GO Enrichment Analysis of Co-expressed Genes with
AT3G60370
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 3 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 9 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 10 | GO:0006412: translation | 4.59E-14 |
| 11 | GO:0015979: photosynthesis | 2.85E-10 |
| 12 | GO:0032544: plastid translation | 4.43E-10 |
| 13 | GO:0042254: ribosome biogenesis | 1.02E-09 |
| 14 | GO:0009735: response to cytokinin | 1.44E-08 |
| 15 | GO:0010027: thylakoid membrane organization | 3.31E-08 |
| 16 | GO:0009658: chloroplast organization | 3.06E-07 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 1.88E-06 |
| 18 | GO:0010196: nonphotochemical quenching | 2.93E-06 |
| 19 | GO:0090391: granum assembly | 9.64E-06 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 2.08E-05 |
| 21 | GO:0042549: photosystem II stabilization | 9.33E-05 |
| 22 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.18E-04 |
| 23 | GO:0009772: photosynthetic electron transport in photosystem II | 1.69E-04 |
| 24 | GO:0006353: DNA-templated transcription, termination | 2.16E-04 |
| 25 | GO:0043489: RNA stabilization | 2.39E-04 |
| 26 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.39E-04 |
| 27 | GO:1904964: positive regulation of phytol biosynthetic process | 2.39E-04 |
| 28 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.39E-04 |
| 29 | GO:0009828: plant-type cell wall loosening | 3.26E-04 |
| 30 | GO:0010205: photoinhibition | 3.83E-04 |
| 31 | GO:0006949: syncytium formation | 4.48E-04 |
| 32 | GO:0034755: iron ion transmembrane transport | 5.29E-04 |
| 33 | GO:0010115: regulation of abscisic acid biosynthetic process | 5.29E-04 |
| 34 | GO:0018026: peptidyl-lysine monomethylation | 5.29E-04 |
| 35 | GO:0001736: establishment of planar polarity | 5.29E-04 |
| 36 | GO:0006568: tryptophan metabolic process | 5.29E-04 |
| 37 | GO:0010024: phytochromobilin biosynthetic process | 5.29E-04 |
| 38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.29E-04 |
| 39 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.92E-04 |
| 40 | GO:0006788: heme oxidation | 8.60E-04 |
| 41 | GO:0006954: inflammatory response | 8.60E-04 |
| 42 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.38E-04 |
| 43 | GO:0006424: glutamyl-tRNA aminoacylation | 1.23E-03 |
| 44 | GO:0046739: transport of virus in multicellular host | 1.23E-03 |
| 45 | GO:0006986: response to unfolded protein | 1.23E-03 |
| 46 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.23E-03 |
| 47 | GO:2001141: regulation of RNA biosynthetic process | 1.23E-03 |
| 48 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.23E-03 |
| 49 | GO:0009152: purine ribonucleotide biosynthetic process | 1.23E-03 |
| 50 | GO:0046653: tetrahydrofolate metabolic process | 1.23E-03 |
| 51 | GO:0010239: chloroplast mRNA processing | 1.23E-03 |
| 52 | GO:0009664: plant-type cell wall organization | 1.41E-03 |
| 53 | GO:0009306: protein secretion | 1.61E-03 |
| 54 | GO:0045727: positive regulation of translation | 1.64E-03 |
| 55 | GO:0015994: chlorophyll metabolic process | 1.64E-03 |
| 56 | GO:0032543: mitochondrial translation | 2.09E-03 |
| 57 | GO:0006564: L-serine biosynthetic process | 2.09E-03 |
| 58 | GO:0010236: plastoquinone biosynthetic process | 2.09E-03 |
| 59 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.57E-03 |
| 60 | GO:0042793: transcription from plastid promoter | 2.57E-03 |
| 61 | GO:0010190: cytochrome b6f complex assembly | 2.57E-03 |
| 62 | GO:0006561: proline biosynthetic process | 2.57E-03 |
| 63 | GO:0006751: glutathione catabolic process | 2.57E-03 |
| 64 | GO:0000470: maturation of LSU-rRNA | 2.57E-03 |
| 65 | GO:1901259: chloroplast rRNA processing | 3.09E-03 |
| 66 | GO:0042372: phylloquinone biosynthetic process | 3.09E-03 |
| 67 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.09E-03 |
| 68 | GO:0017148: negative regulation of translation | 3.09E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 3.09E-03 |
| 70 | GO:0006400: tRNA modification | 3.64E-03 |
| 71 | GO:0016042: lipid catabolic process | 4.10E-03 |
| 72 | GO:0042255: ribosome assembly | 4.23E-03 |
| 73 | GO:0030091: protein repair | 4.23E-03 |
| 74 | GO:0006605: protein targeting | 4.23E-03 |
| 75 | GO:0048564: photosystem I assembly | 4.23E-03 |
| 76 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.84E-03 |
| 77 | GO:0071482: cellular response to light stimulus | 4.84E-03 |
| 78 | GO:0009451: RNA modification | 4.99E-03 |
| 79 | GO:0009631: cold acclimation | 5.43E-03 |
| 80 | GO:0010206: photosystem II repair | 5.48E-03 |
| 81 | GO:0009245: lipid A biosynthetic process | 5.48E-03 |
| 82 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.15E-03 |
| 83 | GO:0034599: cellular response to oxidative stress | 6.23E-03 |
| 84 | GO:0030001: metal ion transport | 6.79E-03 |
| 85 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.85E-03 |
| 86 | GO:0009688: abscisic acid biosynthetic process | 6.85E-03 |
| 87 | GO:0048829: root cap development | 6.85E-03 |
| 88 | GO:0043085: positive regulation of catalytic activity | 7.58E-03 |
| 89 | GO:0006879: cellular iron ion homeostasis | 7.58E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 7.58E-03 |
| 91 | GO:0009750: response to fructose | 7.58E-03 |
| 92 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.58E-03 |
| 93 | GO:0048765: root hair cell differentiation | 7.58E-03 |
| 94 | GO:0010114: response to red light | 7.68E-03 |
| 95 | GO:0009826: unidimensional cell growth | 8.06E-03 |
| 96 | GO:0010628: positive regulation of gene expression | 9.11E-03 |
| 97 | GO:0006006: glucose metabolic process | 9.11E-03 |
| 98 | GO:2000012: regulation of auxin polar transport | 9.11E-03 |
| 99 | GO:0019253: reductive pentose-phosphate cycle | 9.92E-03 |
| 100 | GO:0010207: photosystem II assembly | 9.92E-03 |
| 101 | GO:0010143: cutin biosynthetic process | 9.92E-03 |
| 102 | GO:0009416: response to light stimulus | 1.02E-02 |
| 103 | GO:0006364: rRNA processing | 1.04E-02 |
| 104 | GO:0000027: ribosomal large subunit assembly | 1.25E-02 |
| 105 | GO:0009793: embryo development ending in seed dormancy | 1.38E-02 |
| 106 | GO:0045454: cell redox homeostasis | 1.40E-02 |
| 107 | GO:0031408: oxylipin biosynthetic process | 1.43E-02 |
| 108 | GO:0003333: amino acid transmembrane transport | 1.43E-02 |
| 109 | GO:0016226: iron-sulfur cluster assembly | 1.53E-02 |
| 110 | GO:0042335: cuticle development | 1.93E-02 |
| 111 | GO:0080022: primary root development | 1.93E-02 |
| 112 | GO:0008033: tRNA processing | 1.93E-02 |
| 113 | GO:0000413: protein peptidyl-prolyl isomerization | 1.93E-02 |
| 114 | GO:0009958: positive gravitropism | 2.03E-02 |
| 115 | GO:0006662: glycerol ether metabolic process | 2.03E-02 |
| 116 | GO:0010182: sugar mediated signaling pathway | 2.03E-02 |
| 117 | GO:0015986: ATP synthesis coupled proton transport | 2.14E-02 |
| 118 | GO:0009790: embryo development | 2.17E-02 |
| 119 | GO:0006633: fatty acid biosynthetic process | 2.33E-02 |
| 120 | GO:0000302: response to reactive oxygen species | 2.36E-02 |
| 121 | GO:0016032: viral process | 2.47E-02 |
| 122 | GO:0032502: developmental process | 2.47E-02 |
| 123 | GO:0045490: pectin catabolic process | 2.56E-02 |
| 124 | GO:0030163: protein catabolic process | 2.59E-02 |
| 125 | GO:0042742: defense response to bacterium | 2.93E-02 |
| 126 | GO:0009627: systemic acquired resistance | 3.32E-02 |
| 127 | GO:0016311: dephosphorylation | 3.58E-02 |
| 128 | GO:0018298: protein-chromophore linkage | 3.71E-02 |
| 129 | GO:0009817: defense response to fungus, incompatible interaction | 3.71E-02 |
| 130 | GO:0010311: lateral root formation | 3.84E-02 |
| 131 | GO:0006865: amino acid transport | 4.25E-02 |
| 132 | GO:0045087: innate immune response | 4.39E-02 |
| 133 | GO:0009637: response to blue light | 4.39E-02 |
| 134 | GO:0009853: photorespiration | 4.39E-02 |
| 135 | GO:0055114: oxidation-reduction process | 4.47E-02 |
| 136 | GO:0009409: response to cold | 4.55E-02 |
| 137 | GO:0006839: mitochondrial transport | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 7 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 7.56E-23 |
| 9 | GO:0003735: structural constituent of ribosome | 4.13E-15 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.30E-05 |
| 11 | GO:0016851: magnesium chelatase activity | 2.19E-05 |
| 12 | GO:0043023: ribosomal large subunit binding | 2.19E-05 |
| 13 | GO:0008266: poly(U) RNA binding | 3.98E-05 |
| 14 | GO:0016788: hydrolase activity, acting on ester bonds | 4.84E-05 |
| 15 | GO:0005528: FK506 binding | 6.71E-05 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 2.39E-04 |
| 17 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.39E-04 |
| 18 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.39E-04 |
| 19 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.39E-04 |
| 20 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.29E-04 |
| 21 | GO:0016630: protochlorophyllide reductase activity | 5.29E-04 |
| 22 | GO:0047746: chlorophyllase activity | 5.29E-04 |
| 23 | GO:0003839: gamma-glutamylcyclotransferase activity | 5.29E-04 |
| 24 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.29E-04 |
| 25 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.29E-04 |
| 26 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 8.60E-04 |
| 27 | GO:0008864: formyltetrahydrofolate deformylase activity | 8.60E-04 |
| 28 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.60E-04 |
| 29 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 8.60E-04 |
| 30 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 8.60E-04 |
| 31 | GO:0008097: 5S rRNA binding | 1.23E-03 |
| 32 | GO:0001872: (1->3)-beta-D-glucan binding | 1.23E-03 |
| 33 | GO:0030570: pectate lyase activity | 1.48E-03 |
| 34 | GO:0043495: protein anchor | 1.64E-03 |
| 35 | GO:0004392: heme oxygenase (decyclizing) activity | 1.64E-03 |
| 36 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.64E-03 |
| 37 | GO:0004659: prenyltransferase activity | 1.64E-03 |
| 38 | GO:0016279: protein-lysine N-methyltransferase activity | 1.64E-03 |
| 39 | GO:0001053: plastid sigma factor activity | 1.64E-03 |
| 40 | GO:0010011: auxin binding | 1.64E-03 |
| 41 | GO:0016987: sigma factor activity | 1.64E-03 |
| 42 | GO:0010328: auxin influx transmembrane transporter activity | 1.64E-03 |
| 43 | GO:0003723: RNA binding | 1.96E-03 |
| 44 | GO:0004040: amidase activity | 2.09E-03 |
| 45 | GO:0003959: NADPH dehydrogenase activity | 2.09E-03 |
| 46 | GO:0004130: cytochrome-c peroxidase activity | 2.57E-03 |
| 47 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.57E-03 |
| 48 | GO:0031177: phosphopantetheine binding | 2.57E-03 |
| 49 | GO:0016688: L-ascorbate peroxidase activity | 2.57E-03 |
| 50 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.57E-03 |
| 51 | GO:0052689: carboxylic ester hydrolase activity | 2.76E-03 |
| 52 | GO:0000035: acyl binding | 3.09E-03 |
| 53 | GO:0051920: peroxiredoxin activity | 3.09E-03 |
| 54 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 3.09E-03 |
| 55 | GO:0019899: enzyme binding | 3.64E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 4.23E-03 |
| 57 | GO:0043022: ribosome binding | 4.23E-03 |
| 58 | GO:0016209: antioxidant activity | 4.23E-03 |
| 59 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.23E-03 |
| 60 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.70E-03 |
| 61 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.84E-03 |
| 62 | GO:0047617: acyl-CoA hydrolase activity | 6.15E-03 |
| 63 | GO:0005381: iron ion transmembrane transporter activity | 6.15E-03 |
| 64 | GO:0008047: enzyme activator activity | 6.85E-03 |
| 65 | GO:0005509: calcium ion binding | 7.90E-03 |
| 66 | GO:0004022: alcohol dehydrogenase (NAD) activity | 9.11E-03 |
| 67 | GO:0051287: NAD binding | 9.31E-03 |
| 68 | GO:0051536: iron-sulfur cluster binding | 1.25E-02 |
| 69 | GO:0051087: chaperone binding | 1.34E-02 |
| 70 | GO:0016491: oxidoreductase activity | 1.46E-02 |
| 71 | GO:0016746: transferase activity, transferring acyl groups | 1.52E-02 |
| 72 | GO:0022891: substrate-specific transmembrane transporter activity | 1.62E-02 |
| 73 | GO:0003727: single-stranded RNA binding | 1.72E-02 |
| 74 | GO:0047134: protein-disulfide reductase activity | 1.82E-02 |
| 75 | GO:0016829: lyase activity | 2.01E-02 |
| 76 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.03E-02 |
| 77 | GO:0008080: N-acetyltransferase activity | 2.03E-02 |
| 78 | GO:0050662: coenzyme binding | 2.14E-02 |
| 79 | GO:0004791: thioredoxin-disulfide reductase activity | 2.14E-02 |
| 80 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.59E-02 |
| 81 | GO:0016791: phosphatase activity | 2.71E-02 |
| 82 | GO:0008483: transaminase activity | 2.83E-02 |
| 83 | GO:0016597: amino acid binding | 2.95E-02 |
| 84 | GO:0016168: chlorophyll binding | 3.19E-02 |
| 85 | GO:0030247: polysaccharide binding | 3.45E-02 |
| 86 | GO:0008236: serine-type peptidase activity | 3.58E-02 |
| 87 | GO:0003993: acid phosphatase activity | 4.53E-02 |
| 88 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.81E-02 |
| 89 | GO:0050661: NADP binding | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 3.17E-58 |
| 5 | GO:0009570: chloroplast stroma | 1.79E-44 |
| 6 | GO:0009941: chloroplast envelope | 6.29E-33 |
| 7 | GO:0009579: thylakoid | 1.66E-27 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 8.56E-23 |
| 9 | GO:0009534: chloroplast thylakoid | 6.69E-19 |
| 10 | GO:0005840: ribosome | 8.14E-18 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 4.42E-16 |
| 12 | GO:0031977: thylakoid lumen | 6.19E-12 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 4.36E-08 |
| 14 | GO:0019898: extrinsic component of membrane | 3.61E-07 |
| 15 | GO:0010007: magnesium chelatase complex | 9.64E-06 |
| 16 | GO:0042651: thylakoid membrane | 7.83E-05 |
| 17 | GO:0016020: membrane | 1.69E-04 |
| 18 | GO:0009547: plastid ribosome | 2.39E-04 |
| 19 | GO:0031969: chloroplast membrane | 4.87E-04 |
| 20 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.29E-04 |
| 21 | GO:0030095: chloroplast photosystem II | 7.56E-04 |
| 22 | GO:0015935: small ribosomal subunit | 1.25E-03 |
| 23 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.57E-03 |
| 24 | GO:0009295: nucleoid | 3.21E-03 |
| 25 | GO:0010319: stromule | 3.21E-03 |
| 26 | GO:0009986: cell surface | 3.64E-03 |
| 27 | GO:0009533: chloroplast stromal thylakoid | 3.64E-03 |
| 28 | GO:0015934: large ribosomal subunit | 5.43E-03 |
| 29 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.48E-03 |
| 30 | GO:0090404: pollen tube tip | 7.58E-03 |
| 31 | GO:0000311: plastid large ribosomal subunit | 8.33E-03 |
| 32 | GO:0009508: plastid chromosome | 9.11E-03 |
| 33 | GO:0000312: plastid small ribosomal subunit | 9.92E-03 |
| 34 | GO:0022625: cytosolic large ribosomal subunit | 1.19E-02 |
| 35 | GO:0009536: plastid | 1.29E-02 |
| 36 | GO:0010287: plastoglobule | 1.76E-02 |
| 37 | GO:0009523: photosystem II | 2.25E-02 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 3.07E-02 |
| 39 | GO:0022626: cytosolic ribosome | 3.54E-02 |
| 40 | GO:0005618: cell wall | 3.78E-02 |