Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045048: protein insertion into ER membrane0.00E+00
2GO:0006480: N-terminal protein amino acid methylation0.00E+00
3GO:0032012: regulation of ARF protein signal transduction2.35E-08
4GO:1990641: response to iron ion starvation7.41E-06
5GO:0006101: citrate metabolic process2.00E-05
6GO:0048209: regulation of vesicle targeting, to, from or within Golgi2.00E-05
7GO:0001736: establishment of planar polarity2.00E-05
8GO:0032509: endosome transport via multivesicular body sorting pathway2.00E-05
9GO:0006517: protein deglycosylation3.67E-05
10GO:0006013: mannose metabolic process3.67E-05
11GO:0010587: miRNA catabolic process5.65E-05
12GO:0009165: nucleotide biosynthetic process7.90E-05
13GO:0045723: positive regulation of fatty acid biosynthetic process7.90E-05
14GO:1990937: xylan acetylation7.90E-05
15GO:0045491: xylan metabolic process1.30E-04
16GO:0009942: longitudinal axis specification1.59E-04
17GO:0000911: cytokinesis by cell plate formation1.59E-04
18GO:0006102: isocitrate metabolic process2.20E-04
19GO:0007155: cell adhesion2.20E-04
20GO:0006491: N-glycan processing2.20E-04
21GO:0009880: embryonic pattern specification2.52E-04
22GO:0016485: protein processing3.90E-04
23GO:0048765: root hair cell differentiation3.90E-04
24GO:0006820: anion transport4.26E-04
25GO:0010540: basipetal auxin transport5.02E-04
26GO:0016192: vesicle-mediated transport6.12E-04
27GO:0006487: protein N-linked glycosylation6.20E-04
28GO:0009116: nucleoside metabolic process6.20E-04
29GO:0046777: protein autophosphorylation6.22E-04
30GO:0045492: xylan biosynthetic process8.32E-04
31GO:0009561: megagametogenesis8.32E-04
32GO:0010087: phloem or xylem histogenesis9.19E-04
33GO:0006623: protein targeting to vacuole1.06E-03
34GO:0009911: positive regulation of flower development1.40E-03
35GO:0048573: photoperiodism, flowering1.56E-03
36GO:0048767: root hair elongation1.72E-03
37GO:0010311: lateral root formation1.72E-03
38GO:0009834: plant-type secondary cell wall biogenesis1.78E-03
39GO:0006099: tricarboxylic acid cycle2.01E-03
40GO:0006897: endocytosis2.19E-03
41GO:0042538: hyperosmotic salinity response2.70E-03
42GO:0006364: rRNA processing2.82E-03
43GO:0009909: regulation of flower development3.03E-03
44GO:0015031: protein transport3.67E-03
45GO:0010228: vegetative to reproductive phase transition of meristem5.37E-03
46GO:0006470: protein dephosphorylation5.71E-03
47GO:0009826: unidimensional cell growth6.86E-03
48GO:0009751: response to salicylic acid1.06E-02
49GO:0006397: mRNA processing1.11E-02
50GO:0008152: metabolic process1.15E-02
51GO:0035556: intracellular signal transduction1.68E-02
52GO:0006468: protein phosphorylation2.24E-02
53GO:0071555: cell wall organization2.67E-02
54GO:0006810: transport3.51E-02
55GO:0009793: embryo development ending in seed dormancy4.85E-02
RankGO TermAdjusted P value
1GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.00E+00
2GO:0010292: GTP:GDP antiporter activity0.00E+00
3GO:0005086: ARF guanyl-nucleotide exchange factor activity1.14E-07
4GO:0004534: 5'-3' exoribonuclease activity2.00E-05
5GO:0003994: aconitate hydratase activity2.00E-05
6GO:0004749: ribose phosphate diphosphokinase activity5.65E-05
7GO:0048027: mRNA 5'-UTR binding5.65E-05
8GO:0002020: protease binding1.04E-04
9GO:0004559: alpha-mannosidase activity1.59E-04
10GO:0005085: guanyl-nucleotide exchange factor activity1.88E-04
11GO:0008135: translation factor activity, RNA binding2.52E-04
12GO:0031490: chromatin DNA binding3.19E-04
13GO:0042802: identical protein binding3.91E-04
14GO:0004175: endopeptidase activity5.02E-04
15GO:0003713: transcription coactivator activity9.64E-04
16GO:0030276: clathrin binding9.64E-04
17GO:0016301: kinase activity2.03E-03
18GO:0051539: 4 iron, 4 sulfur cluster binding2.13E-03
19GO:0043621: protein self-association2.44E-03
20GO:0005515: protein binding2.78E-03
21GO:0004252: serine-type endopeptidase activity4.49E-03
22GO:0000287: magnesium ion binding6.95E-03
23GO:0003682: chromatin binding7.32E-03
24GO:0042803: protein homodimerization activity9.58E-03
25GO:0004722: protein serine/threonine phosphatase activity9.90E-03
26GO:0004674: protein serine/threonine kinase activity1.42E-02
27GO:0016887: ATPase activity1.46E-02
28GO:0008270: zinc ion binding1.75E-02
29GO:0016740: transferase activity1.86E-02
30GO:0030246: carbohydrate binding1.99E-02
31GO:0005507: copper ion binding2.07E-02
32GO:0016491: oxidoreductase activity3.25E-02
33GO:0004672: protein kinase activity3.51E-02
RankGO TermAdjusted P value
1GO:0032588: trans-Golgi network membrane1.30E-04
2GO:0005829: cytosol1.54E-04
3GO:0005884: actin filament3.90E-04
4GO:0030136: clathrin-coated vesicle8.75E-04
5GO:0005770: late endosome9.64E-04
6GO:0005802: trans-Golgi network2.30E-03
7GO:0005768: endosome2.61E-03
8GO:0010008: endosome membrane3.23E-03
9GO:0000139: Golgi membrane3.91E-03
10GO:0005794: Golgi apparatus1.13E-02
11GO:0005777: peroxisome1.78E-02
12GO:0009579: thylakoid1.83E-02
13GO:0005886: plasma membrane4.97E-02
Gene type



Gene DE type