Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0044154: histone H3-K14 acetylation0.00E+00
3GO:0006066: alcohol metabolic process0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0043972: histone H3-K23 acetylation0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0042493: response to drug0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0032544: plastid translation6.30E-07
15GO:0009658: chloroplast organization1.31E-06
16GO:0009735: response to cytokinin8.12E-05
17GO:0042254: ribosome biogenesis9.39E-05
18GO:0009773: photosynthetic electron transport in photosystem I9.71E-05
19GO:0010207: photosystem II assembly1.74E-04
20GO:0032543: mitochondrial translation1.90E-04
21GO:0015979: photosynthesis2.22E-04
22GO:0010190: cytochrome b6f complex assembly2.70E-04
23GO:0010067: procambium histogenesis3.62E-04
24GO:0006412: translation4.20E-04
25GO:0071588: hydrogen peroxide mediated signaling pathway4.67E-04
26GO:0060627: regulation of vesicle-mediated transport4.67E-04
27GO:0043489: RNA stabilization4.67E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process4.67E-04
29GO:0043971: histone H3-K18 acetylation4.67E-04
30GO:1904964: positive regulation of phytol biosynthetic process4.67E-04
31GO:0042759: long-chain fatty acid biosynthetic process4.67E-04
32GO:0042371: vitamin K biosynthetic process4.67E-04
33GO:0000413: protein peptidyl-prolyl isomerization6.22E-04
34GO:0009657: plastid organization7.08E-04
35GO:1900865: chloroplast RNA modification9.98E-04
36GO:0006568: tryptophan metabolic process1.01E-03
37GO:0010024: phytochromobilin biosynthetic process1.01E-03
38GO:0010270: photosystem II oxygen evolving complex assembly1.01E-03
39GO:0006695: cholesterol biosynthetic process1.01E-03
40GO:1902326: positive regulation of chlorophyll biosynthetic process1.01E-03
41GO:0006869: lipid transport1.22E-03
42GO:0006816: calcium ion transport1.34E-03
43GO:0043085: positive regulation of catalytic activity1.34E-03
44GO:0006415: translational termination1.34E-03
45GO:0010027: thylakoid membrane organization1.42E-03
46GO:0090506: axillary shoot meristem initiation1.64E-03
47GO:0090391: granum assembly1.64E-03
48GO:0010581: regulation of starch biosynthetic process1.64E-03
49GO:0006788: heme oxidation1.64E-03
50GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.64E-03
51GO:0015995: chlorophyll biosynthetic process1.75E-03
52GO:0010020: chloroplast fission1.97E-03
53GO:0010223: secondary shoot formation1.97E-03
54GO:0007231: osmosensory signaling pathway2.38E-03
55GO:0051085: chaperone mediated protein folding requiring cofactor2.38E-03
56GO:0009152: purine ribonucleotide biosynthetic process2.38E-03
57GO:0046653: tetrahydrofolate metabolic process2.38E-03
58GO:0009650: UV protection2.38E-03
59GO:0006241: CTP biosynthetic process2.38E-03
60GO:0006424: glutamyl-tRNA aminoacylation2.38E-03
61GO:0006165: nucleoside diphosphate phosphorylation2.38E-03
62GO:0006228: UTP biosynthetic process2.38E-03
63GO:0043572: plastid fission2.38E-03
64GO:0010088: phloem development2.38E-03
65GO:0006986: response to unfolded protein2.38E-03
66GO:2001141: regulation of RNA biosynthetic process2.38E-03
67GO:0016556: mRNA modification2.38E-03
68GO:0010025: wax biosynthetic process2.46E-03
69GO:0006418: tRNA aminoacylation for protein translation3.01E-03
70GO:0009765: photosynthesis, light harvesting3.20E-03
71GO:0006183: GTP biosynthetic process3.20E-03
72GO:0033500: carbohydrate homeostasis3.20E-03
73GO:0015994: chlorophyll metabolic process3.20E-03
74GO:0042991: transcription factor import into nucleus3.20E-03
75GO:0009956: radial pattern formation3.20E-03
76GO:0061077: chaperone-mediated protein folding3.31E-03
77GO:0045454: cell redox homeostasis3.87E-03
78GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.96E-03
79GO:0009411: response to UV3.96E-03
80GO:0001944: vasculature development3.96E-03
81GO:0016123: xanthophyll biosynthetic process4.10E-03
82GO:0080110: sporopollenin biosynthetic process4.10E-03
83GO:0006564: L-serine biosynthetic process4.10E-03
84GO:0045038: protein import into chloroplast thylakoid membrane4.10E-03
85GO:0016120: carotene biosynthetic process4.10E-03
86GO:0031365: N-terminal protein amino acid modification4.10E-03
87GO:0009451: RNA modification4.15E-03
88GO:0010089: xylem development4.31E-03
89GO:0019722: calcium-mediated signaling4.31E-03
90GO:0016117: carotenoid biosynthetic process4.67E-03
91GO:0042335: cuticle development5.05E-03
92GO:0042549: photosystem II stabilization5.08E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.08E-03
94GO:0006555: methionine metabolic process5.08E-03
95GO:0016554: cytidine to uridine editing5.08E-03
96GO:0006828: manganese ion transport5.08E-03
97GO:0032973: amino acid export5.08E-03
98GO:0006014: D-ribose metabolic process5.08E-03
99GO:0009955: adaxial/abaxial pattern specification6.13E-03
100GO:0042372: phylloquinone biosynthetic process6.13E-03
101GO:0006694: steroid biosynthetic process6.13E-03
102GO:0048280: vesicle fusion with Golgi apparatus6.13E-03
103GO:1901259: chloroplast rRNA processing6.13E-03
104GO:0010019: chloroplast-nucleus signaling pathway6.13E-03
105GO:0048444: floral organ morphogenesis6.13E-03
106GO:0010555: response to mannitol6.13E-03
107GO:0055114: oxidation-reduction process6.50E-03
108GO:0043090: amino acid import7.25E-03
109GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.25E-03
110GO:0010196: nonphotochemical quenching7.25E-03
111GO:0006400: tRNA modification7.25E-03
112GO:0008272: sulfate transport7.25E-03
113GO:0006457: protein folding7.98E-03
114GO:0009828: plant-type cell wall loosening8.17E-03
115GO:0048564: photosystem I assembly8.44E-03
116GO:0045292: mRNA cis splicing, via spliceosome8.44E-03
117GO:0030091: protein repair8.44E-03
118GO:0009819: drought recovery8.44E-03
119GO:0009642: response to light intensity8.44E-03
120GO:0007267: cell-cell signaling8.68E-03
121GO:0071482: cellular response to light stimulus9.69E-03
122GO:0019430: removal of superoxide radicals9.69E-03
123GO:0044030: regulation of DNA methylation9.69E-03
124GO:0009808: lignin metabolic process9.69E-03
125GO:0090305: nucleic acid phosphodiester bond hydrolysis1.10E-02
126GO:0010206: photosystem II repair1.10E-02
127GO:0080144: amino acid homeostasis1.10E-02
128GO:0045337: farnesyl diphosphate biosynthetic process1.10E-02
129GO:0033384: geranyl diphosphate biosynthetic process1.10E-02
130GO:0000373: Group II intron splicing1.10E-02
131GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.14E-02
132GO:0006779: porphyrin-containing compound biosynthetic process1.24E-02
133GO:0035999: tetrahydrofolate interconversion1.24E-02
134GO:0042761: very long-chain fatty acid biosynthetic process1.24E-02
135GO:0010380: regulation of chlorophyll biosynthetic process1.24E-02
136GO:0018298: protein-chromophore linkage1.28E-02
137GO:0042744: hydrogen peroxide catabolic process1.35E-02
138GO:0006949: syncytium formation1.38E-02
139GO:0006896: Golgi to vacuole transport1.38E-02
140GO:0006782: protoporphyrinogen IX biosynthetic process1.38E-02
141GO:0007568: aging1.48E-02
142GO:0009631: cold acclimation1.48E-02
143GO:0010015: root morphogenesis1.53E-02
144GO:0009073: aromatic amino acid family biosynthetic process1.53E-02
145GO:0006352: DNA-templated transcription, initiation1.53E-02
146GO:0006810: transport1.55E-02
147GO:0009637: response to blue light1.62E-02
148GO:0006820: anion transport1.69E-02
149GO:0034599: cellular response to oxidative stress1.70E-02
150GO:0006839: mitochondrial transport1.85E-02
151GO:0006006: glucose metabolic process1.85E-02
152GO:0016042: lipid catabolic process1.86E-02
153GO:0006631: fatty acid metabolic process1.93E-02
154GO:0009934: regulation of meristem structural organization2.01E-02
155GO:0010143: cutin biosynthetic process2.01E-02
156GO:0007034: vacuolar transport2.01E-02
157GO:0009933: meristem structural organization2.01E-02
158GO:0019253: reductive pentose-phosphate cycle2.01E-02
159GO:0010114: response to red light2.10E-02
160GO:0080188: RNA-directed DNA methylation2.19E-02
161GO:0070588: calcium ion transmembrane transport2.19E-02
162GO:0019762: glucosinolate catabolic process2.36E-02
163GO:0019344: cysteine biosynthetic process2.54E-02
164GO:0000027: ribosomal large subunit assembly2.54E-02
165GO:0007010: cytoskeleton organization2.54E-02
166GO:0042538: hyperosmotic salinity response2.64E-02
167GO:0009664: plant-type cell wall organization2.64E-02
168GO:0051302: regulation of cell division2.73E-02
169GO:0009768: photosynthesis, light harvesting in photosystem I2.73E-02
170GO:0007017: microtubule-based process2.73E-02
171GO:0009736: cytokinin-activated signaling pathway2.83E-02
172GO:0006813: potassium ion transport2.83E-02
173GO:0009826: unidimensional cell growth2.85E-02
174GO:0030245: cellulose catabolic process3.11E-02
175GO:0016226: iron-sulfur cluster assembly3.11E-02
176GO:0006730: one-carbon metabolic process3.11E-02
177GO:0080092: regulation of pollen tube growth3.11E-02
178GO:0006508: proteolysis3.18E-02
179GO:0010584: pollen exine formation3.51E-02
180GO:0042147: retrograde transport, endosome to Golgi3.72E-02
181GO:0010118: stomatal movement3.93E-02
182GO:0009793: embryo development ending in seed dormancy3.93E-02
183GO:0010087: phloem or xylem histogenesis3.93E-02
184GO:0006396: RNA processing4.14E-02
185GO:0006662: glycerol ether metabolic process4.15E-02
186GO:0010305: leaf vascular tissue pattern formation4.15E-02
187GO:0048544: recognition of pollen4.37E-02
188GO:0007018: microtubule-based movement4.37E-02
189GO:0006623: protein targeting to vacuole4.59E-02
190GO:0048825: cotyledon development4.59E-02
191GO:0019252: starch biosynthetic process4.59E-02
192GO:0080156: mitochondrial mRNA modification4.81E-02
193GO:0000302: response to reactive oxygen species4.81E-02
194GO:0006891: intra-Golgi vesicle-mediated transport4.81E-02
195GO:0016132: brassinosteroid biosynthetic process4.81E-02
196GO:0042742: defense response to bacterium4.92E-02
197GO:0071555: cell wall organization4.92E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
6GO:0046577: long-chain-alcohol oxidase activity0.00E+00
7GO:0004823: leucine-tRNA ligase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0019843: rRNA binding1.42E-10
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.79E-07
17GO:0051920: peroxiredoxin activity1.01E-05
18GO:0003735: structural constituent of ribosome1.84E-05
19GO:0016209: antioxidant activity2.37E-05
20GO:0002161: aminoacyl-tRNA editing activity3.30E-05
21GO:0016149: translation release factor activity, codon specific7.10E-05
22GO:0016788: hydrolase activity, acting on ester bonds9.39E-05
23GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.62E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.67E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity4.67E-04
26GO:0004560: alpha-L-fucosidase activity4.67E-04
27GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity4.67E-04
28GO:0003867: 4-aminobutyrate transaminase activity4.67E-04
29GO:0009055: electron carrier activity4.83E-04
30GO:0003747: translation release factor activity8.48E-04
31GO:0008289: lipid binding8.63E-04
32GO:0052689: carboxylic ester hydrolase activity8.71E-04
33GO:0008509: anion transmembrane transporter activity1.01E-03
34GO:0004617: phosphoglycerate dehydrogenase activity1.01E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.01E-03
36GO:0016630: protochlorophyllide reductase activity1.01E-03
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.01E-03
38GO:0047746: chlorophyllase activity1.01E-03
39GO:0008047: enzyme activator activity1.16E-03
40GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.64E-03
41GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.64E-03
42GO:0005504: fatty acid binding1.64E-03
43GO:0070330: aromatase activity1.64E-03
44GO:0050734: hydroxycinnamoyltransferase activity1.64E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.64E-03
46GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.64E-03
47GO:0008864: formyltetrahydrofolate deformylase activity1.64E-03
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.64E-03
49GO:0004565: beta-galactosidase activity1.74E-03
50GO:0004519: endonuclease activity1.82E-03
51GO:0004601: peroxidase activity1.93E-03
52GO:0008266: poly(U) RNA binding1.97E-03
53GO:0001872: (1->3)-beta-D-glucan binding2.38E-03
54GO:0004550: nucleoside diphosphate kinase activity2.38E-03
55GO:0005528: FK506 binding2.73E-03
56GO:0001053: plastid sigma factor activity3.20E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.20E-03
58GO:0045430: chalcone isomerase activity3.20E-03
59GO:0016987: sigma factor activity3.20E-03
60GO:1990137: plant seed peroxidase activity3.20E-03
61GO:0010385: double-stranded methylated DNA binding3.20E-03
62GO:0004392: heme oxygenase (decyclizing) activity3.20E-03
63GO:0043495: protein anchor3.20E-03
64GO:0004659: prenyltransferase activity3.20E-03
65GO:0008381: mechanically-gated ion channel activity4.10E-03
66GO:0003959: NADPH dehydrogenase activity4.10E-03
67GO:0018685: alkane 1-monooxygenase activity4.10E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor4.10E-03
69GO:0004040: amidase activity4.10E-03
70GO:0004812: aminoacyl-tRNA ligase activity4.67E-03
71GO:0016208: AMP binding5.08E-03
72GO:0004130: cytochrome-c peroxidase activity5.08E-03
73GO:0016688: L-ascorbate peroxidase activity5.08E-03
74GO:0004791: thioredoxin-disulfide reductase activity5.85E-03
75GO:0051753: mannan synthase activity6.13E-03
76GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.13E-03
77GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.13E-03
78GO:0004747: ribokinase activity6.13E-03
79GO:0008235: metalloexopeptidase activity7.25E-03
80GO:0019899: enzyme binding7.25E-03
81GO:0015140: malate transmembrane transporter activity7.25E-03
82GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.67E-03
83GO:0046872: metal ion binding7.75E-03
84GO:0008312: 7S RNA binding8.44E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity8.44E-03
86GO:0004033: aldo-keto reductase (NADP) activity8.44E-03
87GO:0008865: fructokinase activity8.44E-03
88GO:0008237: metallopeptidase activity8.68E-03
89GO:0016168: chlorophyll binding1.03E-02
90GO:0004337: geranyltranstransferase activity1.10E-02
91GO:0008236: serine-type peptidase activity1.21E-02
92GO:0047617: acyl-CoA hydrolase activity1.24E-02
93GO:0005384: manganese ion transmembrane transporter activity1.24E-02
94GO:0030234: enzyme regulator activity1.38E-02
95GO:0004222: metalloendopeptidase activity1.41E-02
96GO:0004161: dimethylallyltranstransferase activity1.53E-02
97GO:0005089: Rho guanyl-nucleotide exchange factor activity1.53E-02
98GO:0004177: aminopeptidase activity1.53E-02
99GO:0000049: tRNA binding1.69E-02
100GO:0045551: cinnamyl-alcohol dehydrogenase activity1.69E-02
101GO:0008017: microtubule binding1.83E-02
102GO:0005262: calcium channel activity1.85E-02
103GO:0008081: phosphoric diester hydrolase activity1.85E-02
104GO:0015095: magnesium ion transmembrane transporter activity1.85E-02
105GO:0003924: GTPase activity1.94E-02
106GO:0016740: transferase activity2.13E-02
107GO:0043621: protein self-association2.27E-02
108GO:0042802: identical protein binding2.34E-02
109GO:0031409: pigment binding2.36E-02
110GO:0051287: NAD binding2.54E-02
111GO:0004857: enzyme inhibitor activity2.54E-02
112GO:0051536: iron-sulfur cluster binding2.54E-02
113GO:0051087: chaperone binding2.73E-02
114GO:0015079: potassium ion transmembrane transporter activity2.73E-02
115GO:0008324: cation transmembrane transporter activity2.73E-02
116GO:0004176: ATP-dependent peptidase activity2.92E-02
117GO:0033612: receptor serine/threonine kinase binding2.92E-02
118GO:0005516: calmodulin binding3.03E-02
119GO:0003777: microtubule motor activity3.13E-02
120GO:0022891: substrate-specific transmembrane transporter activity3.31E-02
121GO:0030570: pectate lyase activity3.31E-02
122GO:0008810: cellulase activity3.31E-02
123GO:0003723: RNA binding3.37E-02
124GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.45E-02
125GO:0005102: receptor binding3.72E-02
126GO:0047134: protein-disulfide reductase activity3.72E-02
127GO:0030599: pectinesterase activity3.79E-02
128GO:0004402: histone acetyltransferase activity3.93E-02
129GO:0008080: N-acetyltransferase activity4.15E-02
130GO:0005509: calcium ion binding4.32E-02
131GO:0050662: coenzyme binding4.37E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast2.31E-44
4GO:0009570: chloroplast stroma6.11E-28
5GO:0009535: chloroplast thylakoid membrane3.75E-20
6GO:0009941: chloroplast envelope1.64E-19
7GO:0009579: thylakoid8.51E-15
8GO:0009543: chloroplast thylakoid lumen2.72E-13
9GO:0031977: thylakoid lumen1.96E-11
10GO:0009534: chloroplast thylakoid1.85E-10
11GO:0046658: anchored component of plasma membrane3.79E-09
12GO:0048046: apoplast1.11E-08
13GO:0005840: ribosome3.35E-06
14GO:0009505: plant-type cell wall8.40E-06
15GO:0031225: anchored component of membrane2.39E-05
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.57E-05
17GO:0000311: plastid large ribosomal subunit1.20E-04
18GO:0031969: chloroplast membrane1.58E-04
19GO:0009515: granal stacked thylakoid4.67E-04
20GO:0009547: plastid ribosome4.67E-04
21GO:0005874: microtubule6.66E-04
22GO:0005618: cell wall9.34E-04
23GO:0080085: signal recognition particle, chloroplast targeting1.01E-03
24GO:0005875: microtubule associated complex2.46E-03
25GO:0009654: photosystem II oxygen evolving complex3.01E-03
26GO:0042651: thylakoid membrane3.01E-03
27GO:0000793: condensed chromosome5.08E-03
28GO:0005886: plasma membrane5.60E-03
29GO:0000815: ESCRT III complex6.13E-03
30GO:0019898: extrinsic component of membrane6.28E-03
31GO:0043231: intracellular membrane-bounded organelle6.63E-03
32GO:0009533: chloroplast stromal thylakoid7.25E-03
33GO:0000794: condensed nuclear chromosome7.25E-03
34GO:0012507: ER to Golgi transport vesicle membrane8.44E-03
35GO:0010319: stromule8.68E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.69E-03
37GO:0005811: lipid particle9.69E-03
38GO:0045298: tubulin complex1.10E-02
39GO:0005763: mitochondrial small ribosomal subunit1.10E-02
40GO:0009506: plasmodesma1.14E-02
41GO:0016324: apical plasma membrane1.38E-02
42GO:0030095: chloroplast photosystem II2.01E-02
43GO:0000312: plastid small ribosomal subunit2.01E-02
44GO:0030076: light-harvesting complex2.19E-02
45GO:0016020: membrane2.24E-02
46GO:0005576: extracellular region2.73E-02
47GO:0009536: plastid2.78E-02
48GO:0009532: plastid stroma2.92E-02
49GO:0005871: kinesin complex3.72E-02
50GO:0009706: chloroplast inner membrane4.02E-02
51GO:0009522: photosystem I4.37E-02
52GO:0009523: photosystem II4.59E-02
53GO:0010287: plastoglobule4.76E-02
Gene type



Gene DE type