co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:0071474: cellular hyperosmotic response	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0070584: mitochondrion morphogenesis	0.00E+00
5	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
6	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0046677: response to antibiotic	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0015717: triose phosphate transport	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	2.76E-17
12	GO:0015979: photosynthesis	4.50E-16
13	GO:0018298: protein-chromophore linkage	3.89E-12
14	GO:0010114: response to red light	3.31E-11
15	GO:0009645: response to low light intensity stimulus	5.69E-09
16	GO:0015995: chlorophyll biosynthetic process	4.02E-07
17	GO:0010218: response to far red light	6.95E-07
18	GO:0009637: response to blue light	1.01E-06
19	GO:0009769: photosynthesis, light harvesting in photosystem II	1.04E-06
20	GO:0009644: response to high light intensity	2.46E-06
21	GO:0009765: photosynthesis, light harvesting	1.97E-05
22	GO:0009416: response to light stimulus	2.79E-05
23	GO:0010196: nonphotochemical quenching	8.96E-05
24	GO:0006474: N-terminal protein amino acid acetylation	1.58E-04
25	GO:0017198: N-terminal peptidyl-serine acetylation	1.58E-04
26	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.58E-04
27	GO:0015812: gamma-aminobutyric acid transport	1.58E-04
28	GO:0006475: internal protein amino acid acetylation	1.58E-04
29	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.60E-04
30	GO:0051262: protein tetramerization	3.60E-04
31	GO:0009915: phloem sucrose loading	3.60E-04
32	GO:0035436: triose phosphate transmembrane transport	5.89E-04
33	GO:1902448: positive regulation of shade avoidance	5.89E-04
34	GO:0055114: oxidation-reduction process	6.97E-04
35	GO:0009269: response to desiccation	7.18E-04
36	GO:0003333: amino acid transmembrane transport	7.18E-04
37	GO:0044211: CTP salvage	8.43E-04
38	GO:0042938: dipeptide transport	1.12E-03
39	GO:2000306: positive regulation of photomorphogenesis	1.12E-03
40	GO:0010600: regulation of auxin biosynthetic process	1.12E-03
41	GO:0015846: polyamine transport	1.12E-03
42	GO:0030104: water homeostasis	1.12E-03
43	GO:0015713: phosphoglycerate transport	1.12E-03
44	GO:0044206: UMP salvage	1.12E-03
45	GO:0016123: xanthophyll biosynthetic process	1.41E-03
46	GO:0043097: pyrimidine nucleoside salvage	1.41E-03
47	GO:0009643: photosynthetic acclimation	1.74E-03
48	GO:0009635: response to herbicide	1.74E-03
49	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.74E-03
50	GO:0045962: positive regulation of development, heterochronic	1.74E-03
51	GO:0006655: phosphatidylglycerol biosynthetic process	1.74E-03
52	GO:0006206: pyrimidine nucleobase metabolic process	1.74E-03
53	GO:0010189: vitamin E biosynthetic process	2.09E-03
54	GO:0071470: cellular response to osmotic stress	2.09E-03
55	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.09E-03
56	GO:0007623: circadian rhythm	2.31E-03
57	GO:0051510: regulation of unidimensional cell growth	2.45E-03
58	GO:0010161: red light signaling pathway	2.45E-03
59	GO:1900056: negative regulation of leaf senescence	2.45E-03
60	GO:0080186: developmental vegetative growth	2.45E-03
61	GO:0050821: protein stabilization	2.84E-03
62	GO:0010928: regulation of auxin mediated signaling pathway	2.84E-03
63	GO:0009642: response to light intensity	2.84E-03
64	GO:0009704: de-etiolation	2.84E-03
65	GO:0009910: negative regulation of flower development	3.04E-03
66	GO:0010119: regulation of stomatal movement	3.04E-03
67	GO:0010099: regulation of photomorphogenesis	3.25E-03
68	GO:0007186: G-protein coupled receptor signaling pathway	3.25E-03
69	GO:0009657: plastid organization	3.25E-03
70	GO:0034599: cellular response to oxidative stress	3.48E-03
71	GO:0048507: meristem development	3.67E-03
72	GO:0010206: photosystem II repair	3.67E-03
73	GO:0090333: regulation of stomatal closure	3.67E-03
74	GO:0008356: asymmetric cell division	4.12E-03
75	GO:0042761: very long-chain fatty acid biosynthetic process	4.12E-03
76	GO:0010380: regulation of chlorophyll biosynthetic process	4.12E-03
77	GO:0009640: photomorphogenesis	4.29E-03
78	GO:0009688: abscisic acid biosynthetic process	4.58E-03
79	GO:0009641: shade avoidance	4.58E-03
80	GO:0006949: syncytium formation	4.58E-03
81	GO:0009723: response to ethylene	4.83E-03
82	GO:0018119: peptidyl-cysteine S-nitrosylation	5.05E-03
83	GO:0030148: sphingolipid biosynthetic process	5.05E-03
84	GO:0046856: phosphatidylinositol dephosphorylation	5.05E-03
85	GO:0009698: phenylpropanoid metabolic process	5.05E-03
86	GO:0015770: sucrose transport	5.05E-03
87	GO:0043085: positive regulation of catalytic activity	5.05E-03
88	GO:0080167: response to karrikin	5.28E-03
89	GO:0009409: response to cold	5.52E-03
90	GO:0016024: CDP-diacylglycerol biosynthetic process	5.55E-03
91	GO:0015706: nitrate transport	5.55E-03
92	GO:0044550: secondary metabolite biosynthetic process	5.87E-03
93	GO:0018107: peptidyl-threonine phosphorylation	6.06E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	6.06E-03
95	GO:0009767: photosynthetic electron transport chain	6.06E-03
96	GO:0009909: regulation of flower development	6.39E-03
97	GO:0009887: animal organ morphogenesis	6.59E-03
98	GO:0010207: photosystem II assembly	6.59E-03
99	GO:0090351: seedling development	7.13E-03
100	GO:0005985: sucrose metabolic process	7.13E-03
101	GO:0006636: unsaturated fatty acid biosynthetic process	7.69E-03
102	GO:0006289: nucleotide-excision repair	8.27E-03
103	GO:0006629: lipid metabolic process	8.66E-03
104	GO:0006874: cellular calcium ion homeostasis	8.86E-03
105	GO:0048511: rhythmic process	9.46E-03
106	GO:0010017: red or far-red light signaling pathway	1.01E-02
107	GO:0071215: cellular response to abscisic acid stimulus	1.07E-02
108	GO:0009686: gibberellin biosynthetic process	1.07E-02
109	GO:0045492: xylan biosynthetic process	1.14E-02
110	GO:0070417: cellular response to cold	1.20E-02
111	GO:0010182: sugar mediated signaling pathway	1.34E-02
112	GO:0009741: response to brassinosteroid	1.34E-02
113	GO:0010305: leaf vascular tissue pattern formation	1.34E-02
114	GO:0006662: glycerol ether metabolic process	1.34E-02
115	GO:0006814: sodium ion transport	1.41E-02
116	GO:0008654: phospholipid biosynthetic process	1.48E-02
117	GO:0009791: post-embryonic development	1.48E-02
118	GO:0010228: vegetative to reproductive phase transition of meristem	1.49E-02
119	GO:0010193: response to ozone	1.56E-02
120	GO:0000302: response to reactive oxygen species	1.56E-02
121	GO:1901657: glycosyl compound metabolic process	1.71E-02
122	GO:0009828: plant-type cell wall loosening	1.78E-02
123	GO:0016126: sterol biosynthetic process	2.02E-02
124	GO:0009826: unidimensional cell growth	2.13E-02
125	GO:0009658: chloroplast organization	2.21E-02
126	GO:0048573: photoperiodism, flowering	2.27E-02
127	GO:0005975: carbohydrate metabolic process	2.28E-02
128	GO:0016311: dephosphorylation	2.36E-02
129	GO:0006970: response to osmotic stress	2.38E-02
130	GO:0006811: ion transport	2.62E-02
131	GO:0007568: aging	2.71E-02
132	GO:0009631: cold acclimation	2.71E-02
133	GO:0006865: amino acid transport	2.80E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-02
135	GO:0046777: protein autophosphorylation	2.93E-02
136	GO:0045454: cell redox homeostasis	3.28E-02
137	GO:0042542: response to hydrogen peroxide	3.36E-02
138	GO:0051707: response to other organism	3.46E-02
139	GO:0009965: leaf morphogenesis	3.76E-02
140	GO:0032259: methylation	3.86E-02
141	GO:0009664: plant-type cell wall organization	4.07E-02
142	GO:0006812: cation transport	4.07E-02
143	GO:0048364: root development	4.21E-02
144	GO:0006355: regulation of transcription, DNA-templated	4.26E-02
145	GO:0009585: red, far-red light phototransduction	4.28E-02
146	GO:0010224: response to UV-B	4.38E-02
147	GO:0006351: transcription, DNA-templated	4.48E-02
148	GO:0006857: oligopeptide transport	4.49E-02
149	GO:0006417: regulation of translation	4.60E-02
150	GO:0043086: negative regulation of catalytic activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
6	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
7	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0045550: geranylgeranyl reductase activity	0.00E+00
12	GO:0080082: esculin beta-glucosidase activity	0.00E+00
13	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
14	GO:0031409: pigment binding	1.80E-15
15	GO:0016168: chlorophyll binding	1.53E-12
16	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.58E-04
17	GO:0005227: calcium activated cation channel activity	1.58E-04
18	GO:0080079: cellobiose glucosidase activity	1.58E-04
19	GO:1990189: peptide-serine-N-acetyltransferase activity	1.58E-04
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.58E-04
21	GO:0052631: sphingolipid delta-8 desaturase activity	1.58E-04
22	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.58E-04
23	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.58E-04
24	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.58E-04
25	GO:0015297: antiporter activity	3.35E-04
26	GO:0015180: L-alanine transmembrane transporter activity	3.60E-04
27	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.60E-04
28	GO:0016868: intramolecular transferase activity, phosphotransferases	3.60E-04
29	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.60E-04
30	GO:0016630: protochlorophyllide reductase activity	3.60E-04
31	GO:0008728: GTP diphosphokinase activity	3.60E-04
32	GO:0016805: dipeptidase activity	5.89E-04
33	GO:0071917: triose-phosphate transmembrane transporter activity	5.89E-04
34	GO:0004180: carboxypeptidase activity	5.89E-04
35	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.89E-04
36	GO:0015189: L-lysine transmembrane transporter activity	8.43E-04
37	GO:0015181: arginine transmembrane transporter activity	8.43E-04
38	GO:0015203: polyamine transmembrane transporter activity	8.43E-04
39	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.43E-04
40	GO:0016851: magnesium chelatase activity	8.43E-04
41	GO:0015120: phosphoglycerate transmembrane transporter activity	1.12E-03
42	GO:0004845: uracil phosphoribosyltransferase activity	1.12E-03
43	GO:0042936: dipeptide transporter activity	1.12E-03
44	GO:0005313: L-glutamate transmembrane transporter activity	1.12E-03
45	GO:0004506: squalene monooxygenase activity	1.12E-03
46	GO:0070628: proteasome binding	1.12E-03
47	GO:0004930: G-protein coupled receptor activity	1.12E-03
48	GO:0046872: metal ion binding	1.32E-03
49	GO:0051538: 3 iron, 4 sulfur cluster binding	1.41E-03
50	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.59E-03
51	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.74E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	1.74E-03
53	GO:0031593: polyubiquitin binding	1.74E-03
54	GO:0004462: lactoylglutathione lyase activity	1.74E-03
55	GO:0004849: uridine kinase activity	2.09E-03
56	GO:0005261: cation channel activity	2.09E-03
57	GO:0009927: histidine phosphotransfer kinase activity	2.09E-03
58	GO:0004602: glutathione peroxidase activity	2.09E-03
59	GO:0008506: sucrose:proton symporter activity	2.45E-03
60	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.25E-03
61	GO:0003993: acid phosphatase activity	3.48E-03
62	GO:0071949: FAD binding	3.67E-03
63	GO:0000989: transcription factor activity, transcription factor binding	3.67E-03
64	GO:0015174: basic amino acid transmembrane transporter activity	4.12E-03
65	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.58E-03
66	GO:0008047: enzyme activator activity	4.58E-03
67	GO:0051537: 2 iron, 2 sulfur cluster binding	4.64E-03
68	GO:0015293: symporter activity	4.82E-03
69	GO:0047372: acylglycerol lipase activity	5.05E-03
70	GO:0008515: sucrose transmembrane transporter activity	5.05E-03
71	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.55E-03
72	GO:0005315: inorganic phosphate transmembrane transporter activity	6.06E-03
73	GO:0004022: alcohol dehydrogenase (NAD) activity	6.06E-03
74	GO:0015171: amino acid transmembrane transporter activity	6.39E-03
75	GO:0004190: aspartic-type endopeptidase activity	7.13E-03
76	GO:0003712: transcription cofactor activity	7.13E-03
77	GO:0005217: intracellular ligand-gated ion channel activity	7.13E-03
78	GO:0004970: ionotropic glutamate receptor activity	7.13E-03
79	GO:0043130: ubiquitin binding	8.27E-03
80	GO:0015035: protein disulfide oxidoreductase activity	8.46E-03
81	GO:0005216: ion channel activity	8.86E-03
82	GO:0004707: MAP kinase activity	9.46E-03
83	GO:0003727: single-stranded RNA binding	1.14E-02
84	GO:0008514: organic anion transmembrane transporter activity	1.14E-02
85	GO:0005506: iron ion binding	1.19E-02
86	GO:0047134: protein-disulfide reductase activity	1.20E-02
87	GO:0015144: carbohydrate transmembrane transporter activity	1.23E-02
88	GO:0016787: hydrolase activity	1.23E-02
89	GO:0008080: N-acetyltransferase activity	1.34E-02
90	GO:0005351: sugar:proton symporter activity	1.39E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	1.41E-02
92	GO:0048038: quinone binding	1.56E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.71E-02
94	GO:0003684: damaged DNA binding	1.78E-02
95	GO:0008168: methyltransferase activity	2.13E-02
96	GO:0004672: protein kinase activity	2.17E-02
97	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.19E-02
98	GO:0102483: scopolin beta-glucosidase activity	2.27E-02
99	GO:0004497: monooxygenase activity	2.74E-02
100	GO:0008422: beta-glucosidase activity	3.08E-02
101	GO:0004185: serine-type carboxypeptidase activity	3.46E-02
102	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.54E-02
103	GO:0043621: protein self-association	3.66E-02
104	GO:0005198: structural molecule activity	3.76E-02
105	GO:0016298: lipase activity	4.38E-02
106	GO:0004674: protein serine/threonine kinase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	1.93E-18
4	GO:0009534: chloroplast thylakoid	4.25E-17
5	GO:0009522: photosystem I	1.03E-15
6	GO:0009941: chloroplast envelope	4.04E-14
7	GO:0009579: thylakoid	4.66E-13
8	GO:0010287: plastoglobule	7.77E-13
9	GO:0009507: chloroplast	3.06E-12
10	GO:0030076: light-harvesting complex	2.90E-11
11	GO:0009523: photosystem II	7.44E-08
12	GO:0009517: PSII associated light-harvesting complex II	8.07E-08
13	GO:0016021: integral component of membrane	1.00E-05
14	GO:0042651: thylakoid membrane	3.19E-05
15	GO:0009570: chloroplast stroma	4.71E-05
16	GO:0009538: photosystem I reaction center	1.15E-04
17	GO:0016020: membrane	2.15E-04
18	GO:0031415: NatA complex	3.60E-04
19	GO:0030095: chloroplast photosystem II	4.31E-04
20	GO:0010007: magnesium chelatase complex	5.89E-04
21	GO:0031969: chloroplast membrane	9.77E-04
22	GO:0030660: Golgi-associated vesicle membrane	1.12E-03
23	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.12E-03
24	GO:0009543: chloroplast thylakoid lumen	1.54E-03
25	GO:0009533: chloroplast stromal thylakoid	2.45E-03
26	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.84E-03
27	GO:0031977: thylakoid lumen	3.95E-03
28	GO:0005765: lysosomal membrane	5.05E-03
29	GO:0031966: mitochondrial membrane	5.38E-03
30	GO:0009706: chloroplast inner membrane	8.21E-03
31	GO:0009654: photosystem II oxygen evolving complex	8.86E-03
32	GO:0005887: integral component of plasma membrane	1.28E-02
33	GO:0019898: extrinsic component of membrane	1.48E-02
34	GO:0005789: endoplasmic reticulum membrane	2.30E-02
35	GO:0009707: chloroplast outer membrane	2.44E-02
36	GO:0016607: nuclear speck	4.93E-02
37	GO:0010008: endosome membrane	4.93E-02