co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019447: D-cysteine catabolic process	0.00E+00
2	GO:1990592: protein K69-linked ufmylation	0.00E+00
3	GO:0070534: protein K63-linked ubiquitination	3.21E-07
4	GO:0006301: postreplication repair	8.71E-07
5	GO:0051259: protein oligomerization	9.94E-05
6	GO:0010222: stem vascular tissue pattern formation	1.37E-04
7	GO:0006555: methionine metabolic process	2.22E-04
8	GO:0019509: L-methionine salvage from methylthioadenosine	2.68E-04
9	GO:0030091: protein repair	3.65E-04
10	GO:0010039: response to iron ion	8.75E-04
11	GO:0010053: root epidermal cell differentiation	8.75E-04
12	GO:2000377: regulation of reactive oxygen species metabolic process	1.00E-03
13	GO:0051302: regulation of cell division	1.07E-03
14	GO:0055114: oxidation-reduction process	1.12E-03
15	GO:0009693: ethylene biosynthetic process	1.27E-03
16	GO:0006464: cellular protein modification process	2.04E-03
17	GO:0010286: heat acclimation	2.13E-03
18	GO:0007568: aging	3.03E-03
19	GO:0009631: cold acclimation	3.03E-03
20	GO:0034599: cellular response to oxidative stress	3.32E-03
21	GO:0006897: endocytosis	3.63E-03
22	GO:0006511: ubiquitin-dependent protein catabolic process	4.14E-03
23	GO:0009058: biosynthetic process	7.25E-03
24	GO:0015031: protein transport	7.82E-03
25	GO:0010150: leaf senescence	8.74E-03
26	GO:0046686: response to cadmium ion	9.59E-03
27	GO:0045454: cell redox homeostasis	1.57E-02
28	GO:0006886: intracellular protein transport	1.61E-02
29	GO:0006397: mRNA processing	1.88E-02
30	GO:0009908: flower development	2.55E-02
31	GO:0009416: response to light stimulus	2.74E-02
32	GO:0006457: protein folding	3.30E-02
33	GO:0006414: translational elongation	3.65E-02
34	GO:0006979: response to oxidative stress	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity	0.00E+00
2	GO:0019148: D-cysteine desulfhydrase activity	0.00E+00
3	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
4	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.29E-06
5	GO:0019707: protein-cysteine S-acyltransferase activity	1.39E-05
6	GO:0004733: pyridoxamine-phosphate oxidase activity	1.39E-05
7	GO:0030544: Hsp70 protein binding	1.39E-05
8	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.55E-05
9	GO:0004792: thiosulfate sulfurtransferase activity	9.94E-05
10	GO:0003730: mRNA 3'-UTR binding	2.68E-04
11	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.68E-04
12	GO:0031625: ubiquitin protein ligase binding	2.97E-04
13	GO:0004842: ubiquitin-protein transferase activity	1.18E-03
14	GO:0061630: ubiquitin protein ligase activity	1.26E-03
15	GO:0010181: FMN binding	1.64E-03
16	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.96E-03
17	GO:0050897: cobalt ion binding	3.03E-03
18	GO:0003746: translation elongation factor activity	3.22E-03
19	GO:0003824: catalytic activity	6.76E-03
20	GO:0008565: protein transporter activity	7.91E-03
21	GO:0016740: transferase activity	3.16E-02
22	GO:0005515: protein binding	4.11E-02
23	GO:0005509: calcium ion binding	4.28E-02
24	GO:0005506: iron ion binding	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0031372: UBC13-MMS2 complex	3.21E-07
2	GO:0030125: clathrin vesicle coat	5.78E-04
3	GO:0005905: clathrin-coated pit	1.13E-03
4	GO:0005802: trans-Golgi network	3.84E-02
5	GO:0005768: endosome	4.21E-02
6	GO:0005783: endoplasmic reticulum	4.31E-02
7	GO:0005829: cytosol	4.41E-02