co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G58700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072321: chaperone-mediated protein transport	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0044843: cell cycle G1/S phase transition	0.00E+00
4	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
5	GO:0071731: response to nitric oxide	0.00E+00
6	GO:1990258: histone glutamine methylation	0.00E+00
7	GO:0006412: translation	1.17E-49
8	GO:0042254: ribosome biogenesis	6.52E-15
9	GO:0000027: ribosomal large subunit assembly	2.38E-12
10	GO:0006364: rRNA processing	6.65E-09
11	GO:0009955: adaxial/abaxial pattern specification	1.04E-07
12	GO:0002181: cytoplasmic translation	1.22E-06
13	GO:0006626: protein targeting to mitochondrion	2.27E-06
14	GO:0031167: rRNA methylation	9.33E-06
15	GO:0009735: response to cytokinin	1.17E-05
16	GO:0000028: ribosomal small subunit assembly	3.68E-05
17	GO:0001510: RNA methylation	4.70E-05
18	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	7.58E-05
19	GO:0010162: seed dormancy process	8.54E-05
20	GO:0009220: pyrimidine ribonucleotide biosynthetic process	1.81E-04
21	GO:0048569: post-embryonic animal organ development	1.81E-04
22	GO:0055129: L-proline biosynthetic process	1.81E-04
23	GO:0009944: polarity specification of adaxial/abaxial axis	2.20E-04
24	GO:0007005: mitochondrion organization	2.96E-04
25	GO:1902626: assembly of large subunit precursor of preribosome	3.05E-04
26	GO:0090506: axillary shoot meristem initiation	3.05E-04
27	GO:0045039: protein import into mitochondrial inner membrane	3.05E-04
28	GO:0008652: cellular amino acid biosynthetic process	3.05E-04
29	GO:0009294: DNA mediated transformation	3.24E-04
30	GO:0008033: tRNA processing	4.12E-04
31	GO:0044205: 'de novo' UMP biosynthetic process	5.87E-04
32	GO:2000032: regulation of secondary shoot formation	5.87E-04
33	GO:0042274: ribosomal small subunit biogenesis	5.87E-04
34	GO:0071493: cellular response to UV-B	7.44E-04
35	GO:0006561: proline biosynthetic process	9.07E-04
36	GO:0000470: maturation of LSU-rRNA	9.07E-04
37	GO:0009088: threonine biosynthetic process	1.08E-03
38	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.26E-03
39	GO:0008283: cell proliferation	1.60E-03
40	GO:0001558: regulation of cell growth	1.66E-03
41	GO:0009965: leaf morphogenesis	1.80E-03
42	GO:0009089: lysine biosynthetic process via diaminopimelate	2.56E-03
43	GO:0010015: root morphogenesis	2.56E-03
44	GO:0006913: nucleocytoplasmic transport	2.56E-03
45	GO:0006820: anion transport	2.80E-03
46	GO:0010229: inflorescence development	3.06E-03
47	GO:0010102: lateral root morphogenesis	3.06E-03
48	GO:0048467: gynoecium development	3.32E-03
49	GO:0030150: protein import into mitochondrial matrix	4.15E-03
50	GO:0051302: regulation of cell division	4.43E-03
51	GO:0009651: response to salt stress	4.57E-03
52	GO:0006413: translational initiation	4.86E-03
53	GO:0046686: response to cadmium ion	5.18E-03
54	GO:0040007: growth	5.34E-03
55	GO:0010501: RNA secondary structure unwinding	6.31E-03
56	GO:0000413: protein peptidyl-prolyl isomerization	6.31E-03
57	GO:0006520: cellular amino acid metabolic process	6.64E-03
58	GO:0009791: post-embryonic development	7.34E-03
59	GO:0032502: developmental process	8.05E-03
60	GO:0006414: translational elongation	8.30E-03
61	GO:0010252: auxin homeostasis	8.79E-03
62	GO:0009793: embryo development ending in seed dormancy	9.42E-03
63	GO:0016049: cell growth	1.16E-02
64	GO:0006811: ion transport	1.28E-02
65	GO:0048527: lateral root development	1.33E-02
66	GO:0010043: response to zinc ion	1.33E-02
67	GO:0000154: rRNA modification	1.84E-02
68	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.94E-02
69	GO:0009734: auxin-activated signaling pathway	2.09E-02
70	GO:0016569: covalent chromatin modification	2.58E-02
71	GO:0016036: cellular response to phosphate starvation	3.78E-02
72	GO:0009451: RNA modification	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0004070: aspartate carbamoyltransferase activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0004164: diphthine synthase activity	0.00E+00
5	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	4.49E-62
7	GO:0003729: mRNA binding	8.49E-15
8	GO:0030515: snoRNA binding	1.72E-07
9	GO:0008649: rRNA methyltransferase activity	1.22E-06
10	GO:0008097: 5S rRNA binding	2.91E-06
11	GO:0003723: RNA binding	5.43E-06
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.55E-05
13	GO:0016743: carboxyl- or carbamoyltransferase activity	1.81E-04
14	GO:0004407: histone deacetylase activity	2.20E-04
15	GO:0070180: large ribosomal subunit rRNA binding	3.05E-04
16	GO:0004072: aspartate kinase activity	4.41E-04
17	GO:0016597: amino acid binding	7.36E-04
18	GO:0004017: adenylate kinase activity	1.08E-03
19	GO:0008235: metalloexopeptidase activity	1.26E-03
20	GO:0015288: porin activity	1.46E-03
21	GO:0008308: voltage-gated anion channel activity	1.66E-03
22	GO:0015266: protein channel activity	3.06E-03
23	GO:0019843: rRNA binding	3.79E-03
24	GO:0003743: translation initiation factor activity	6.09E-03
25	GO:0004004: ATP-dependent RNA helicase activity	1.12E-02
26	GO:0003746: translation elongation factor activity	1.42E-02
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.89E-02
28	GO:0000166: nucleotide binding	2.63E-02
29	GO:0008026: ATP-dependent helicase activity	2.81E-02
30	GO:0008565: protein transporter activity	3.59E-02
31	GO:0005507: copper ion binding	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0022626: cytosolic ribosome	5.24E-55
3	GO:0022625: cytosolic large ribosomal subunit	7.86E-48
4	GO:0005840: ribosome	2.91E-41
5	GO:0005730: nucleolus	2.01E-36
6	GO:0005829: cytosol	4.06E-20
7	GO:0022627: cytosolic small ribosomal subunit	4.07E-17
8	GO:0015934: large ribosomal subunit	9.65E-16
9	GO:0009506: plasmodesma	2.01E-14
10	GO:0005737: cytoplasm	2.06E-13
11	GO:0005773: vacuole	6.38E-11
12	GO:0016020: membrane	5.29E-09
13	GO:0005774: vacuolar membrane	9.43E-09
14	GO:0005618: cell wall	1.98E-08
15	GO:0031428: box C/D snoRNP complex	5.87E-08
16	GO:0032040: small-subunit processome	1.79E-06
17	GO:0015030: Cajal body	7.12E-05
18	GO:0005852: eukaryotic translation initiation factor 3 complex	1.01E-04
19	GO:0005758: mitochondrial intermembrane space	2.20E-04
20	GO:0046930: pore complex	1.66E-03
21	GO:0005742: mitochondrial outer membrane translocase complex	1.66E-03
22	GO:0005743: mitochondrial inner membrane	2.21E-03
23	GO:0009507: chloroplast	2.88E-03
24	GO:0005741: mitochondrial outer membrane	4.73E-03
25	GO:0015935: small ribosomal subunit	4.73E-03
26	GO:0016592: mediator complex	8.05E-03
27	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.84E-03
28	GO:0030529: intracellular ribonucleoprotein complex	9.95E-03
29	GO:0005886: plasma membrane	1.95E-02
30	GO:0005747: mitochondrial respiratory chain complex I	2.42E-02