Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006903: vesicle targeting0.00E+00
2GO:1902446: regulation of shade avoidance0.00E+00
3GO:2000011: regulation of adaxial/abaxial pattern formation1.54E-06
4GO:0034398: telomere tethering at nuclear periphery4.37E-06
5GO:0006612: protein targeting to membrane1.33E-05
6GO:0006893: Golgi to plasma membrane transport1.33E-05
7GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery1.33E-05
8GO:0006882: cellular zinc ion homeostasis1.33E-05
9GO:0000381: regulation of alternative mRNA splicing, via spliceosome1.91E-05
10GO:0031053: primary miRNA processing3.30E-05
11GO:0048509: regulation of meristem development4.09E-05
12GO:0060321: acceptance of pollen6.80E-05
13GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.81E-05
14GO:0010267: production of ta-siRNAs involved in RNA interference8.84E-05
15GO:0071577: zinc II ion transmembrane transport8.84E-05
16GO:0048354: mucilage biosynthetic process involved in seed coat development8.84E-05
17GO:0006406: mRNA export from nucleus1.85E-04
18GO:0006606: protein import into nucleus2.82E-04
19GO:0006904: vesicle docking involved in exocytosis4.04E-04
20GO:0009910: negative regulation of flower development5.70E-04
21GO:0030001: metal ion transport6.58E-04
22GO:0006887: exocytosis6.76E-04
23GO:0009846: pollen germination8.25E-04
24GO:0048367: shoot system development9.79E-04
25GO:0000398: mRNA splicing, via spliceosome1.18E-03
26GO:0008380: RNA splicing1.73E-03
27GO:0009860: pollen tube growth2.17E-03
28GO:0006397: mRNA processing3.18E-03
29GO:0015031: protein transport8.80E-03
RankGO TermAdjusted P value
1GO:0017056: structural constituent of nuclear pore5.85E-05
2GO:0005487: nucleocytoplasmic transporter activity8.84E-05
3GO:0008139: nuclear localization sequence binding1.34E-04
4GO:0005385: zinc ion transmembrane transporter activity1.85E-04
5GO:0046873: metal ion transmembrane transporter activity2.97E-04
6GO:0003729: mRNA binding6.96E-04
7GO:0003723: RNA binding3.45E-03
8GO:0000166: nucleotide binding4.57E-03
9GO:0005215: transporter activity7.98E-03
10GO:0003676: nucleic acid binding2.02E-02
11GO:0005515: protein binding4.98E-02
RankGO TermAdjusted P value
1GO:0005684: U2-type spliceosomal complex0.00E+00
2GO:0005846: nuclear cap binding complex4.37E-06
3GO:0044614: nuclear pore cytoplasmic filaments8.33E-06
4GO:0010445: nuclear dicing body1.91E-05
5GO:0005686: U2 snRNP9.94E-05
6GO:0031965: nuclear membrane3.27E-04
7GO:0000145: exocyst3.57E-04
8GO:0005829: cytosol5.94E-04
9GO:0005856: cytoskeleton7.68E-04
10GO:0005635: nuclear envelope9.01E-04
11GO:0016607: nuclear speck9.79E-04
12GO:0009524: phragmoplast1.29E-03
13GO:0005783: endoplasmic reticulum3.09E-03
14GO:0005730: nucleolus1.08E-02
15GO:0005618: cell wall1.97E-02
16GO:0009506: plasmodesma4.67E-02
Gene type



Gene DE type