co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0097164: ammonium ion metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:0042493: response to drug	0.00E+00
7	GO:0006412: translation	1.96E-07
8	GO:0070509: calcium ion import	8.43E-05
9	GO:0007263: nitric oxide mediated signal transduction	8.43E-05
10	GO:0043489: RNA stabilization	8.43E-05
11	GO:0042547: cell wall modification involved in multidimensional cell growth	8.43E-05
12	GO:0042371: vitamin K biosynthetic process	8.43E-05
13	GO:0060627: regulation of vesicle-mediated transport	8.43E-05
14	GO:0009735: response to cytokinin	1.62E-04
15	GO:0042254: ribosome biogenesis	1.86E-04
16	GO:0070981: L-asparagine biosynthetic process	2.00E-04
17	GO:0001736: establishment of planar polarity	2.00E-04
18	GO:0006529: asparagine biosynthetic process	2.00E-04
19	GO:0042538: hyperosmotic salinity response	2.27E-04
20	GO:0006833: water transport	2.29E-04
21	GO:0015840: urea transport	3.35E-04
22	GO:2001295: malonyl-CoA biosynthetic process	3.35E-04
23	GO:0000413: protein peptidyl-prolyl isomerization	4.74E-04
24	GO:0009650: UV protection	4.84E-04
25	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	4.84E-04
26	GO:0015976: carbon utilization	6.44E-04
27	GO:0045490: pectin catabolic process	7.93E-04
28	GO:0048827: phyllome development	9.94E-04
29	GO:0042549: photosystem II stabilization	9.94E-04
30	GO:0010411: xyloglucan metabolic process	1.04E-03
31	GO:0009416: response to light stimulus	1.13E-03
32	GO:0042372: phylloquinone biosynthetic process	1.18E-03
33	GO:0009612: response to mechanical stimulus	1.18E-03
34	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.18E-03
35	GO:0006694: steroid biosynthetic process	1.18E-03
36	GO:0009826: unidimensional cell growth	1.29E-03
37	GO:0009645: response to low light intensity stimulus	1.39E-03
38	GO:0009610: response to symbiotic fungus	1.39E-03
39	GO:0030091: protein repair	1.60E-03
40	GO:0032544: plastid translation	1.83E-03
41	GO:0009808: lignin metabolic process	1.83E-03
42	GO:0009932: cell tip growth	1.83E-03
43	GO:0042546: cell wall biogenesis	1.92E-03
44	GO:0048829: root cap development	2.56E-03
45	GO:0006949: syncytium formation	2.56E-03
46	GO:0048765: root hair cell differentiation	2.82E-03
47	GO:0006006: glucose metabolic process	3.37E-03
48	GO:0010229: inflorescence development	3.37E-03
49	GO:0006541: glutamine metabolic process	3.66E-03
50	GO:0019253: reductive pentose-phosphate cycle	3.66E-03
51	GO:0010207: photosystem II assembly	3.66E-03
52	GO:0010540: basipetal auxin transport	3.66E-03
53	GO:0010143: cutin biosynthetic process	3.66E-03
54	GO:0000027: ribosomal large subunit assembly	4.57E-03
55	GO:0003333: amino acid transmembrane transport	5.22E-03
56	GO:0009814: defense response, incompatible interaction	5.55E-03
57	GO:0009411: response to UV	5.89E-03
58	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.89E-03
59	GO:0042391: regulation of membrane potential	6.97E-03
60	GO:0034220: ion transmembrane transport	6.97E-03
61	GO:0009958: positive gravitropism	7.34E-03
62	GO:0009646: response to absence of light	7.72E-03
63	GO:0048825: cotyledon development	8.10E-03
64	GO:0071554: cell wall organization or biogenesis	8.50E-03
65	GO:0016132: brassinosteroid biosynthetic process	8.50E-03
66	GO:0009630: gravitropism	8.90E-03
67	GO:0009658: chloroplast organization	9.31E-03
68	GO:0009828: plant-type cell wall loosening	9.72E-03
69	GO:0009911: positive regulation of flower development	1.10E-02
70	GO:0010027: thylakoid membrane organization	1.10E-02
71	GO:0009627: systemic acquired resistance	1.19E-02
72	GO:0016311: dephosphorylation	1.28E-02
73	GO:0010311: lateral root formation	1.37E-02
74	GO:0009407: toxin catabolic process	1.42E-02
75	GO:0009834: plant-type secondary cell wall biogenesis	1.42E-02
76	GO:0009414: response to water deprivation	1.43E-02
77	GO:0009631: cold acclimation	1.47E-02
78	GO:0071555: cell wall organization	1.47E-02
79	GO:0006865: amino acid transport	1.52E-02
80	GO:0045087: innate immune response	1.57E-02
81	GO:0016042: lipid catabolic process	1.66E-02
82	GO:0009733: response to auxin	1.70E-02
83	GO:0006839: mitochondrial transport	1.72E-02
84	GO:0030001: metal ion transport	1.72E-02
85	GO:0006631: fatty acid metabolic process	1.77E-02
86	GO:0009926: auxin polar transport	1.88E-02
87	GO:0009636: response to toxic substance	2.04E-02
88	GO:0009664: plant-type cell wall organization	2.21E-02
89	GO:0006810: transport	2.39E-02
90	GO:0009734: auxin-activated signaling pathway	2.41E-02
91	GO:0006096: glycolytic process	2.62E-02
92	GO:0009626: plant-type hypersensitive response	2.74E-02
93	GO:0009624: response to nematode	2.98E-02
94	GO:0006396: RNA processing	3.05E-02
95	GO:0055085: transmembrane transport	3.85E-02
96	GO:0009790: embryo development	3.91E-02
97	GO:0006457: protein folding	3.92E-02
98	GO:0006633: fatty acid biosynthetic process	4.12E-02
99	GO:0009793: embryo development ending in seed dormancy	4.19E-02
100	GO:0040008: regulation of growth	4.26E-02
101	GO:0009451: RNA modification	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
5	GO:0019843: rRNA binding	3.79E-11
6	GO:0003735: structural constituent of ribosome	1.43E-08
7	GO:0030570: pectate lyase activity	1.25E-05
8	GO:0004071: aspartate-ammonia ligase activity	8.43E-05
9	GO:0015200: methylammonium transmembrane transporter activity	8.43E-05
10	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	8.43E-05
11	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	8.43E-05
12	GO:0008266: poly(U) RNA binding	1.80E-04
13	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.00E-04
14	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.00E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.00E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.05E-04
17	GO:0052689: carboxylic ester hydrolase activity	3.03E-04
18	GO:0050734: hydroxycinnamoyltransferase activity	3.35E-04
19	GO:0004075: biotin carboxylase activity	3.35E-04
20	GO:0030267: glyoxylate reductase (NADP) activity	3.35E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.35E-04
22	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	3.35E-04
23	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	3.35E-04
24	GO:0070330: aromatase activity	3.35E-04
25	GO:0016829: lyase activity	5.85E-04
26	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.25E-04
27	GO:0010328: auxin influx transmembrane transporter activity	6.44E-04
28	GO:0015204: urea transmembrane transporter activity	6.44E-04
29	GO:0010011: auxin binding	6.44E-04
30	GO:0018685: alkane 1-monooxygenase activity	8.14E-04
31	GO:0003989: acetyl-CoA carboxylase activity	8.14E-04
32	GO:0015250: water channel activity	8.91E-04
33	GO:0016208: AMP binding	9.94E-04
34	GO:0008519: ammonium transmembrane transporter activity	9.94E-04
35	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.04E-03
36	GO:0005261: cation channel activity	1.18E-03
37	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.18E-03
38	GO:0005242: inward rectifier potassium channel activity	1.18E-03
39	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.18E-03
40	GO:0016788: hydrolase activity, acting on ester bonds	1.39E-03
41	GO:0003993: acid phosphatase activity	1.50E-03
42	GO:0047617: acyl-CoA hydrolase activity	2.30E-03
43	GO:0004871: signal transducer activity	2.36E-03
44	GO:0008794: arsenate reductase (glutaredoxin) activity	2.82E-03
45	GO:0004089: carbonate dehydratase activity	3.37E-03
46	GO:0005262: calcium channel activity	3.37E-03
47	GO:0030552: cAMP binding	3.95E-03
48	GO:0030553: cGMP binding	3.95E-03
49	GO:0005528: FK506 binding	4.57E-03
50	GO:0005216: ion channel activity	4.89E-03
51	GO:0030551: cyclic nucleotide binding	6.97E-03
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.54E-03
53	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.01E-02
54	GO:0016413: O-acetyltransferase activity	1.06E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.47E-02
56	GO:0030145: manganese ion binding	1.47E-02
57	GO:0050661: NADP binding	1.72E-02
58	GO:0004364: glutathione transferase activity	1.83E-02
59	GO:0051537: 2 iron, 2 sulfur cluster binding	1.99E-02
60	GO:0015293: symporter activity	2.04E-02
61	GO:0051287: NAD binding	2.15E-02
62	GO:0015171: amino acid transmembrane transporter activity	2.50E-02
63	GO:0045735: nutrient reservoir activity	2.62E-02
64	GO:0015035: protein disulfide oxidoreductase activity	3.05E-02
65	GO:0046872: metal ion binding	3.12E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.19E-02
67	GO:0005516: calmodulin binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	4.19E-13
3	GO:0009941: chloroplast envelope	6.05E-12
4	GO:0009507: chloroplast	8.38E-12
5	GO:0009579: thylakoid	5.49E-10
6	GO:0005840: ribosome	8.84E-09
7	GO:0009535: chloroplast thylakoid membrane	3.11E-07
8	GO:0009543: chloroplast thylakoid lumen	2.13E-06
9	GO:0031977: thylakoid lumen	6.50E-06
10	GO:0016020: membrane	1.38E-05
11	GO:0048046: apoplast	2.05E-05
12	GO:0009547: plastid ribosome	8.43E-05
13	GO:0000311: plastid large ribosomal subunit	1.37E-04
14	GO:0005618: cell wall	1.52E-04
15	GO:0009505: plant-type cell wall	2.20E-04
16	GO:0042807: central vacuole	1.39E-03
17	GO:0009986: cell surface	1.39E-03
18	GO:0009534: chloroplast thylakoid	1.50E-03
19	GO:0000326: protein storage vacuole	1.83E-03
20	GO:0008180: COP9 signalosome	2.06E-03
21	GO:0031225: anchored component of membrane	2.22E-03
22	GO:0009506: plasmodesma	3.02E-03
23	GO:0031012: extracellular matrix	3.37E-03
24	GO:0005576: extracellular region	3.48E-03
25	GO:0000312: plastid small ribosomal subunit	3.66E-03
26	GO:0005887: integral component of plasma membrane	4.28E-03
27	GO:0009654: photosystem II oxygen evolving complex	4.89E-03
28	GO:0022626: cytosolic ribosome	5.68E-03
29	GO:0005770: late endosome	7.34E-03
30	GO:0046658: anchored component of plasma membrane	7.96E-03
31	GO:0019898: extrinsic component of membrane	8.10E-03
32	GO:0005886: plasma membrane	9.42E-03
33	GO:0005778: peroxisomal membrane	1.01E-02
34	GO:0030529: intracellular ribonucleoprotein complex	1.10E-02
35	GO:0031969: chloroplast membrane	1.16E-02
36	GO:0022625: cytosolic large ribosomal subunit	1.22E-02
37	GO:0005773: vacuole	1.31E-02
38	GO:0019005: SCF ubiquitin ligase complex	1.33E-02
39	GO:0015934: large ribosomal subunit	1.47E-02
40	GO:0005774: vacuolar membrane	2.15E-02
41	GO:0000502: proteasome complex	2.32E-02
42	GO:0005777: peroxisome	3.48E-02
43	GO:0009705: plant-type vacuole membrane	4.40E-02