GO Enrichment Analysis of Co-expressed Genes with
AT3G56910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 5 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 6 | GO:0042493: response to drug | 0.00E+00 |
| 7 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 8 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 9 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 10 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 11 | GO:0006412: translation | 3.96E-21 |
| 12 | GO:0042254: ribosome biogenesis | 2.32E-11 |
| 13 | GO:0032544: plastid translation | 3.07E-10 |
| 14 | GO:0009658: chloroplast organization | 1.82E-07 |
| 15 | GO:0009735: response to cytokinin | 1.09E-05 |
| 16 | GO:0015979: photosynthesis | 7.92E-05 |
| 17 | GO:0042372: phylloquinone biosynthetic process | 1.11E-04 |
| 18 | GO:0000413: protein peptidyl-prolyl isomerization | 1.40E-04 |
| 19 | GO:0043489: RNA stabilization | 2.18E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.18E-04 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 2.18E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.18E-04 |
| 23 | GO:0060627: regulation of vesicle-mediated transport | 2.18E-04 |
| 24 | GO:0006783: heme biosynthetic process | 2.82E-04 |
| 25 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.86E-04 |
| 26 | GO:0006568: tryptophan metabolic process | 4.86E-04 |
| 27 | GO:0010024: phytochromobilin biosynthetic process | 4.86E-04 |
| 28 | GO:0010207: photosystem II assembly | 6.66E-04 |
| 29 | GO:0006788: heme oxidation | 7.90E-04 |
| 30 | GO:0006954: inflammatory response | 7.90E-04 |
| 31 | GO:0015840: urea transport | 7.90E-04 |
| 32 | GO:0090391: granum assembly | 7.90E-04 |
| 33 | GO:0006518: peptide metabolic process | 7.90E-04 |
| 34 | GO:0006696: ergosterol biosynthetic process | 7.90E-04 |
| 35 | GO:2001295: malonyl-CoA biosynthetic process | 7.90E-04 |
| 36 | GO:0006241: CTP biosynthetic process | 1.13E-03 |
| 37 | GO:0006165: nucleoside diphosphate phosphorylation | 1.13E-03 |
| 38 | GO:0006228: UTP biosynthetic process | 1.13E-03 |
| 39 | GO:0009650: UV protection | 1.13E-03 |
| 40 | GO:0033014: tetrapyrrole biosynthetic process | 1.13E-03 |
| 41 | GO:0006424: glutamyl-tRNA aminoacylation | 1.13E-03 |
| 42 | GO:0046739: transport of virus in multicellular host | 1.13E-03 |
| 43 | GO:2001141: regulation of RNA biosynthetic process | 1.13E-03 |
| 44 | GO:0009411: response to UV | 1.31E-03 |
| 45 | GO:0006183: GTP biosynthetic process | 1.50E-03 |
| 46 | GO:0015976: carbon utilization | 1.50E-03 |
| 47 | GO:0042335: cuticle development | 1.66E-03 |
| 48 | GO:0032543: mitochondrial translation | 1.91E-03 |
| 49 | GO:0010236: plastoquinone biosynthetic process | 1.91E-03 |
| 50 | GO:0031365: N-terminal protein amino acid modification | 1.91E-03 |
| 51 | GO:0042742: defense response to bacterium | 2.06E-03 |
| 52 | GO:0010190: cytochrome b6f complex assembly | 2.35E-03 |
| 53 | GO:0042549: photosystem II stabilization | 2.35E-03 |
| 54 | GO:0000470: maturation of LSU-rRNA | 2.35E-03 |
| 55 | GO:0045454: cell redox homeostasis | 2.55E-03 |
| 56 | GO:1901259: chloroplast rRNA processing | 2.83E-03 |
| 57 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.83E-03 |
| 58 | GO:0006694: steroid biosynthetic process | 2.83E-03 |
| 59 | GO:0010019: chloroplast-nucleus signaling pathway | 2.83E-03 |
| 60 | GO:0010555: response to mannitol | 2.83E-03 |
| 61 | GO:0009955: adaxial/abaxial pattern specification | 2.83E-03 |
| 62 | GO:0006869: lipid transport | 2.93E-03 |
| 63 | GO:0010027: thylakoid membrane organization | 3.17E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 3.33E-03 |
| 65 | GO:0009610: response to symbiotic fungus | 3.33E-03 |
| 66 | GO:0009772: photosynthetic electron transport in photosystem II | 3.33E-03 |
| 67 | GO:0015995: chlorophyll biosynthetic process | 3.72E-03 |
| 68 | GO:0009642: response to light intensity | 3.86E-03 |
| 69 | GO:0042255: ribosome assembly | 3.86E-03 |
| 70 | GO:0006353: DNA-templated transcription, termination | 3.86E-03 |
| 71 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.42E-03 |
| 72 | GO:0009808: lignin metabolic process | 4.42E-03 |
| 73 | GO:0071482: cellular response to light stimulus | 4.42E-03 |
| 74 | GO:0009631: cold acclimation | 4.76E-03 |
| 75 | GO:0034599: cellular response to oxidative stress | 5.46E-03 |
| 76 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.62E-03 |
| 77 | GO:0006839: mitochondrial transport | 5.95E-03 |
| 78 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.25E-03 |
| 79 | GO:0045036: protein targeting to chloroplast | 6.25E-03 |
| 80 | GO:0006949: syncytium formation | 6.25E-03 |
| 81 | GO:0009773: photosynthetic electron transport in photosystem I | 6.91E-03 |
| 82 | GO:0043085: positive regulation of catalytic activity | 6.91E-03 |
| 83 | GO:0006352: DNA-templated transcription, initiation | 6.91E-03 |
| 84 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.91E-03 |
| 85 | GO:0006006: glucose metabolic process | 8.30E-03 |
| 86 | GO:0009725: response to hormone | 8.30E-03 |
| 87 | GO:0009767: photosynthetic electron transport chain | 8.30E-03 |
| 88 | GO:0042538: hyperosmotic salinity response | 8.45E-03 |
| 89 | GO:0010020: chloroplast fission | 9.03E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 9.03E-03 |
| 91 | GO:0006833: water transport | 1.06E-02 |
| 92 | GO:0019762: glucosinolate catabolic process | 1.06E-02 |
| 93 | GO:0000027: ribosomal large subunit assembly | 1.14E-02 |
| 94 | GO:0019344: cysteine biosynthetic process | 1.14E-02 |
| 95 | GO:0006418: tRNA aminoacylation for protein translation | 1.22E-02 |
| 96 | GO:0009409: response to cold | 1.22E-02 |
| 97 | GO:0006457: protein folding | 1.24E-02 |
| 98 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.48E-02 |
| 99 | GO:0016042: lipid catabolic process | 1.49E-02 |
| 100 | GO:0019722: calcium-mediated signaling | 1.57E-02 |
| 101 | GO:0008033: tRNA processing | 1.75E-02 |
| 102 | GO:0006662: glycerol ether metabolic process | 1.85E-02 |
| 103 | GO:0009790: embryo development | 1.90E-02 |
| 104 | GO:0006633: fatty acid biosynthetic process | 2.04E-02 |
| 105 | GO:0009791: post-embryonic development | 2.05E-02 |
| 106 | GO:0000302: response to reactive oxygen species | 2.15E-02 |
| 107 | GO:0016132: brassinosteroid biosynthetic process | 2.15E-02 |
| 108 | GO:0045490: pectin catabolic process | 2.25E-02 |
| 109 | GO:0032502: developmental process | 2.25E-02 |
| 110 | GO:0009630: gravitropism | 2.25E-02 |
| 111 | GO:1901657: glycosyl compound metabolic process | 2.36E-02 |
| 112 | GO:0009828: plant-type cell wall loosening | 2.46E-02 |
| 113 | GO:0007267: cell-cell signaling | 2.57E-02 |
| 114 | GO:0009627: systemic acquired resistance | 3.02E-02 |
| 115 | GO:0010411: xyloglucan metabolic process | 3.14E-02 |
| 116 | GO:0016311: dephosphorylation | 3.25E-02 |
| 117 | GO:0009826: unidimensional cell growth | 3.34E-02 |
| 118 | GO:0009817: defense response to fungus, incompatible interaction | 3.37E-02 |
| 119 | GO:0048481: plant ovule development | 3.37E-02 |
| 120 | GO:0018298: protein-chromophore linkage | 3.37E-02 |
| 121 | GO:0009407: toxin catabolic process | 3.62E-02 |
| 122 | GO:0009834: plant-type secondary cell wall biogenesis | 3.62E-02 |
| 123 | GO:0045087: innate immune response | 3.99E-02 |
| 124 | GO:0009637: response to blue light | 3.99E-02 |
| 125 | GO:0006810: transport | 4.22E-02 |
| 126 | GO:0055085: transmembrane transport | 4.25E-02 |
| 127 | GO:0030001: metal ion transport | 4.38E-02 |
| 128 | GO:0006631: fatty acid metabolic process | 4.51E-02 |
| 129 | GO:0042542: response to hydrogen peroxide | 4.65E-02 |
| 130 | GO:0010114: response to red light | 4.78E-02 |
| 131 | GO:0051707: response to other organism | 4.78E-02 |
| 132 | GO:0006508: proteolysis | 4.81E-02 |
| 133 | GO:0042546: cell wall biogenesis | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 7 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 3.76E-25 |
| 9 | GO:0003735: structural constituent of ribosome | 5.70E-23 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.19E-07 |
| 11 | GO:0043495: protein anchor | 3.41E-05 |
| 12 | GO:0051920: peroxiredoxin activity | 1.11E-04 |
| 13 | GO:0016209: antioxidant activity | 1.88E-04 |
| 14 | GO:0004655: porphobilinogen synthase activity | 2.18E-04 |
| 15 | GO:0015200: methylammonium transmembrane transporter activity | 2.18E-04 |
| 16 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.18E-04 |
| 17 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.18E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.86E-04 |
| 19 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.86E-04 |
| 20 | GO:0008266: poly(U) RNA binding | 6.66E-04 |
| 21 | GO:0070330: aromatase activity | 7.90E-04 |
| 22 | GO:0002161: aminoacyl-tRNA editing activity | 7.90E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.90E-04 |
| 24 | GO:0004075: biotin carboxylase activity | 7.90E-04 |
| 25 | GO:0030267: glyoxylate reductase (NADP) activity | 7.90E-04 |
| 26 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 7.90E-04 |
| 27 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 7.90E-04 |
| 28 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 7.90E-04 |
| 29 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 7.90E-04 |
| 30 | GO:0005528: FK506 binding | 9.15E-04 |
| 31 | GO:0004550: nucleoside diphosphate kinase activity | 1.13E-03 |
| 32 | GO:0043023: ribosomal large subunit binding | 1.13E-03 |
| 33 | GO:0008097: 5S rRNA binding | 1.13E-03 |
| 34 | GO:0030570: pectate lyase activity | 1.31E-03 |
| 35 | GO:0016788: hydrolase activity, acting on ester bonds | 1.43E-03 |
| 36 | GO:0016987: sigma factor activity | 1.50E-03 |
| 37 | GO:0004392: heme oxygenase (decyclizing) activity | 1.50E-03 |
| 38 | GO:0015204: urea transmembrane transporter activity | 1.50E-03 |
| 39 | GO:0004659: prenyltransferase activity | 1.50E-03 |
| 40 | GO:0001053: plastid sigma factor activity | 1.50E-03 |
| 41 | GO:0004040: amidase activity | 1.91E-03 |
| 42 | GO:0018685: alkane 1-monooxygenase activity | 1.91E-03 |
| 43 | GO:0003989: acetyl-CoA carboxylase activity | 1.91E-03 |
| 44 | GO:0052689: carboxylic ester hydrolase activity | 2.25E-03 |
| 45 | GO:0004130: cytochrome-c peroxidase activity | 2.35E-03 |
| 46 | GO:0016208: AMP binding | 2.35E-03 |
| 47 | GO:0016688: L-ascorbate peroxidase activity | 2.35E-03 |
| 48 | GO:0008519: ammonium transmembrane transporter activity | 2.35E-03 |
| 49 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.83E-03 |
| 50 | GO:0019899: enzyme binding | 3.33E-03 |
| 51 | GO:0008235: metalloexopeptidase activity | 3.33E-03 |
| 52 | GO:0003723: RNA binding | 3.37E-03 |
| 53 | GO:0102483: scopolin beta-glucosidase activity | 3.72E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 3.86E-03 |
| 55 | GO:0030674: protein binding, bridging | 3.86E-03 |
| 56 | GO:0042802: identical protein binding | 5.56E-03 |
| 57 | GO:0047617: acyl-CoA hydrolase activity | 5.62E-03 |
| 58 | GO:0008422: beta-glucosidase activity | 5.70E-03 |
| 59 | GO:0008289: lipid binding | 5.79E-03 |
| 60 | GO:0008047: enzyme activator activity | 6.25E-03 |
| 61 | GO:0008794: arsenate reductase (glutaredoxin) activity | 6.91E-03 |
| 62 | GO:0004177: aminopeptidase activity | 6.91E-03 |
| 63 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.28E-03 |
| 64 | GO:0000049: tRNA binding | 7.60E-03 |
| 65 | GO:0004089: carbonate dehydratase activity | 8.30E-03 |
| 66 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.27E-02 |
| 67 | GO:0015035: protein disulfide oxidoreductase activity | 1.33E-02 |
| 68 | GO:0022891: substrate-specific transmembrane transporter activity | 1.48E-02 |
| 69 | GO:0003924: GTPase activity | 1.54E-02 |
| 70 | GO:0003727: single-stranded RNA binding | 1.57E-02 |
| 71 | GO:0047134: protein-disulfide reductase activity | 1.66E-02 |
| 72 | GO:0004812: aminoacyl-tRNA ligase activity | 1.66E-02 |
| 73 | GO:0016829: lyase activity | 1.76E-02 |
| 74 | GO:0008080: N-acetyltransferase activity | 1.85E-02 |
| 75 | GO:0010181: FMN binding | 1.95E-02 |
| 76 | GO:0004791: thioredoxin-disulfide reductase activity | 1.95E-02 |
| 77 | GO:0005509: calcium ion binding | 2.14E-02 |
| 78 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.15E-02 |
| 79 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.36E-02 |
| 80 | GO:0015250: water channel activity | 2.79E-02 |
| 81 | GO:0016168: chlorophyll binding | 2.91E-02 |
| 82 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.14E-02 |
| 83 | GO:0008236: serine-type peptidase activity | 3.25E-02 |
| 84 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.37E-02 |
| 85 | GO:0004601: peroxidase activity | 3.47E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 3.62E-02 |
| 87 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.74E-02 |
| 88 | GO:0030145: manganese ion binding | 3.74E-02 |
| 89 | GO:0003746: translation elongation factor activity | 3.99E-02 |
| 90 | GO:0003993: acid phosphatase activity | 4.12E-02 |
| 91 | GO:0003729: mRNA binding | 4.31E-02 |
| 92 | GO:0050661: NADP binding | 4.38E-02 |
| 93 | GO:0004364: glutathione transferase activity | 4.65E-02 |
| 94 | GO:0004185: serine-type carboxypeptidase activity | 4.78E-02 |
| 95 | GO:0046872: metal ion binding | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 2.87E-53 |
| 4 | GO:0009507: chloroplast | 3.09E-47 |
| 5 | GO:0009941: chloroplast envelope | 8.41E-33 |
| 6 | GO:0009579: thylakoid | 9.59E-27 |
| 7 | GO:0005840: ribosome | 5.07E-21 |
| 8 | GO:0031977: thylakoid lumen | 1.71E-17 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 1.76E-17 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 7.84E-15 |
| 11 | GO:0009534: chloroplast thylakoid | 1.10E-11 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 1.82E-06 |
| 13 | GO:0019898: extrinsic component of membrane | 9.38E-06 |
| 14 | GO:0000311: plastid large ribosomal subunit | 2.13E-05 |
| 15 | GO:0048046: apoplast | 2.78E-05 |
| 16 | GO:0042651: thylakoid membrane | 6.42E-05 |
| 17 | GO:0009515: granal stacked thylakoid | 2.18E-04 |
| 18 | GO:0009547: plastid ribosome | 2.18E-04 |
| 19 | GO:0015934: large ribosomal subunit | 5.89E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 6.66E-04 |
| 21 | GO:0000312: plastid small ribosomal subunit | 6.66E-04 |
| 22 | GO:0015935: small ribosomal subunit | 1.10E-03 |
| 23 | GO:0016020: membrane | 1.74E-03 |
| 24 | GO:0022625: cytosolic large ribosomal subunit | 2.09E-03 |
| 25 | GO:0010319: stromule | 2.82E-03 |
| 26 | GO:0042807: central vacuole | 3.33E-03 |
| 27 | GO:0000326: protein storage vacuole | 4.42E-03 |
| 28 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.00E-03 |
| 29 | GO:0008180: COP9 signalosome | 5.00E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 5.00E-03 |
| 31 | GO:0022626: cytosolic ribosome | 7.82E-03 |
| 32 | GO:0031012: extracellular matrix | 8.30E-03 |
| 33 | GO:0031969: chloroplast membrane | 9.40E-03 |
| 34 | GO:0043234: protein complex | 1.06E-02 |
| 35 | GO:0009505: plant-type cell wall | 1.07E-02 |
| 36 | GO:0009532: plastid stroma | 1.30E-02 |
| 37 | GO:0005576: extracellular region | 1.92E-02 |
| 38 | GO:0009523: photosystem II | 2.05E-02 |
| 39 | GO:0009295: nucleoid | 2.57E-02 |
| 40 | GO:0005778: peroxisomal membrane | 2.57E-02 |
| 41 | GO:0030529: intracellular ribonucleoprotein complex | 2.79E-02 |
| 42 | GO:0022627: cytosolic small ribosomal subunit | 2.97E-02 |
| 43 | GO:0046658: anchored component of plasma membrane | 2.97E-02 |
| 44 | GO:0009536: plastid | 3.26E-02 |
| 45 | GO:0009707: chloroplast outer membrane | 3.37E-02 |
| 46 | GO:0019005: SCF ubiquitin ligase complex | 3.37E-02 |
| 47 | GO:0005777: peroxisome | 3.76E-02 |