
24	GO:0010112: regulation of systemic acquired resistance	2.06E-04
25	GO:0009615: response to virus	2.30E-04
26	GO:0000272: polysaccharide catabolic process	3.36E-04
27	GO:0009682: induced systemic resistance	3.36E-04
28	GO:0031349: positive regulation of defense response	3.96E-04
29	GO:0015712: hexose phosphate transport	3.96E-04
30	GO:0006101: citrate metabolic process	3.96E-04
31	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.96E-04
32	GO:0090057: root radial pattern formation	3.96E-04
33	GO:0044419: interspecies interaction between organisms	3.96E-04
34	GO:0040008: regulation of growth	4.21E-04
35	GO:0070588: calcium ion transmembrane transport	5.54E-04
36	GO:0015714: phosphoenolpyruvate transport	6.47E-04
37	GO:1900140: regulation of seedling development	6.47E-04
38	GO:0035436: triose phosphate transmembrane transport	6.47E-04
39	GO:0010272: response to silver ion	6.47E-04
40	GO:0016998: cell wall macromolecule catabolic process	8.23E-04
41	GO:0019438: aromatic compound biosynthetic process	9.23E-04
42	GO:0048194: Golgi vesicle budding	9.23E-04
43	GO:0070301: cellular response to hydrogen peroxide	9.23E-04
44	GO:0050832: defense response to fungus	9.99E-04
45	GO:0015713: phosphoglycerate transport	1.22E-03
46	GO:1901002: positive regulation of response to salt stress	1.22E-03
47	GO:0080142: regulation of salicylic acid biosynthetic process	1.22E-03
48	GO:0010109: regulation of photosynthesis	1.22E-03
49	GO:0060548: negative regulation of cell death	1.22E-03
50	GO:0045487: gibberellin catabolic process	1.56E-03
51	GO:0000304: response to singlet oxygen	1.56E-03
52	GO:0006097: glyoxylate cycle	1.56E-03
53	GO:0034052: positive regulation of plant-type hypersensitive response	1.56E-03
54	GO:0060918: auxin transport	1.91E-03
55	GO:0009643: photosynthetic acclimation	1.91E-03
56	GO:0006561: proline biosynthetic process	1.91E-03
57	GO:0010252: auxin homeostasis	1.96E-03
58	GO:0009751: response to salicylic acid	2.14E-03
59	GO:0051607: defense response to virus	2.21E-03
60	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.30E-03
61	GO:0043090: amino acid import	2.70E-03
62	GO:1900056: negative regulation of leaf senescence	2.70E-03
63	GO:0008219: cell death	3.04E-03
64	GO:0009817: defense response to fungus, incompatible interaction	3.04E-03
65	GO:0031540: regulation of anthocyanin biosynthetic process	3.13E-03
66	GO:0006102: isocitrate metabolic process	3.13E-03
67	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.13E-03
68	GO:0007166: cell surface receptor signaling pathway	3.29E-03
69	GO:0009407: toxin catabolic process	3.35E-03
70	GO:0010262: somatic embryogenesis	3.58E-03
71	GO:0010204: defense response signaling pathway, resistance gene-independent	3.58E-03
72	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.58E-03
73	GO:0006979: response to oxidative stress	4.25E-03
74	GO:0010205: photoinhibition	4.54E-03
75	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.54E-03
76	GO:0009737: response to abscisic acid	4.95E-03
77	GO:0007064: mitotic sister chromatid cohesion	5.05E-03
78	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.05E-03
79	GO:0009688: abscisic acid biosynthetic process	5.05E-03
80	GO:0010162: seed dormancy process	5.05E-03
81	GO:0009636: response to toxic substance	5.56E-03
82	GO:0009089: lysine biosynthetic process via diaminopimelate	5.58E-03
83	GO:0006855: drug transmembrane transport	5.77E-03
84	GO:0015706: nitrate transport	6.13E-03
85	GO:0006790: sulfur compound metabolic process	6.13E-03
86	GO:0012501: programmed cell death	6.13E-03
87	GO:0006820: anion transport	6.13E-03
88	GO:0002213: defense response to insect	6.13E-03
89	GO:0055046: microgametogenesis	6.70E-03
90	GO:0009718: anthocyanin-containing compound biosynthetic process	6.70E-03
91	GO:0010224: response to UV-B	6.90E-03
92	GO:0010143: cutin biosynthetic process	7.28E-03
93	GO:0046854: phosphatidylinositol phosphorylation	7.89E-03
94	GO:0010167: response to nitrate	7.89E-03
95	GO:0034976: response to endoplasmic reticulum stress	8.51E-03
96	GO:0010025: wax biosynthetic process	8.51E-03
97	GO:0005992: trehalose biosynthetic process	9.15E-03
98	GO:0000027: ribosomal large subunit assembly	9.15E-03
99	GO:0009624: response to nematode	9.49E-03
100	GO:0006874: cellular calcium ion homeostasis	9.80E-03
101	GO:0031348: negative regulation of defense response	1.12E-02
102	GO:0009686: gibberellin biosynthetic process	1.19E-02
103	GO:0009651: response to salt stress	1.20E-02
104	GO:0055114: oxidation-reduction process	1.25E-02
105	GO:0009561: megagametogenesis	1.26E-02
106	GO:0042391: regulation of membrane potential	1.41E-02
107	GO:0008360: regulation of cell shape	1.49E-02
108	GO:0009958: positive gravitropism	1.49E-02
109	GO:0048544: recognition of pollen	1.56E-02
110	GO:0009749: response to glucose	1.64E-02
111	GO:0010183: pollen tube guidance	1.64E-02
112	GO:0000302: response to reactive oxygen species	1.72E-02
113	GO:0032502: developmental process	1.81E-02
114	GO:0009733: response to auxin	1.81E-02
115	GO:0009639: response to red or far red light	1.98E-02
116	GO:0009611: response to wounding	2.21E-02
117	GO:0009816: defense response to bacterium, incompatible interaction	2.33E-02
118	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.33E-02
119	GO:0042128: nitrate assimilation	2.42E-02
120	GO:0016311: dephosphorylation	2.61E-02
121	GO:0016049: cell growth	2.61E-02
122	GO:0006508: proteolysis	2.89E-02
123	GO:0055085: transmembrane transport	2.90E-02
124	GO:0006811: ion transport	2.90E-02
125	GO:0006499: N-terminal protein myristoylation	2.90E-02
126	GO:0046686: response to cadmium ion	2.94E-02
127	GO:0048527: lateral root development	3.00E-02
128	GO:0007568: aging	3.00E-02
129	GO:0006865: amino acid transport	3.10E-02
130	GO:0080167: response to karrikin	3.16E-02
131	GO:0045087: innate immune response	3.20E-02
132	GO:0010200: response to chitin	3.27E-02
133	GO:0006099: tricarboxylic acid cycle	3.31E-02
134	GO:0044550: secondary metabolite biosynthetic process	3.44E-02
135	GO:0006839: mitochondrial transport	3.52E-02
136	GO:0006631: fatty acid metabolic process	3.62E-02
137	GO:0042542: response to hydrogen peroxide	3.73E-02
138	GO:0010114: response to red light	3.84E-02
139	GO:0009744: response to sucrose	3.84E-02
140	GO:0009644: response to high light intensity	4.06E-02
141	GO:0031347: regulation of defense response	4.39E-02
142	GO:0032259: methylation	4.46E-02
143	GO:0009846: pollen germination	4.51E-02
144	GO:0042538: hyperosmotic salinity response	4.51E-02
145	GO:0009408: response to heat	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0047886: farnesol dehydrogenase activity	0.00E+00
3	GO:0035885: exochitinase activity	0.00E+00
4	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
5	GO:0008843: endochitinase activity	0.00E+00
6	GO:0004674: protein serine/threonine kinase activity	1.22E-07
7	GO:0016301: kinase activity	8.83E-06
8	GO:0010279: indole-3-acetic acid amido synthetase activity	2.35E-05
9	GO:0008061: chitin binding	2.39E-05
10	GO:0005524: ATP binding	5.86E-05
11	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	7.89E-05
12	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.75E-04
13	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.75E-04
14	GO:0030247: polysaccharide binding	2.87E-04
15	GO:0004568: chitinase activity	2.90E-04
16	GO:0004338: glucan exo-1,3-beta-glucosidase activity	3.96E-04
17	GO:0045543: gibberellin 2-beta-dioxygenase activity	3.96E-04
18	GO:0003994: aconitate hydratase activity	3.96E-04
19	GO:0015152: glucose-6-phosphate transmembrane transporter activity	3.96E-04
20	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.98E-04
21	GO:0005388: calcium-transporting ATPase activity	4.39E-04
22	GO:0004190: aspartic-type endopeptidase activity	5.54E-04
23	GO:0005516: calmodulin binding	6.20E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.47E-04
25	GO:0004383: guanylate cyclase activity	6.47E-04
26	GO:0071917: triose-phosphate transmembrane transporter activity	6.47E-04
27	GO:0035529: NADH pyrophosphatase activity	9.23E-04
28	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	9.23E-04
29	GO:0050660: flavin adenine dinucleotide binding	1.09E-03
30	GO:0015120: phosphoglycerate transmembrane transporter activity	1.22E-03
31	GO:0047631: ADP-ribose diphosphatase activity	1.56E-03
32	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.56E-03
33	GO:0000210: NAD+ diphosphatase activity	1.91E-03
34	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.30E-03
35	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.30E-03
36	GO:0102391: decanoate--CoA ligase activity	2.30E-03
37	GO:0004012: phospholipid-translocating ATPase activity	2.30E-03
38	GO:0009055: electron carrier activity	2.43E-03
39	GO:0015297: antiporter activity	2.62E-03
40	GO:0004467: long-chain fatty acid-CoA ligase activity	2.70E-03
41	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.89E-03
42	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.13E-03
43	GO:0015288: porin activity	3.13E-03
44	GO:0015238: drug transmembrane transporter activity	3.19E-03
45	GO:0003843: 1,3-beta-D-glucan synthase activity	3.58E-03
46	GO:0008308: voltage-gated anion channel activity	3.58E-03
47	GO:0015112: nitrate transmembrane transporter activity	4.54E-03
48	GO:0004364: glutathione transferase activity	4.75E-03
49	GO:0008171: O-methyltransferase activity	5.05E-03
50	GO:0008559: xenobiotic-transporting ATPase activity	5.58E-03
51	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.70E-03
52	GO:0004022: alcohol dehydrogenase (NAD) activity	6.70E-03
53	GO:0005315: inorganic phosphate transmembrane transporter activity	6.70E-03
54	GO:0005262: calcium channel activity	6.70E-03
55	GO:0015114: phosphate ion transmembrane transporter activity	6.70E-03
56	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.28E-03
57	GO:0005217: intracellular ligand-gated ion channel activity	7.89E-03
58	GO:0004970: ionotropic glutamate receptor activity	7.89E-03
59	GO:0030552: cAMP binding	7.89E-03
60	GO:0004867: serine-type endopeptidase inhibitor activity	7.89E-03
61	GO:0030553: cGMP binding	7.89E-03
62	GO:0030246: carbohydrate binding	8.20E-03
63	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.80E-03
64	GO:0005216: ion channel activity	9.80E-03
65	GO:0033612: receptor serine/threonine kinase binding	1.05E-02
66	GO:0008810: cellulase activity	1.19E-02
67	GO:0003756: protein disulfide isomerase activity	1.26E-02
68	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.26E-02
69	GO:0005509: calcium ion binding	1.35E-02
70	GO:0005249: voltage-gated potassium channel activity	1.41E-02
71	GO:0030551: cyclic nucleotide binding	1.41E-02
72	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.53E-02
73	GO:0050662: coenzyme binding	1.56E-02
74	GO:0008483: transaminase activity	2.06E-02
75	GO:0004683: calmodulin-dependent protein kinase activity	2.52E-02
76	GO:0043565: sequence-specific DNA binding	2.66E-02
77	GO:0004672: protein kinase activity	2.69E-02
78	GO:0030145: manganese ion binding	3.00E-02
79	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.31E-02
80	GO:0019825: oxygen binding	3.35E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	3.52E-02
82	GO:0050661: NADP binding	3.52E-02
83	GO:0015293: symporter activity	4.17E-02
84	GO:0051287: NAD binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.07E-06
2	GO:0005618: cell wall	4.89E-05
3	GO:0016021: integral component of membrane	5.44E-05
4	GO:0030660: Golgi-associated vesicle membrane	1.22E-03
5	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.22E-03
6	GO:0005783: endoplasmic reticulum	2.84E-03
7	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.13E-03
8	GO:0000325: plant-type vacuole	3.51E-03
9	GO:0000148: 1,3-beta-D-glucan synthase complex	3.58E-03
10	GO:0046930: pore complex	3.58E-03
11	GO:0046658: anchored component of plasma membrane	3.96E-03
12	GO:0031090: organelle membrane	4.05E-03
13	GO:0005774: vacuolar membrane	4.36E-03
14	GO:0005576: extracellular region	4.74E-03
15	GO:0048046: apoplast	4.84E-03
16	GO:0005765: lysosomal membrane	5.58E-03
17	GO:0031225: anchored component of membrane	1.03E-02
18	GO:0005741: mitochondrial outer membrane	1.05E-02
19	GO:0005770: late endosome	1.49E-02
20	GO:0005887: integral component of plasma membrane	1.54E-02
21	GO:0009504: cell plate	1.64E-02
22	GO:0005788: endoplasmic reticulum lumen	2.33E-02
23	GO:0031969: chloroplast membrane	3.16E-02
24	GO:0022625: cytosolic large ribosomal subunit	3.33E-02
25	GO:0090406: pollen tube	3.84E-02