co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0033494: ferulate metabolic process	0.00E+00
9	GO:0006642: triglyceride mobilization	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0045176: apical protein localization	0.00E+00
12	GO:0016553: base conversion or substitution editing	0.00E+00
13	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
14	GO:0006412: translation	4.07E-11
15	GO:0042254: ribosome biogenesis	1.17E-09
16	GO:0015979: photosynthesis	5.91E-09
17	GO:0032544: plastid translation	7.09E-08
18	GO:0015995: chlorophyll biosynthetic process	2.02E-06
19	GO:0009658: chloroplast organization	4.77E-06
20	GO:0010027: thylakoid membrane organization	3.22E-05
21	GO:0042372: phylloquinone biosynthetic process	1.32E-04
22	GO:0010196: nonphotochemical quenching	1.74E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.43E-04
24	GO:0000481: maturation of 5S rRNA	2.43E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	2.43E-04
26	GO:0034337: RNA folding	2.43E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	2.43E-04
28	GO:0006427: histidyl-tRNA aminoacylation	2.43E-04
29	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.43E-04
30	GO:0043489: RNA stabilization	2.43E-04
31	GO:0071482: cellular response to light stimulus	2.74E-04
32	GO:0001736: establishment of planar polarity	5.39E-04
33	GO:0006568: tryptophan metabolic process	5.39E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.39E-04
35	GO:0034755: iron ion transmembrane transport	5.39E-04
36	GO:0009735: response to cytokinin	5.89E-04
37	GO:0016024: CDP-diacylglycerol biosynthetic process	6.09E-04
38	GO:0006006: glucose metabolic process	6.91E-04
39	GO:0006094: gluconeogenesis	6.91E-04
40	GO:0010143: cutin biosynthetic process	7.77E-04
41	GO:0010207: photosystem II assembly	7.77E-04
42	GO:0019253: reductive pentose-phosphate cycle	7.77E-04
43	GO:0030865: cortical cytoskeleton organization	8.75E-04
44	GO:0032504: multicellular organism reproduction	8.75E-04
45	GO:0000913: preprophase band assembly	8.75E-04
46	GO:0006954: inflammatory response	8.75E-04
47	GO:0090391: granum assembly	8.75E-04
48	GO:0019563: glycerol catabolic process	8.75E-04
49	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.75E-04
50	GO:0030001: metal ion transport	9.48E-04
51	GO:0010114: response to red light	1.10E-03
52	GO:1901332: negative regulation of lateral root development	1.25E-03
53	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.25E-03
54	GO:2001141: regulation of RNA biosynthetic process	1.25E-03
55	GO:0009152: purine ribonucleotide biosynthetic process	1.25E-03
56	GO:0046653: tetrahydrofolate metabolic process	1.25E-03
57	GO:0009800: cinnamic acid biosynthetic process	1.25E-03
58	GO:0009650: UV protection	1.25E-03
59	GO:0010088: phloem development	1.25E-03
60	GO:0015994: chlorophyll metabolic process	1.67E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	1.94E-03
62	GO:0006096: glycolytic process	1.98E-03
63	GO:0006564: L-serine biosynthetic process	2.13E-03
64	GO:0010236: plastoquinone biosynthetic process	2.13E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
66	GO:0031365: N-terminal protein amino acid modification	2.13E-03
67	GO:0006461: protein complex assembly	2.13E-03
68	GO:0006751: glutathione catabolic process	2.62E-03
69	GO:0048827: phyllome development	2.62E-03
70	GO:0042549: photosystem II stabilization	2.62E-03
71	GO:0000470: maturation of LSU-rRNA	2.62E-03
72	GO:0006559: L-phenylalanine catabolic process	2.62E-03
73	GO:0006655: phosphatidylglycerol biosynthetic process	2.62E-03
74	GO:0017148: negative regulation of translation	3.15E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	3.15E-03
76	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.15E-03
77	GO:0045454: cell redox homeostasis	3.25E-03
78	GO:0006400: tRNA modification	3.72E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	3.72E-03
80	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.72E-03
81	GO:0006605: protein targeting	4.31E-03
82	GO:0032508: DNA duplex unwinding	4.31E-03
83	GO:0048564: photosystem I assembly	4.31E-03
84	GO:0030091: protein repair	4.31E-03
85	GO:0042255: ribosome assembly	4.31E-03
86	GO:0006353: DNA-templated transcription, termination	4.31E-03
87	GO:0018298: protein-chromophore linkage	4.83E-03
88	GO:0009657: plastid organization	4.93E-03
89	GO:0010311: lateral root formation	5.08E-03
90	GO:0009051: pentose-phosphate shunt, oxidative branch	5.59E-03
91	GO:0006098: pentose-phosphate shunt	5.59E-03
92	GO:0009631: cold acclimation	5.59E-03
93	GO:0010206: photosystem II repair	5.59E-03
94	GO:0009637: response to blue light	6.13E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	6.27E-03
96	GO:0034599: cellular response to oxidative stress	6.41E-03
97	GO:0048829: root cap development	6.99E-03
98	GO:0006949: syncytium formation	6.99E-03
99	GO:0006782: protoporphyrinogen IX biosynthetic process	6.99E-03
100	GO:0006879: cellular iron ion homeostasis	7.73E-03
101	GO:0006352: DNA-templated transcription, initiation	7.73E-03
102	GO:0048765: root hair cell differentiation	7.73E-03
103	GO:0009773: photosynthetic electron transport in photosystem I	7.73E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	7.73E-03
105	GO:0043085: positive regulation of catalytic activity	7.73E-03
106	GO:0010628: positive regulation of gene expression	9.29E-03
107	GO:0010229: inflorescence development	9.29E-03
108	GO:0009725: response to hormone	9.29E-03
109	GO:0010540: basipetal auxin transport	1.01E-02
110	GO:0019762: glucosinolate catabolic process	1.18E-02
111	GO:0051017: actin filament bundle assembly	1.27E-02
112	GO:0000027: ribosomal large subunit assembly	1.27E-02
113	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-02
114	GO:0006825: copper ion transport	1.37E-02
115	GO:0003333: amino acid transmembrane transport	1.46E-02
116	GO:0009793: embryo development ending in seed dormancy	1.46E-02
117	GO:0009411: response to UV	1.66E-02
118	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.66E-02
119	GO:0009306: protein secretion	1.76E-02
120	GO:0016042: lipid catabolic process	1.82E-02
121	GO:0080022: primary root development	1.97E-02
122	GO:0008033: tRNA processing	1.97E-02
123	GO:0000226: microtubule cytoskeleton organization	1.97E-02
124	GO:0042335: cuticle development	1.97E-02
125	GO:0006662: glycerol ether metabolic process	2.07E-02
126	GO:0009958: positive gravitropism	2.07E-02
127	GO:0009790: embryo development	2.23E-02
128	GO:0048825: cotyledon development	2.29E-02
129	GO:0000302: response to reactive oxygen species	2.41E-02
130	GO:0032502: developmental process	2.52E-02
131	GO:0009630: gravitropism	2.52E-02
132	GO:0045490: pectin catabolic process	2.64E-02
133	GO:0030163: protein catabolic process	2.64E-02
134	GO:0071281: cellular response to iron ion	2.64E-02
135	GO:0009451: RNA modification	2.70E-02
136	GO:0009828: plant-type cell wall loosening	2.76E-02
137	GO:0009734: auxin-activated signaling pathway	2.90E-02
138	GO:0009739: response to gibberellin	2.95E-02
139	GO:0042742: defense response to bacterium	3.06E-02
140	GO:0009911: positive regulation of flower development	3.13E-02
141	GO:0001666: response to hypoxia	3.13E-02
142	GO:0016311: dephosphorylation	3.65E-02
143	GO:0009817: defense response to fungus, incompatible interaction	3.78E-02
144	GO:0009416: response to light stimulus	3.87E-02
145	GO:0010218: response to far red light	4.05E-02
146	GO:0009407: toxin catabolic process	4.05E-02
147	GO:0006865: amino acid transport	4.33E-02
148	GO:0009853: photorespiration	4.48E-02
149	GO:0045087: innate immune response	4.48E-02
150	GO:0009723: response to ethylene	4.70E-02
151	GO:0009409: response to cold	4.73E-02
152	GO:0006839: mitochondrial transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0019843: rRNA binding	1.25E-17
7	GO:0003735: structural constituent of ribosome	8.04E-13
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.06E-10
9	GO:0005528: FK506 binding	3.52E-08
10	GO:0016851: magnesium chelatase activity	8.40E-08
11	GO:0043023: ribosomal large subunit binding	2.27E-05
12	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.43E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.43E-04
14	GO:0004807: triose-phosphate isomerase activity	2.43E-04
15	GO:0004821: histidine-tRNA ligase activity	2.43E-04
16	GO:0016788: hydrolase activity, acting on ester bonds	3.58E-04
17	GO:0047746: chlorophyllase activity	5.39E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	5.39E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	5.39E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.39E-04
21	GO:0016630: protochlorophyllide reductase activity	5.39E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.39E-04
23	GO:0008266: poly(U) RNA binding	7.77E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.75E-04
25	GO:0008864: formyltetrahydrofolate deformylase activity	8.75E-04
26	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.75E-04
27	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.75E-04
28	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.75E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	8.75E-04
30	GO:0045548: phenylalanine ammonia-lyase activity	8.75E-04
31	GO:0008097: 5S rRNA binding	1.25E-03
32	GO:0001872: (1->3)-beta-D-glucan binding	1.25E-03
33	GO:0030570: pectate lyase activity	1.53E-03
34	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.67E-03
35	GO:0004659: prenyltransferase activity	1.67E-03
36	GO:0001053: plastid sigma factor activity	1.67E-03
37	GO:0010011: auxin binding	1.67E-03
38	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.67E-03
39	GO:0016987: sigma factor activity	1.67E-03
40	GO:0010328: auxin influx transmembrane transporter activity	1.67E-03
41	GO:0043495: protein anchor	1.67E-03
42	GO:0003959: NADPH dehydrogenase activity	2.13E-03
43	GO:0016208: AMP binding	2.62E-03
44	GO:0016688: L-ascorbate peroxidase activity	2.62E-03
45	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.62E-03
46	GO:0004332: fructose-bisphosphate aldolase activity	2.62E-03
47	GO:0004130: cytochrome-c peroxidase activity	2.62E-03
48	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.62E-03
49	GO:0051920: peroxiredoxin activity	3.15E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.15E-03
51	GO:0008235: metalloexopeptidase activity	3.72E-03
52	GO:0019899: enzyme binding	3.72E-03
53	GO:0016168: chlorophyll binding	3.92E-03
54	GO:0043022: ribosome binding	4.31E-03
55	GO:0016209: antioxidant activity	4.31E-03
56	GO:0008312: 7S RNA binding	4.31E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	4.31E-03
58	GO:0008236: serine-type peptidase activity	4.60E-03
59	GO:0003723: RNA binding	5.25E-03
60	GO:0047617: acyl-CoA hydrolase activity	6.27E-03
61	GO:0005381: iron ion transmembrane transporter activity	6.27E-03
62	GO:0050661: NADP binding	6.98E-03
63	GO:0008047: enzyme activator activity	6.99E-03
64	GO:0004177: aminopeptidase activity	7.73E-03
65	GO:0051287: NAD binding	9.58E-03
66	GO:0031409: pigment binding	1.18E-02
67	GO:0052689: carboxylic ester hydrolase activity	1.31E-02
68	GO:0016491: oxidoreductase activity	1.54E-02
69	GO:0016746: transferase activity, transferring acyl groups	1.57E-02
70	GO:0022891: substrate-specific transmembrane transporter activity	1.66E-02
71	GO:0003727: single-stranded RNA binding	1.76E-02
72	GO:0047134: protein-disulfide reductase activity	1.86E-02
73	GO:0016829: lyase activity	2.07E-02
74	GO:0008080: N-acetyltransferase activity	2.07E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.64E-02
77	GO:0051015: actin filament binding	2.64E-02
78	GO:0005509: calcium ion binding	2.72E-02
79	GO:0016791: phosphatase activity	2.76E-02
80	GO:0016597: amino acid binding	3.01E-02
81	GO:0102483: scopolin beta-glucosidase activity	3.52E-02
82	GO:0004721: phosphoprotein phosphatase activity	3.52E-02
83	GO:0030247: polysaccharide binding	3.52E-02
84	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
85	GO:0008168: methyltransferase activity	3.92E-02
86	GO:0046872: metal ion binding	4.30E-02
87	GO:0003993: acid phosphatase activity	4.62E-02
88	GO:0008422: beta-glucosidase activity	4.76E-02
89	GO:0051539: 4 iron, 4 sulfur cluster binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	4.50E-46
3	GO:0009570: chloroplast stroma	4.00E-40
4	GO:0009941: chloroplast envelope	1.72E-26
5	GO:0009579: thylakoid	5.60E-23
6	GO:0009543: chloroplast thylakoid lumen	5.29E-21
7	GO:0009535: chloroplast thylakoid membrane	5.15E-19
8	GO:0031977: thylakoid lumen	6.77E-19
9	GO:0005840: ribosome	1.86E-16
10	GO:0009534: chloroplast thylakoid	2.12E-12
11	GO:0010007: magnesium chelatase complex	1.73E-08
12	GO:0009654: photosystem II oxygen evolving complex	2.58E-06
13	GO:0019898: extrinsic component of membrane	1.31E-05
14	GO:0030095: chloroplast photosystem II	4.16E-05
15	GO:0042651: thylakoid membrane	8.17E-05
16	GO:0009533: chloroplast stromal thylakoid	1.74E-04
17	GO:0009515: granal stacked thylakoid	2.43E-04
18	GO:0009547: plastid ribosome	2.43E-04
19	GO:0031969: chloroplast membrane	5.13E-04
20	GO:0080085: signal recognition particle, chloroplast targeting	5.39E-04
21	GO:0030981: cortical microtubule cytoskeleton	5.39E-04
22	GO:0015935: small ribosomal subunit	1.28E-03
23	GO:0009523: photosystem II	2.40E-03
24	GO:0009986: cell surface	3.72E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.93E-03
26	GO:0015934: large ribosomal subunit	5.59E-03
27	GO:0008180: COP9 signalosome	5.59E-03
28	GO:0000311: plastid large ribosomal subunit	8.49E-03
29	GO:0032040: small-subunit processome	8.49E-03
30	GO:0000312: plastid small ribosomal subunit	1.01E-02
31	GO:0030076: light-harvesting complex	1.10E-02
32	GO:0016020: membrane	1.26E-02
33	GO:0009536: plastid	1.36E-02
34	GO:0015629: actin cytoskeleton	1.66E-02
35	GO:0005770: late endosome	2.07E-02
36	GO:0009522: photosystem I	2.18E-02
37	GO:0005778: peroxisomal membrane	2.88E-02
38	GO:0010319: stromule	2.88E-02
39	GO:0009295: nucleoid	2.88E-02
40	GO:0030529: intracellular ribonucleoprotein complex	3.13E-02
41	GO:0048046: apoplast	3.40E-02
42	GO:0046658: anchored component of plasma membrane	3.49E-02
43	GO:0019005: SCF ubiquitin ligase complex	3.78E-02
44	GO:0005618: cell wall	3.98E-02
45	GO:0005777: peroxisome	4.58E-02