GO Enrichment Analysis of Co-expressed Genes with
AT3G58830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009946: proximal/distal axis specification | 0.00E+00 |
| 2 | GO:0051881: regulation of mitochondrial membrane potential | 0.00E+00 |
| 3 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0009249: protein lipoylation | 0.00E+00 |
| 5 | GO:0042407: cristae formation | 0.00E+00 |
| 6 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 7 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 8 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 9.01E-08 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 6.85E-07 |
| 11 | GO:0010020: chloroplast fission | 7.57E-06 |
| 12 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.15E-05 |
| 13 | GO:0006546: glycine catabolic process | 1.15E-05 |
| 14 | GO:0016117: carotenoid biosynthetic process | 3.28E-05 |
| 15 | GO:0032544: plastid translation | 9.00E-05 |
| 16 | GO:0006438: valyl-tRNA aminoacylation | 1.16E-04 |
| 17 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.86E-04 |
| 18 | GO:0006415: translational termination | 1.86E-04 |
| 19 | GO:0000272: polysaccharide catabolic process | 1.86E-04 |
| 20 | GO:0046686: response to cadmium ion | 1.96E-04 |
| 21 | GO:0009767: photosynthetic electron transport chain | 2.47E-04 |
| 22 | GO:0043039: tRNA aminoacylation | 2.69E-04 |
| 23 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.69E-04 |
| 24 | GO:0009658: chloroplast organization | 3.63E-04 |
| 25 | GO:0006418: tRNA aminoacylation for protein translation | 4.32E-04 |
| 26 | GO:0006696: ergosterol biosynthetic process | 4.45E-04 |
| 27 | GO:0010338: leaf formation | 4.45E-04 |
| 28 | GO:0006096: glycolytic process | 5.40E-04 |
| 29 | GO:0043572: plastid fission | 6.38E-04 |
| 30 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.38E-04 |
| 31 | GO:0010239: chloroplast mRNA processing | 6.38E-04 |
| 32 | GO:0016556: mRNA modification | 6.38E-04 |
| 33 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.38E-04 |
| 34 | GO:0033014: tetrapyrrole biosynthetic process | 6.38E-04 |
| 35 | GO:0006810: transport | 7.52E-04 |
| 36 | GO:0006542: glutamine biosynthetic process | 8.47E-04 |
| 37 | GO:0006479: protein methylation | 8.47E-04 |
| 38 | GO:0019676: ammonia assimilation cycle | 8.47E-04 |
| 39 | GO:0045088: regulation of innate immune response | 8.47E-04 |
| 40 | GO:0045727: positive regulation of translation | 8.47E-04 |
| 41 | GO:0009902: chloroplast relocation | 8.47E-04 |
| 42 | GO:0009107: lipoate biosynthetic process | 1.07E-03 |
| 43 | GO:0016123: xanthophyll biosynthetic process | 1.07E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.07E-03 |
| 45 | GO:0010190: cytochrome b6f complex assembly | 1.31E-03 |
| 46 | GO:0042026: protein refolding | 1.56E-03 |
| 47 | GO:0009094: L-phenylalanine biosynthetic process | 1.56E-03 |
| 48 | GO:0006458: 'de novo' protein folding | 1.56E-03 |
| 49 | GO:0017148: negative regulation of translation | 1.56E-03 |
| 50 | GO:0009735: response to cytokinin | 1.89E-03 |
| 51 | GO:0000105: histidine biosynthetic process | 2.13E-03 |
| 52 | GO:0005978: glycogen biosynthetic process | 2.13E-03 |
| 53 | GO:0009853: photorespiration | 2.18E-03 |
| 54 | GO:0048193: Golgi vesicle transport | 2.43E-03 |
| 55 | GO:0009657: plastid organization | 2.43E-03 |
| 56 | GO:0009409: response to cold | 2.57E-03 |
| 57 | GO:0006783: heme biosynthetic process | 2.74E-03 |
| 58 | GO:0009744: response to sucrose | 2.80E-03 |
| 59 | GO:0008356: asymmetric cell division | 3.07E-03 |
| 60 | GO:0043067: regulation of programmed cell death | 3.07E-03 |
| 61 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.07E-03 |
| 62 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.18E-03 |
| 63 | GO:0051555: flavonol biosynthetic process | 3.41E-03 |
| 64 | GO:0009773: photosynthetic electron transport in photosystem I | 3.76E-03 |
| 65 | GO:0019684: photosynthesis, light reaction | 3.76E-03 |
| 66 | GO:0045037: protein import into chloroplast stroma | 4.13E-03 |
| 67 | GO:0006006: glucose metabolic process | 4.50E-03 |
| 68 | GO:0090351: seedling development | 5.29E-03 |
| 69 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.12E-03 |
| 70 | GO:0007017: microtubule-based process | 6.56E-03 |
| 71 | GO:0061077: chaperone-mediated protein folding | 7.00E-03 |
| 72 | GO:0080092: regulation of pollen tube growth | 7.46E-03 |
| 73 | GO:0006730: one-carbon metabolic process | 7.46E-03 |
| 74 | GO:0009790: embryo development | 7.79E-03 |
| 75 | GO:0006633: fatty acid biosynthetic process | 8.39E-03 |
| 76 | GO:0042631: cellular response to water deprivation | 9.38E-03 |
| 77 | GO:0010197: polar nucleus fusion | 9.89E-03 |
| 78 | GO:0009416: response to light stimulus | 1.04E-02 |
| 79 | GO:0019252: starch biosynthetic process | 1.09E-02 |
| 80 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.15E-02 |
| 81 | GO:0009615: response to virus | 1.49E-02 |
| 82 | GO:0010027: thylakoid membrane organization | 1.49E-02 |
| 83 | GO:0048573: photoperiodism, flowering | 1.67E-02 |
| 84 | GO:0009817: defense response to fungus, incompatible interaction | 1.80E-02 |
| 85 | GO:0018298: protein-chromophore linkage | 1.80E-02 |
| 86 | GO:0009407: toxin catabolic process | 1.92E-02 |
| 87 | GO:0007568: aging | 1.99E-02 |
| 88 | GO:0009637: response to blue light | 2.12E-02 |
| 89 | GO:0009793: embryo development ending in seed dormancy | 2.24E-02 |
| 90 | GO:0006839: mitochondrial transport | 2.33E-02 |
| 91 | GO:0042742: defense response to bacterium | 2.52E-02 |
| 92 | GO:0006629: lipid metabolic process | 2.62E-02 |
| 93 | GO:0009636: response to toxic substance | 2.76E-02 |
| 94 | GO:0009965: leaf morphogenesis | 2.76E-02 |
| 95 | GO:0008152: metabolic process | 2.89E-02 |
| 96 | GO:0006364: rRNA processing | 3.15E-02 |
| 97 | GO:0006396: RNA processing | 4.13E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 2 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 7 | GO:0004618: phosphoglycerate kinase activity | 6.85E-07 |
| 8 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.10E-06 |
| 9 | GO:0016149: translation release factor activity, codon specific | 6.10E-06 |
| 10 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.06E-05 |
| 11 | GO:0003747: translation release factor activity | 1.11E-04 |
| 12 | GO:0004400: histidinol-phosphate transaminase activity | 1.16E-04 |
| 13 | GO:0004831: tyrosine-tRNA ligase activity | 1.16E-04 |
| 14 | GO:0004325: ferrochelatase activity | 1.16E-04 |
| 15 | GO:0051996: squalene synthase activity | 1.16E-04 |
| 16 | GO:0010313: phytochrome binding | 1.16E-04 |
| 17 | GO:0004832: valine-tRNA ligase activity | 1.16E-04 |
| 18 | GO:0031072: heat shock protein binding | 2.47E-04 |
| 19 | GO:0010291: carotene beta-ring hydroxylase activity | 2.69E-04 |
| 20 | GO:0017118: lipoyltransferase activity | 2.69E-04 |
| 21 | GO:0010297: heteropolysaccharide binding | 2.69E-04 |
| 22 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.69E-04 |
| 23 | GO:0016415: octanoyltransferase activity | 2.69E-04 |
| 24 | GO:0004047: aminomethyltransferase activity | 2.69E-04 |
| 25 | GO:0004312: fatty acid synthase activity | 2.69E-04 |
| 26 | GO:0004817: cysteine-tRNA ligase activity | 2.69E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.69E-04 |
| 28 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.69E-04 |
| 29 | GO:0005528: FK506 binding | 3.91E-04 |
| 30 | GO:0030267: glyoxylate reductase (NADP) activity | 4.45E-04 |
| 31 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.45E-04 |
| 32 | GO:0003913: DNA photolyase activity | 4.45E-04 |
| 33 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.45E-04 |
| 34 | GO:0004751: ribose-5-phosphate isomerase activity | 4.45E-04 |
| 35 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 6.38E-04 |
| 36 | GO:0008276: protein methyltransferase activity | 6.38E-04 |
| 37 | GO:0048027: mRNA 5'-UTR binding | 6.38E-04 |
| 38 | GO:0004812: aminoacyl-tRNA ligase activity | 6.61E-04 |
| 39 | GO:0051082: unfolded protein binding | 6.82E-04 |
| 40 | GO:0047769: arogenate dehydratase activity | 8.47E-04 |
| 41 | GO:0004664: prephenate dehydratase activity | 8.47E-04 |
| 42 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.47E-04 |
| 43 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 8.47E-04 |
| 44 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 8.47E-04 |
| 45 | GO:0004356: glutamate-ammonia ligase activity | 1.07E-03 |
| 46 | GO:0008374: O-acyltransferase activity | 1.07E-03 |
| 47 | GO:0016597: amino acid binding | 1.26E-03 |
| 48 | GO:0080030: methyl indole-3-acetate esterase activity | 1.31E-03 |
| 49 | GO:0102229: amylopectin maltohydrolase activity | 1.31E-03 |
| 50 | GO:0016161: beta-amylase activity | 1.56E-03 |
| 51 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.56E-03 |
| 52 | GO:0009881: photoreceptor activity | 1.84E-03 |
| 53 | GO:0043295: glutathione binding | 1.84E-03 |
| 54 | GO:0005198: structural molecule activity | 3.14E-03 |
| 55 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.26E-03 |
| 56 | GO:0051287: NAD binding | 3.38E-03 |
| 57 | GO:0044183: protein binding involved in protein folding | 3.76E-03 |
| 58 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.76E-03 |
| 59 | GO:0004565: beta-galactosidase activity | 4.50E-03 |
| 60 | GO:0008081: phosphoric diester hydrolase activity | 4.50E-03 |
| 61 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.58E-03 |
| 62 | GO:0022857: transmembrane transporter activity | 5.02E-03 |
| 63 | GO:0019843: rRNA binding | 6.67E-03 |
| 64 | GO:0003756: protein disulfide isomerase activity | 8.40E-03 |
| 65 | GO:0008194: UDP-glycosyltransferase activity | 1.03E-02 |
| 66 | GO:0050662: coenzyme binding | 1.04E-02 |
| 67 | GO:0004672: protein kinase activity | 1.13E-02 |
| 68 | GO:0048038: quinone binding | 1.15E-02 |
| 69 | GO:0004518: nuclease activity | 1.20E-02 |
| 70 | GO:0008483: transaminase activity | 1.37E-02 |
| 71 | GO:0050897: cobalt ion binding | 1.99E-02 |
| 72 | GO:0005524: ATP binding | 2.03E-02 |
| 73 | GO:0050661: NADP binding | 2.33E-02 |
| 74 | GO:0004364: glutathione transferase activity | 2.47E-02 |
| 75 | GO:0043621: protein self-association | 2.69E-02 |
| 76 | GO:0003824: catalytic activity | 2.84E-02 |
| 77 | GO:0004519: endonuclease activity | 2.85E-02 |
| 78 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.79E-02 |
| 79 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.79E-02 |
| 80 | GO:0016758: transferase activity, transferring hexosyl groups | 4.65E-02 |
| 81 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0030931: heterotetrameric ADPG pyrophosphorylase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.29E-28 |
| 4 | GO:0009570: chloroplast stroma | 1.54E-20 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 7.57E-13 |
| 6 | GO:0009941: chloroplast envelope | 1.50E-11 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.56E-06 |
| 8 | GO:0010319: stromule | 2.88E-06 |
| 9 | GO:0005960: glycine cleavage complex | 6.10E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 6.38E-06 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.59E-05 |
| 12 | GO:0031969: chloroplast membrane | 6.40E-05 |
| 13 | GO:0009579: thylakoid | 1.06E-04 |
| 14 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.69E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 2.81E-04 |
| 16 | GO:0048046: apoplast | 3.89E-04 |
| 17 | GO:0009534: chloroplast thylakoid | 6.14E-04 |
| 18 | GO:0010287: plastoglobule | 8.44E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 8.79E-04 |
| 20 | GO:0055035: plastid thylakoid membrane | 1.07E-03 |
| 21 | GO:0000793: condensed chromosome | 1.31E-03 |
| 22 | GO:0009539: photosystem II reaction center | 2.43E-03 |
| 23 | GO:0016324: apical plasma membrane | 3.41E-03 |
| 24 | GO:0009508: plastid chromosome | 4.50E-03 |
| 25 | GO:0043231: intracellular membrane-bounded organelle | 5.65E-03 |
| 26 | GO:0005759: mitochondrial matrix | 8.39E-03 |
| 27 | GO:0009536: plastid | 8.62E-03 |
| 28 | GO:0005778: peroxisomal membrane | 1.37E-02 |
| 29 | GO:0009295: nucleoid | 1.37E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 1.80E-02 |
| 31 | GO:0031977: thylakoid lumen | 2.40E-02 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 3.63E-02 |
| 33 | GO:0009706: chloroplast inner membrane | 4.04E-02 |
| 34 | GO:0022626: cytosolic ribosome | 4.44E-02 |
| 35 | GO:0005623: cell | 4.83E-02 |