co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G58560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030581: symbiont intracellular protein transport in host	0.00E+00
2	GO:0016236: macroautophagy	0.00E+00
3	GO:0080034: host response to induction by symbiont of tumor, nodule or growth in host	0.00E+00
4	GO:0030242: pexophagy	7.41E-06
5	GO:0006422: aspartyl-tRNA aminoacylation	7.41E-06
6	GO:0009660: amyloplast organization	2.00E-05
7	GO:0006623: protein targeting to vacuole	2.11E-05
8	GO:0007032: endosome organization	3.67E-05
9	GO:0045324: late endosome to vacuole transport	7.90E-05
10	GO:0042594: response to starvation	7.90E-05
11	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	7.90E-05
12	GO:0010363: regulation of plant-type hypersensitive response	7.90E-05
13	GO:0000380: alternative mRNA splicing, via spliceosome	1.04E-04
14	GO:0051603: proteolysis involved in cellular protein catabolic process	1.25E-04
15	GO:0009959: negative gravitropism	1.30E-04
16	GO:0006096: glycolytic process	1.44E-04
17	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.52E-04
18	GO:0048589: developmental growth	2.85E-04
19	GO:0006607: NLS-bearing protein import into nucleus	2.85E-04
20	GO:0006098: pentose-phosphate shunt	2.85E-04
21	GO:0055046: microgametogenesis	4.64E-04
22	GO:0006094: gluconeogenesis	4.64E-04
23	GO:0006807: nitrogen compound metabolic process	4.64E-04
24	GO:0007033: vacuole organization	5.40E-04
25	GO:0009561: megagametogenesis	8.32E-04
26	GO:0015991: ATP hydrolysis coupled proton transport	9.19E-04
27	GO:0008360: regulation of cell shape	9.64E-04
28	GO:0009556: microsporogenesis	1.06E-03
29	GO:0016579: protein deubiquitination	1.35E-03
30	GO:0009555: pollen development	1.45E-03
31	GO:0048767: root hair elongation	1.72E-03
32	GO:0010043: response to zinc ion	1.84E-03
33	GO:0006511: ubiquitin-dependent protein catabolic process	1.96E-03
34	GO:0006897: endocytosis	2.19E-03
35	GO:0006631: fatty acid metabolic process	2.19E-03
36	GO:0000209: protein polyubiquitination	2.38E-03
37	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.63E-03
38	GO:0009846: pollen germination	2.70E-03
39	GO:0006417: regulation of translation	3.03E-03
40	GO:0016569: covalent chromatin modification	3.44E-03
41	GO:0051726: regulation of cell cycle	3.73E-03
42	GO:0000398: mRNA splicing, via spliceosome	3.95E-03
43	GO:0009058: biosynthetic process	4.33E-03
44	GO:0046686: response to cadmium ion	4.49E-03
45	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.63E-03
46	GO:0006886: intracellular protein transport	9.48E-03
47	GO:0006397: mRNA processing	1.11E-02
48	GO:0008152: metabolic process	1.15E-02
49	GO:0051301: cell division	1.71E-02
50	GO:0006457: protein folding	1.94E-02
51	GO:0071555: cell wall organization	2.67E-02
52	GO:0006979: response to oxidative stress	2.68E-02
53	GO:0009793: embryo development ending in seed dormancy	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0030623: U5 snRNA binding	7.41E-06
2	GO:0004815: aspartate-tRNA ligase activity	7.41E-06
3	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.65E-05
4	GO:0003995: acyl-CoA dehydrogenase activity	7.90E-05
5	GO:0017070: U6 snRNA binding	1.04E-04
6	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.30E-04
7	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.30E-04
8	GO:0004332: fructose-bisphosphate aldolase activity	1.30E-04
9	GO:0003843: 1,3-beta-D-glucan synthase activity	2.52E-04
10	GO:0008139: nuclear localization sequence binding	4.64E-04
11	GO:0004298: threonine-type endopeptidase activity	7.02E-04
12	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.02E-04
13	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.10E-03
14	GO:0051213: dioxygenase activity	1.40E-03
15	GO:0016746: transferase activity, transferring acyl groups	3.66E-03
16	GO:0030170: pyridoxal phosphate binding	4.49E-03
17	GO:0004252: serine-type endopeptidase activity	4.49E-03
18	GO:0008565: protein transporter activity	4.72E-03
19	GO:0050660: flavin adenine dinucleotide binding	7.79E-03
20	GO:0008233: peptidase activity	8.08E-03
21	GO:0061630: ubiquitin protein ligase activity	8.47E-03
22	GO:0000166: nucleotide binding	1.61E-02
23	GO:0005507: copper ion binding	2.07E-02
24	GO:0016491: oxidoreductase activity	3.25E-02
25	GO:0004672: protein kinase activity	3.51E-02
26	GO:0003729: mRNA binding	3.54E-02

Rank	GO Term	Adjusted P value
1	GO:0071561: nucleus-vacuole junction	0.00E+00
2	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	7.41E-06
3	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	7.41E-06
4	GO:0005770: late endosome	1.77E-05
5	GO:0045254: pyruvate dehydrogenase complex	2.00E-05
6	GO:0005643: nuclear pore	4.92E-05
7	GO:0005774: vacuolar membrane	1.77E-04
8	GO:0000148: 1,3-beta-D-glucan synthase complex	2.52E-04
9	GO:0005839: proteasome core complex	7.02E-04
10	GO:0000932: P-body	1.40E-03
11	GO:0000325: plant-type vacuole	1.84E-03
12	GO:0005794: Golgi apparatus	2.24E-03
13	GO:0005773: vacuole	2.41E-03
14	GO:0000502: proteasome complex	2.82E-03
15	GO:0005681: spliceosomal complex	3.16E-03
16	GO:0005829: cytosol	3.37E-03
17	GO:0010287: plastoglobule	4.03E-03
18	GO:0005654: nucleoplasm	4.10E-03
19	GO:0005759: mitochondrial matrix	4.88E-03
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.50E-03
21	GO:0009506: plasmodesma	7.66E-03
22	GO:0043231: intracellular membrane-bounded organelle	1.15E-02
23	GO:0005777: peroxisome	1.78E-02
24	GO:0009534: chloroplast thylakoid	1.84E-02
25	GO:0005783: endoplasmic reticulum	2.02E-02
26	GO:0005802: trans-Golgi network	2.26E-02
27	GO:0009536: plastid	3.08E-02