Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
2GO:0045185: maintenance of protein location0.00E+00
3GO:0006592: ornithine biosynthetic process0.00E+00
4GO:0032780: negative regulation of ATPase activity0.00E+00
5GO:0006482: protein demethylation0.00E+00
6GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
7GO:0010360: negative regulation of anion channel activity0.00E+00
8GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
9GO:0035269: protein O-linked mannosylation0.00E+00
10GO:0006468: protein phosphorylation6.96E-05
11GO:0006631: fatty acid metabolic process9.96E-05
12GO:0046686: response to cadmium ion1.42E-04
13GO:0009819: drought recovery2.03E-04
14GO:0080120: CAAX-box protein maturation2.29E-04
15GO:0071586: CAAX-box protein processing2.29E-04
16GO:0006431: methionyl-tRNA aminoacylation2.29E-04
17GO:1990641: response to iron ion starvation2.29E-04
18GO:0006422: aspartyl-tRNA aminoacylation2.29E-04
19GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.29E-04
20GO:0010036: response to boron-containing substance2.29E-04
21GO:0033306: phytol metabolic process2.29E-04
22GO:1902361: mitochondrial pyruvate transmembrane transport2.29E-04
23GO:0000302: response to reactive oxygen species2.32E-04
24GO:0015031: protein transport3.23E-04
25GO:0019441: tryptophan catabolic process to kynurenine5.10E-04
26GO:0097054: L-glutamate biosynthetic process5.10E-04
27GO:0031648: protein destabilization5.10E-04
28GO:0015914: phospholipid transport5.10E-04
29GO:0015824: proline transport5.10E-04
30GO:0080029: cellular response to boron-containing substance levels5.10E-04
31GO:0006212: uracil catabolic process5.10E-04
32GO:1904961: quiescent center organization5.10E-04
33GO:0006101: citrate metabolic process5.10E-04
34GO:0019483: beta-alanine biosynthetic process5.10E-04
35GO:0006850: mitochondrial pyruvate transport5.10E-04
36GO:0031349: positive regulation of defense response5.10E-04
37GO:0051258: protein polymerization5.10E-04
38GO:0007154: cell communication5.10E-04
39GO:0045454: cell redox homeostasis6.07E-04
40GO:0010053: root epidermal cell differentiation8.00E-04
41GO:0010150: leaf senescence8.11E-04
42GO:0080055: low-affinity nitrate transport8.29E-04
43GO:0072661: protein targeting to plasma membrane8.29E-04
44GO:0048281: inflorescence morphogenesis8.29E-04
45GO:0002230: positive regulation of defense response to virus by host8.29E-04
46GO:0010359: regulation of anion channel activity8.29E-04
47GO:0061158: 3'-UTR-mediated mRNA destabilization8.29E-04
48GO:0055114: oxidation-reduction process1.11E-03
49GO:1902290: positive regulation of defense response to oomycetes1.18E-03
50GO:0070676: intralumenal vesicle formation1.18E-03
51GO:0001676: long-chain fatty acid metabolic process1.18E-03
52GO:0010116: positive regulation of abscisic acid biosynthetic process1.18E-03
53GO:0046713: borate transport1.18E-03
54GO:0019438: aromatic compound biosynthetic process1.18E-03
55GO:0006537: glutamate biosynthetic process1.18E-03
56GO:0031408: oxylipin biosynthetic process1.18E-03
57GO:0015700: arsenite transport1.18E-03
58GO:0006542: glutamine biosynthetic process1.57E-03
59GO:0070534: protein K63-linked ubiquitination1.57E-03
60GO:0019676: ammonia assimilation cycle1.57E-03
61GO:0033320: UDP-D-xylose biosynthetic process1.57E-03
62GO:0010363: regulation of plant-type hypersensitive response1.57E-03
63GO:0006097: glyoxylate cycle2.01E-03
64GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.48E-03
65GO:0006561: proline biosynthetic process2.48E-03
66GO:0006301: postreplication repair2.48E-03
67GO:0070814: hydrogen sulfide biosynthetic process2.48E-03
68GO:0042732: D-xylose metabolic process2.48E-03
69GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.48E-03
70GO:1902456: regulation of stomatal opening2.48E-03
71GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.97E-03
72GO:1902074: response to salt3.50E-03
73GO:0043090: amino acid import3.50E-03
74GO:1900056: negative regulation of leaf senescence3.50E-03
75GO:1900057: positive regulation of leaf senescence3.50E-03
76GO:0050829: defense response to Gram-negative bacterium3.50E-03
77GO:0042128: nitrate assimilation3.80E-03
78GO:2000070: regulation of response to water deprivation4.06E-03
79GO:0006102: isocitrate metabolic process4.06E-03
80GO:0016559: peroxisome fission4.06E-03
81GO:0009787: regulation of abscisic acid-activated signaling pathway4.06E-03
82GO:0006506: GPI anchor biosynthetic process4.06E-03
83GO:0006526: arginine biosynthetic process4.65E-03
84GO:0043562: cellular response to nitrogen levels4.65E-03
85GO:0009699: phenylpropanoid biosynthetic process4.65E-03
86GO:0009657: plastid organization4.65E-03
87GO:0010120: camalexin biosynthetic process4.65E-03
88GO:0048767: root hair elongation4.66E-03
89GO:0010043: response to zinc ion5.13E-03
90GO:0046685: response to arsenic-containing substance5.27E-03
91GO:0090305: nucleic acid phosphodiester bond hydrolysis5.27E-03
92GO:0019432: triglyceride biosynthetic process5.27E-03
93GO:0006865: amino acid transport5.37E-03
94GO:0009617: response to bacterium5.65E-03
95GO:1900426: positive regulation of defense response to bacterium5.91E-03
96GO:0048268: clathrin coat assembly5.91E-03
97GO:0010449: root meristem growth5.91E-03
98GO:0043069: negative regulation of programmed cell death6.58E-03
99GO:0000103: sulfate assimilation6.58E-03
100GO:0006897: endocytosis6.68E-03
101GO:0051707: response to other organism7.25E-03
102GO:0018119: peptidyl-cysteine S-nitrosylation7.28E-03
103GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.00E-03
104GO:0000266: mitochondrial fission8.00E-03
105GO:0006790: sulfur compound metabolic process8.00E-03
106GO:0015706: nitrate transport8.00E-03
107GO:0006979: response to oxidative stress8.33E-03
108GO:0006970: response to osmotic stress8.63E-03
109GO:0055046: microgametogenesis8.75E-03
110GO:0009718: anthocyanin-containing compound biosynthetic process8.75E-03
111GO:0005986: sucrose biosynthetic process8.75E-03
112GO:0009266: response to temperature stimulus9.52E-03
113GO:0007034: vacuolar transport9.52E-03
114GO:0051603: proteolysis involved in cellular protein catabolic process1.01E-02
115GO:0070588: calcium ion transmembrane transport1.03E-02
116GO:0046854: phosphatidylinositol phosphorylation1.03E-02
117GO:0009225: nucleotide-sugar metabolic process1.03E-02
118GO:0010039: response to iron ion1.03E-02
119GO:0009737: response to abscisic acid1.05E-02
120GO:0034976: response to endoplasmic reticulum stress1.11E-02
121GO:2000377: regulation of reactive oxygen species metabolic process1.20E-02
122GO:0005992: trehalose biosynthetic process1.20E-02
123GO:0009620: response to fungus1.27E-02
124GO:0009695: jasmonic acid biosynthetic process1.28E-02
125GO:0007005: mitochondrion organization1.46E-02
126GO:0031348: negative regulation of defense response1.46E-02
127GO:0016226: iron-sulfur cluster assembly1.46E-02
128GO:0006730: one-carbon metabolic process1.46E-02
129GO:0030433: ubiquitin-dependent ERAD pathway1.46E-02
130GO:0006511: ubiquitin-dependent protein catabolic process1.49E-02
131GO:0010227: floral organ abscission1.56E-02
132GO:0032259: methylation1.61E-02
133GO:0009561: megagametogenesis1.65E-02
134GO:0016117: carotenoid biosynthetic process1.75E-02
135GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.75E-02
136GO:0006662: glycerol ether metabolic process1.95E-02
137GO:0048544: recognition of pollen2.05E-02
138GO:0019252: starch biosynthetic process2.16E-02
139GO:0006633: fatty acid biosynthetic process2.20E-02
140GO:0071554: cell wall organization or biogenesis2.27E-02
141GO:0010193: response to ozone2.27E-02
142GO:0030163: protein catabolic process2.48E-02
143GO:0009651: response to salt stress2.50E-02
144GO:0006914: autophagy2.60E-02
145GO:0007166: cell surface receptor signaling pathway2.77E-02
146GO:0006470: protein dephosphorylation2.77E-02
147GO:0051607: defense response to virus2.83E-02
148GO:0006906: vesicle fusion3.19E-02
149GO:0016311: dephosphorylation3.43E-02
150GO:0035556: intracellular signal transduction3.72E-02
151GO:0016310: phosphorylation3.78E-02
152GO:0009407: toxin catabolic process3.81E-02
153GO:0007568: aging3.94E-02
154GO:0010119: regulation of stomatal movement3.94E-02
155GO:0045087: innate immune response4.21E-02
156GO:0006099: tricarboxylic acid cycle4.34E-02
157GO:0034599: cellular response to oxidative stress4.34E-02
158GO:0006887: exocytosis4.76E-02
159GO:0016192: vesicle-mediated transport4.86E-02
160GO:0046777: protein autophosphorylation4.94E-02
RankGO TermAdjusted P value
1GO:0051723: protein methylesterase activity0.00E+00
2GO:0004157: dihydropyrimidinase activity0.00E+00
3GO:0008777: acetylornithine deacetylase activity0.00E+00
4GO:0042030: ATPase inhibitor activity0.00E+00
5GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
6GO:0080138: borate uptake transmembrane transporter activity0.00E+00
7GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
8GO:0015930: glutamate synthase activity0.00E+00
9GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives0.00E+00
10GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
11GO:0004674: protein serine/threonine kinase activity3.44E-05
12GO:0005524: ATP binding5.85E-05
13GO:0004029: aldehyde dehydrogenase (NAD) activity8.74E-05
14GO:0102391: decanoate--CoA ligase activity1.21E-04
15GO:0004467: long-chain fatty acid-CoA ligase activity1.59E-04
16GO:0004825: methionine-tRNA ligase activity2.29E-04
17GO:0016041: glutamate synthase (ferredoxin) activity2.29E-04
18GO:0004815: aspartate-tRNA ligase activity2.29E-04
19GO:0008802: betaine-aldehyde dehydrogenase activity2.29E-04
20GO:0004321: fatty-acyl-CoA synthase activity2.29E-04
21GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity3.62E-04
22GO:0008171: O-methyltransferase activity4.23E-04
23GO:0005543: phospholipid binding4.90E-04
24GO:0046872: metal ion binding4.96E-04
25GO:0008757: S-adenosylmethionine-dependent methyltransferase activity5.04E-04
26GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.10E-04
27GO:0015105: arsenite transmembrane transporter activity5.10E-04
28GO:0003994: aconitate hydratase activity5.10E-04
29GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity5.10E-04
30GO:0004750: ribulose-phosphate 3-epimerase activity5.10E-04
31GO:0004061: arylformamidase activity5.10E-04
32GO:0015036: disulfide oxidoreductase activity5.10E-04
33GO:0004781: sulfate adenylyltransferase (ATP) activity8.29E-04
34GO:0080054: low-affinity nitrate transmembrane transporter activity8.29E-04
35GO:0004324: ferredoxin-NADP+ reductase activity8.29E-04
36GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.29E-04
37GO:0050833: pyruvate transmembrane transporter activity8.29E-04
38GO:0015193: L-proline transmembrane transporter activity8.29E-04
39GO:0016656: monodehydroascorbate reductase (NADH) activity1.18E-03
40GO:0046715: borate transmembrane transporter activity1.18E-03
41GO:0008276: protein methyltransferase activity1.18E-03
42GO:0016301: kinase activity1.34E-03
43GO:0004672: protein kinase activity1.56E-03
44GO:0009916: alternative oxidase activity1.57E-03
45GO:0003995: acyl-CoA dehydrogenase activity1.57E-03
46GO:0050660: flavin adenine dinucleotide binding1.95E-03
47GO:0051538: 3 iron, 4 sulfur cluster binding2.01E-03
48GO:0004356: glutamate-ammonia ligase activity2.01E-03
49GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.01E-03
50GO:0015035: protein disulfide oxidoreductase activity2.34E-03
51GO:0036402: proteasome-activating ATPase activity2.48E-03
52GO:0048040: UDP-glucuronate decarboxylase activity2.48E-03
53GO:0003824: catalytic activity2.87E-03
54GO:0051920: peroxiredoxin activity2.97E-03
55GO:0070403: NAD+ binding2.97E-03
56GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.97E-03
57GO:0004602: glutathione peroxidase activity2.97E-03
58GO:0004144: diacylglycerol O-acyltransferase activity2.97E-03
59GO:0051213: dioxygenase activity3.41E-03
60GO:0043295: glutathione binding3.50E-03
61GO:0102425: myricetin 3-O-glucosyltransferase activity3.50E-03
62GO:0102360: daphnetin 3-O-glucosyltransferase activity3.50E-03
63GO:0016787: hydrolase activity3.57E-03
64GO:0016209: antioxidant activity4.06E-03
65GO:0047893: flavonol 3-O-glucosyltransferase activity4.06E-03
66GO:0004033: aldo-keto reductase (NADP) activity4.06E-03
67GO:0016491: oxidoreductase activity4.11E-03
68GO:0009055: electron carrier activity4.37E-03
69GO:0005507: copper ion binding4.44E-03
70GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.27E-03
71GO:0016207: 4-coumarate-CoA ligase activity5.27E-03
72GO:0030955: potassium ion binding5.91E-03
73GO:0004743: pyruvate kinase activity5.91E-03
74GO:0004712: protein serine/threonine/tyrosine kinase activity6.14E-03
75GO:0005545: 1-phosphatidylinositol binding6.58E-03
76GO:0004713: protein tyrosine kinase activity6.58E-03
77GO:0000049: tRNA binding8.00E-03
78GO:0015293: symporter activity8.15E-03
79GO:0005388: calcium-transporting ATPase activity8.75E-03
80GO:0004175: endopeptidase activity9.52E-03
81GO:0004535: poly(A)-specific ribonuclease activity9.52E-03
82GO:0017025: TBP-class protein binding1.03E-02
83GO:0015171: amino acid transmembrane transporter activity1.08E-02
84GO:0043130: ubiquitin binding1.20E-02
85GO:0008408: 3'-5' exonuclease activity1.37E-02
86GO:0035251: UDP-glucosyltransferase activity1.37E-02
87GO:0004298: threonine-type endopeptidase activity1.37E-02
88GO:0003727: single-stranded RNA binding1.65E-02
89GO:0003756: protein disulfide isomerase activity1.65E-02
90GO:0047134: protein-disulfide reductase activity1.75E-02
91GO:0030276: clathrin binding1.95E-02
92GO:0004791: thioredoxin-disulfide reductase activity2.05E-02
93GO:0016853: isomerase activity2.05E-02
94GO:0008565: protein transporter activity2.10E-02
95GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.48E-02
96GO:0008237: metallopeptidase activity2.71E-02
97GO:0016413: O-acetyltransferase activity2.83E-02
98GO:0015250: water channel activity2.94E-02
99GO:0009931: calcium-dependent protein serine/threonine kinase activity3.19E-02
100GO:0004683: calmodulin-dependent protein kinase activity3.31E-02
101GO:0004806: triglyceride lipase activity3.31E-02
102GO:0030247: polysaccharide binding3.31E-02
103GO:0008236: serine-type peptidase activity3.43E-02
104GO:0008168: methyltransferase activity3.60E-02
105GO:0005096: GTPase activator activity3.68E-02
106GO:0004601: peroxidase activity3.74E-02
107GO:0004222: metalloendopeptidase activity3.81E-02
108GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.94E-02
109GO:0003746: translation elongation factor activity4.21E-02
110GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.21E-02
111GO:0000149: SNARE binding4.48E-02
112GO:0008233: peptidase activity4.54E-02
113GO:0051539: 4 iron, 4 sulfur cluster binding4.62E-02
114GO:0061630: ubiquitin protein ligase activity4.86E-02
115GO:0004364: glutathione transferase activity4.90E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0046862: chromoplast membrane0.00E+00
3GO:0005886: plasma membrane1.13E-08
4GO:0005829: cytosol7.78E-08
5GO:0005782: peroxisomal matrix8.95E-06
6GO:0000502: proteasome complex1.61E-05
7GO:0005777: peroxisome1.78E-04
8GO:0031901: early endosome membrane3.04E-04
9GO:0033185: dolichol-phosphate-mannose synthase complex5.10E-04
10GO:0031314: extrinsic component of mitochondrial inner membrane5.10E-04
11GO:0016328: lateral plasma membrane8.29E-04
12GO:0030139: endocytic vesicle8.29E-04
13GO:0005905: clathrin-coated pit1.18E-03
14GO:0032585: multivesicular body membrane1.18E-03
15GO:0031372: UBC13-MMS2 complex1.57E-03
16GO:0005771: multivesicular body2.48E-03
17GO:0031597: cytosolic proteasome complex2.97E-03
18GO:0000815: ESCRT III complex2.97E-03
19GO:0005778: peroxisomal membrane3.04E-03
20GO:0031595: nuclear proteasome complex3.50E-03
21GO:0031305: integral component of mitochondrial inner membrane4.06E-03
22GO:0005737: cytoplasm4.97E-03
23GO:0008540: proteasome regulatory particle, base subcomplex5.91E-03
24GO:0030125: clathrin vesicle coat6.58E-03
25GO:0008541: proteasome regulatory particle, lid subcomplex7.28E-03
26GO:0005783: endoplasmic reticulum7.64E-03
27GO:0005794: Golgi apparatus8.27E-03
28GO:0016020: membrane9.09E-03
29GO:0005773: vacuole9.88E-03
30GO:0030176: integral component of endoplasmic reticulum membrane1.03E-02
31GO:0005769: early endosome1.11E-02
32GO:0070469: respiratory chain1.28E-02
33GO:0005839: proteasome core complex1.37E-02
34GO:0005741: mitochondrial outer membrane1.37E-02
35GO:0030136: clathrin-coated vesicle1.75E-02
36GO:0005770: late endosome1.95E-02
37GO:0009504: cell plate2.16E-02
38GO:0071944: cell periphery2.48E-02
39GO:0032580: Golgi cisterna membrane2.60E-02
40GO:0048046: apoplast2.90E-02
41GO:0000932: P-body2.94E-02
42GO:0005788: endoplasmic reticulum lumen3.06E-02
43GO:0005819: spindle4.48E-02
44GO:0031201: SNARE complex4.76E-02
45GO:0031902: late endosome membrane4.76E-02
46GO:0005789: endoplasmic reticulum membrane4.97E-02
Gene type



Gene DE type