GO Enrichment Analysis of Co-expressed Genes with
AT3G59640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 2 | GO:0009448: gamma-aminobutyric acid metabolic process | 0.00E+00 |
| 3 | GO:0006105: succinate metabolic process | 0.00E+00 |
| 4 | GO:0070482: response to oxygen levels | 0.00E+00 |
| 5 | GO:0006987: activation of signaling protein activity involved in unfolded protein response | 0.00E+00 |
| 6 | GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 0.00E+00 |
| 7 | GO:0000390: spliceosomal complex disassembly | 0.00E+00 |
| 8 | GO:0019484: beta-alanine catabolic process | 0.00E+00 |
| 9 | GO:0006333: chromatin assembly or disassembly | 5.92E-05 |
| 10 | GO:0006540: glutamate decarboxylation to succinate | 1.22E-04 |
| 11 | GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic | 1.22E-04 |
| 12 | GO:0035266: meristem growth | 1.22E-04 |
| 13 | GO:0009450: gamma-aminobutyric acid catabolic process | 1.22E-04 |
| 14 | GO:0007292: female gamete generation | 1.22E-04 |
| 15 | GO:0009865: pollen tube adhesion | 1.22E-04 |
| 16 | GO:0019441: tryptophan catabolic process to kynurenine | 2.82E-04 |
| 17 | GO:0010033: response to organic substance | 2.82E-04 |
| 18 | GO:0051788: response to misfolded protein | 2.82E-04 |
| 19 | GO:0045948: positive regulation of translational initiation | 2.82E-04 |
| 20 | GO:0009225: nucleotide-sugar metabolic process | 3.37E-04 |
| 21 | GO:0060968: regulation of gene silencing | 4.65E-04 |
| 22 | GO:0032012: regulation of ARF protein signal transduction | 4.65E-04 |
| 23 | GO:0071786: endoplasmic reticulum tubular network organization | 6.66E-04 |
| 24 | GO:0006020: inositol metabolic process | 6.66E-04 |
| 25 | GO:2001289: lipid X metabolic process | 6.66E-04 |
| 26 | GO:0015749: monosaccharide transport | 6.66E-04 |
| 27 | GO:0048544: recognition of pollen | 8.75E-04 |
| 28 | GO:0033320: UDP-D-xylose biosynthetic process | 8.84E-04 |
| 29 | GO:0006536: glutamate metabolic process | 8.84E-04 |
| 30 | GO:0042273: ribosomal large subunit biogenesis | 8.84E-04 |
| 31 | GO:0006891: intra-Golgi vesicle-mediated transport | 9.99E-04 |
| 32 | GO:0006635: fatty acid beta-oxidation | 9.99E-04 |
| 33 | GO:0007029: endoplasmic reticulum organization | 1.12E-03 |
| 34 | GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA | 1.12E-03 |
| 35 | GO:0006014: D-ribose metabolic process | 1.37E-03 |
| 36 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 1.37E-03 |
| 37 | GO:0048827: phyllome development | 1.37E-03 |
| 38 | GO:0016070: RNA metabolic process | 1.37E-03 |
| 39 | GO:0048232: male gamete generation | 1.37E-03 |
| 40 | GO:0043248: proteasome assembly | 1.37E-03 |
| 41 | GO:0042732: D-xylose metabolic process | 1.37E-03 |
| 42 | GO:0048280: vesicle fusion with Golgi apparatus | 1.64E-03 |
| 43 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.64E-03 |
| 44 | GO:0048573: photoperiodism, flowering | 1.67E-03 |
| 45 | GO:0006979: response to oxidative stress | 1.72E-03 |
| 46 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 1.92E-03 |
| 47 | GO:0098869: cellular oxidant detoxification | 1.92E-03 |
| 48 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.92E-03 |
| 49 | GO:0006605: protein targeting | 2.22E-03 |
| 50 | GO:0010078: maintenance of root meristem identity | 2.22E-03 |
| 51 | GO:0009061: anaerobic respiration | 2.22E-03 |
| 52 | GO:0016051: carbohydrate biosynthetic process | 2.33E-03 |
| 53 | GO:0030968: endoplasmic reticulum unfolded protein response | 2.54E-03 |
| 54 | GO:0006972: hyperosmotic response | 2.54E-03 |
| 55 | GO:0006367: transcription initiation from RNA polymerase II promoter | 2.54E-03 |
| 56 | GO:0046916: cellular transition metal ion homeostasis | 2.87E-03 |
| 57 | GO:0008202: steroid metabolic process | 3.21E-03 |
| 58 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 3.21E-03 |
| 59 | GO:0048829: root cap development | 3.57E-03 |
| 60 | GO:0010629: negative regulation of gene expression | 3.57E-03 |
| 61 | GO:0006896: Golgi to vacuole transport | 3.57E-03 |
| 62 | GO:0010015: root morphogenesis | 3.94E-03 |
| 63 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 4.32E-03 |
| 64 | GO:0071365: cellular response to auxin stimulus | 4.32E-03 |
| 65 | GO:0006886: intracellular protein transport | 4.34E-03 |
| 66 | GO:2000012: regulation of auxin polar transport | 4.71E-03 |
| 67 | GO:0010102: lateral root morphogenesis | 4.71E-03 |
| 68 | GO:0048367: shoot system development | 4.90E-03 |
| 69 | GO:0006541: glutamine metabolic process | 5.12E-03 |
| 70 | GO:0009933: meristem structural organization | 5.12E-03 |
| 71 | GO:0071732: cellular response to nitric oxide | 5.54E-03 |
| 72 | GO:0090351: seedling development | 5.54E-03 |
| 73 | GO:0005985: sucrose metabolic process | 5.54E-03 |
| 74 | GO:0006397: mRNA processing | 5.74E-03 |
| 75 | GO:0000162: tryptophan biosynthetic process | 5.98E-03 |
| 76 | GO:0009695: jasmonic acid biosynthetic process | 6.87E-03 |
| 77 | GO:0030433: ubiquitin-dependent ERAD pathway | 7.81E-03 |
| 78 | GO:0071369: cellular response to ethylene stimulus | 8.30E-03 |
| 79 | GO:0071215: cellular response to abscisic acid stimulus | 8.30E-03 |
| 80 | GO:0042147: retrograde transport, endosome to Golgi | 9.31E-03 |
| 81 | GO:0000413: protein peptidyl-prolyl isomerization | 9.83E-03 |
| 82 | GO:0010051: xylem and phloem pattern formation | 9.83E-03 |
| 83 | GO:0042631: cellular response to water deprivation | 9.83E-03 |
| 84 | GO:0042391: regulation of membrane potential | 9.83E-03 |
| 85 | GO:0046323: glucose import | 1.04E-02 |
| 86 | GO:0045489: pectin biosynthetic process | 1.04E-02 |
| 87 | GO:0010154: fruit development | 1.04E-02 |
| 88 | GO:0042752: regulation of circadian rhythm | 1.09E-02 |
| 89 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.10E-02 |
| 90 | GO:0019252: starch biosynthetic process | 1.15E-02 |
| 91 | GO:0006623: protein targeting to vacuole | 1.15E-02 |
| 92 | GO:0010183: pollen tube guidance | 1.15E-02 |
| 93 | GO:0009630: gravitropism | 1.26E-02 |
| 94 | GO:0071281: cellular response to iron ion | 1.32E-02 |
| 95 | GO:0046686: response to cadmium ion | 1.37E-02 |
| 96 | GO:0009651: response to salt stress | 1.40E-02 |
| 97 | GO:0010286: heat acclimation | 1.44E-02 |
| 98 | GO:0006904: vesicle docking involved in exocytosis | 1.44E-02 |
| 99 | GO:0001666: response to hypoxia | 1.56E-02 |
| 100 | GO:0009816: defense response to bacterium, incompatible interaction | 1.62E-02 |
| 101 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.75E-02 |
| 102 | GO:0016049: cell growth | 1.82E-02 |
| 103 | GO:0010311: lateral root formation | 1.95E-02 |
| 104 | GO:0010200: response to chitin | 1.97E-02 |
| 105 | GO:0006499: N-terminal protein myristoylation | 2.02E-02 |
| 106 | GO:0046777: protein autophosphorylation | 2.03E-02 |
| 107 | GO:0009631: cold acclimation | 2.09E-02 |
| 108 | GO:0045087: innate immune response | 2.23E-02 |
| 109 | GO:0006099: tricarboxylic acid cycle | 2.30E-02 |
| 110 | GO:0030001: metal ion transport | 2.44E-02 |
| 111 | GO:0006887: exocytosis | 2.52E-02 |
| 112 | GO:0006897: endocytosis | 2.52E-02 |
| 113 | GO:0009414: response to water deprivation | 2.67E-02 |
| 114 | GO:0009965: leaf morphogenesis | 2.90E-02 |
| 115 | GO:0048364: root development | 2.93E-02 |
| 116 | GO:0042538: hyperosmotic salinity response | 3.14E-02 |
| 117 | GO:0006857: oligopeptide transport | 3.46E-02 |
| 118 | GO:0009626: plant-type hypersensitive response | 3.89E-02 |
| 119 | GO:0018105: peptidyl-serine phosphorylation | 4.33E-02 |
| 120 | GO:0000398: mRNA splicing, via spliceosome | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005358: high-affinity hydrogen:glucose symporter activity | 0.00E+00 |
| 2 | GO:0034387: 4-aminobutyrate:pyruvate transaminase activity | 0.00E+00 |
| 3 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 4 | GO:1990446: U1 snRNP binding | 0.00E+00 |
| 5 | GO:0046522: S-methyl-5-thioribose kinase activity | 0.00E+00 |
| 6 | GO:0047787: delta4-3-oxosteroid 5beta-reductase activity | 0.00E+00 |
| 7 | GO:0008901: ferredoxin hydrogenase activity | 0.00E+00 |
| 8 | GO:0030527: structural constituent of chromatin | 6.65E-06 |
| 9 | GO:0009679: hexose:proton symporter activity | 1.22E-04 |
| 10 | GO:0035671: enone reductase activity | 1.22E-04 |
| 11 | GO:0008692: 3-hydroxybutyryl-CoA epimerase activity | 1.22E-04 |
| 12 | GO:0046870: cadmium ion binding | 1.22E-04 |
| 13 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.22E-04 |
| 14 | GO:0003867: 4-aminobutyrate transaminase activity | 1.22E-04 |
| 15 | GO:0050897: cobalt ion binding | 2.03E-04 |
| 16 | GO:0032791: lead ion binding | 2.82E-04 |
| 17 | GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity | 2.82E-04 |
| 18 | GO:0004061: arylformamidase activity | 2.82E-04 |
| 19 | GO:0008430: selenium binding | 4.65E-04 |
| 20 | GO:0005047: signal recognition particle binding | 4.65E-04 |
| 21 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 4.65E-04 |
| 22 | GO:0000339: RNA cap binding | 6.66E-04 |
| 23 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 6.66E-04 |
| 24 | GO:0004300: enoyl-CoA hydratase activity | 6.66E-04 |
| 25 | GO:0004108: citrate (Si)-synthase activity | 6.66E-04 |
| 26 | GO:0004834: tryptophan synthase activity | 8.84E-04 |
| 27 | GO:0004737: pyruvate decarboxylase activity | 8.84E-04 |
| 28 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.84E-04 |
| 29 | GO:0005086: ARF guanyl-nucleotide exchange factor activity | 8.84E-04 |
| 30 | GO:0050378: UDP-glucuronate 4-epimerase activity | 8.84E-04 |
| 31 | GO:0015145: monosaccharide transmembrane transporter activity | 1.12E-03 |
| 32 | GO:0035252: UDP-xylosyltransferase activity | 1.37E-03 |
| 33 | GO:0036402: proteasome-activating ATPase activity | 1.37E-03 |
| 34 | GO:0030976: thiamine pyrophosphate binding | 1.37E-03 |
| 35 | GO:0048040: UDP-glucuronate decarboxylase activity | 1.37E-03 |
| 36 | GO:0031369: translation initiation factor binding | 1.37E-03 |
| 37 | GO:0004602: glutathione peroxidase activity | 1.64E-03 |
| 38 | GO:0070403: NAD+ binding | 1.64E-03 |
| 39 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 1.64E-03 |
| 40 | GO:0004747: ribokinase activity | 1.64E-03 |
| 41 | GO:0003730: mRNA 3'-UTR binding | 1.64E-03 |
| 42 | GO:0005085: guanyl-nucleotide exchange factor activity | 1.92E-03 |
| 43 | GO:0016831: carboxy-lyase activity | 1.92E-03 |
| 44 | GO:0004869: cysteine-type endopeptidase inhibitor activity | 2.22E-03 |
| 45 | GO:0008865: fructokinase activity | 2.22E-03 |
| 46 | GO:0003729: mRNA binding | 3.42E-03 |
| 47 | GO:0015020: glucuronosyltransferase activity | 3.57E-03 |
| 48 | GO:0004521: endoribonuclease activity | 4.32E-03 |
| 49 | GO:0030552: cAMP binding | 5.54E-03 |
| 50 | GO:0030553: cGMP binding | 5.54E-03 |
| 51 | GO:0017025: TBP-class protein binding | 5.54E-03 |
| 52 | GO:0043424: protein histidine kinase binding | 6.87E-03 |
| 53 | GO:0005216: ion channel activity | 6.87E-03 |
| 54 | GO:0015144: carbohydrate transmembrane transporter activity | 8.54E-03 |
| 55 | GO:0003727: single-stranded RNA binding | 8.80E-03 |
| 56 | GO:0005351: sugar:proton symporter activity | 9.63E-03 |
| 57 | GO:0005249: voltage-gated potassium channel activity | 9.83E-03 |
| 58 | GO:0030551: cyclic nucleotide binding | 9.83E-03 |
| 59 | GO:0010181: FMN binding | 1.09E-02 |
| 60 | GO:0050662: coenzyme binding | 1.09E-02 |
| 61 | GO:0004872: receptor activity | 1.15E-02 |
| 62 | GO:0046982: protein heterodimerization activity | 1.50E-02 |
| 63 | GO:0003682: chromatin binding | 1.62E-02 |
| 64 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.69E-02 |
| 65 | GO:0008375: acetylglucosaminyltransferase activity | 1.69E-02 |
| 66 | GO:0004683: calmodulin-dependent protein kinase activity | 1.75E-02 |
| 67 | GO:0030247: polysaccharide binding | 1.75E-02 |
| 68 | GO:0005516: calmodulin binding | 1.89E-02 |
| 69 | GO:0003697: single-stranded DNA binding | 2.23E-02 |
| 70 | GO:0000149: SNARE binding | 2.37E-02 |
| 71 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.44E-02 |
| 72 | GO:0004722: protein serine/threonine phosphatase activity | 2.50E-02 |
| 73 | GO:0005484: SNAP receptor activity | 2.67E-02 |
| 74 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.98E-02 |
| 75 | GO:0003824: catalytic activity | 3.08E-02 |
| 76 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.30E-02 |
| 77 | GO:0008234: cysteine-type peptidase activity | 3.55E-02 |
| 78 | GO:0016301: kinase activity | 4.01E-02 |
| 79 | GO:0016887: ATPase activity | 4.33E-02 |
| 80 | GO:0016746: transferase activity, transferring acyl groups | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071008: U2-type post-mRNA release spliceosomal complex | 0.00E+00 |
| 2 | GO:0005785: signal recognition particle receptor complex | 0.00E+00 |
| 3 | GO:0031981: nuclear lumen | 0.00E+00 |
| 4 | GO:0005783: endoplasmic reticulum | 2.27E-04 |
| 5 | GO:0032777: Piccolo NuA4 histone acetyltransferase complex | 2.82E-04 |
| 6 | GO:0005829: cytosol | 3.46E-04 |
| 7 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 4.65E-04 |
| 8 | GO:0005794: Golgi apparatus | 4.78E-04 |
| 9 | GO:0071782: endoplasmic reticulum tubular network | 6.66E-04 |
| 10 | GO:0000323: lytic vacuole | 6.66E-04 |
| 11 | GO:0005886: plasma membrane | 1.04E-03 |
| 12 | GO:0000785: chromatin | 1.06E-03 |
| 13 | GO:0030140: trans-Golgi network transport vesicle | 1.37E-03 |
| 14 | GO:0000932: P-body | 1.42E-03 |
| 15 | GO:0031597: cytosolic proteasome complex | 1.64E-03 |
| 16 | GO:0016363: nuclear matrix | 1.64E-03 |
| 17 | GO:0031595: nuclear proteasome complex | 1.92E-03 |
| 18 | GO:0030687: preribosome, large subunit precursor | 1.92E-03 |
| 19 | GO:0012507: ER to Golgi transport vesicle membrane | 2.22E-03 |
| 20 | GO:0030131: clathrin adaptor complex | 2.22E-03 |
| 21 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 2.22E-03 |
| 22 | GO:0000786: nucleosome | 2.23E-03 |
| 23 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.54E-03 |
| 24 | GO:0031902: late endosome membrane | 2.76E-03 |
| 25 | GO:0016604: nuclear body | 3.21E-03 |
| 26 | GO:0008540: proteasome regulatory particle, base subcomplex | 3.21E-03 |
| 27 | GO:0030125: clathrin vesicle coat | 3.57E-03 |
| 28 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.32E-03 |
| 29 | GO:0005802: trans-Golgi network | 4.91E-03 |
| 30 | GO:0005795: Golgi stack | 5.54E-03 |
| 31 | GO:0005905: clathrin-coated pit | 7.34E-03 |
| 32 | GO:0005770: late endosome | 1.04E-02 |
| 33 | GO:0031965: nuclear membrane | 1.15E-02 |
| 34 | GO:0000145: exocyst | 1.26E-02 |
| 35 | GO:0005789: endoplasmic reticulum membrane | 1.33E-02 |
| 36 | GO:0005777: peroxisome | 1.34E-02 |
| 37 | GO:0016020: membrane | 1.35E-02 |
| 38 | GO:0032580: Golgi cisterna membrane | 1.38E-02 |
| 39 | GO:0000325: plant-type vacuole | 2.09E-02 |
| 40 | GO:0005768: endosome | 2.41E-02 |
| 41 | GO:0031201: SNARE complex | 2.52E-02 |
| 42 | GO:0000502: proteasome complex | 3.30E-02 |
| 43 | GO:0000139: Golgi membrane | 4.00E-02 |
| 44 | GO:0016021: integral component of membrane | 4.12E-02 |
| 45 | GO:0005774: vacuolar membrane | 4.44E-02 |
| 46 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.51E-02 |