co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009946: proximal/distal axis specification	0.00E+00
2	GO:0006216: cytidine catabolic process	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0042026: protein refolding	5.15E-06
5	GO:0007005: mitochondrion organization	9.26E-05
6	GO:0010338: leaf formation	1.42E-04
7	GO:0051085: chaperone mediated protein folding requiring cofactor	2.11E-04
8	GO:0010239: chloroplast mRNA processing	2.11E-04
9	GO:0006479: protein methylation	2.85E-04
10	GO:0045088: regulation of innate immune response	2.85E-04
11	GO:0010236: plastoquinone biosynthetic process	3.65E-04
12	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.93E-04
13	GO:0009972: cytidine deamination	4.48E-04
14	GO:0006458: 'de novo' protein folding	5.36E-04
15	GO:0006880: intracellular sequestering of iron ion	6.27E-04
16	GO:0006955: immune response	6.27E-04
17	GO:0006826: iron ion transport	6.27E-04
18	GO:0052543: callose deposition in cell wall	7.22E-04
19	GO:0048193: Golgi vesicle transport	8.20E-04
20	GO:0008356: asymmetric cell division	1.02E-03
21	GO:0006879: cellular iron ion homeostasis	1.24E-03
22	GO:0045037: protein import into chloroplast stroma	1.36E-03
23	GO:0009790: embryo development	1.51E-03
24	GO:0010020: chloroplast fission	1.60E-03
25	GO:0010039: response to iron ion	1.72E-03
26	GO:0009944: polarity specification of adaxial/abaxial axis	1.99E-03
27	GO:0016998: cell wall macromolecule catabolic process	2.26E-03
28	GO:0061077: chaperone-mediated protein folding	2.26E-03
29	GO:0010082: regulation of root meristem growth	2.55E-03
30	GO:0006342: chromatin silencing	3.15E-03
31	GO:0055072: iron ion homeostasis	3.47E-03
32	GO:0000302: response to reactive oxygen species	3.63E-03
33	GO:0006904: vesicle docking involved in exocytosis	4.32E-03
34	GO:0009615: response to virus	4.67E-03
35	GO:0009627: systemic acquired resistance	5.04E-03
36	GO:0008219: cell death	5.60E-03
37	GO:0006887: exocytosis	7.43E-03
38	GO:0009744: response to sucrose	7.87E-03
39	GO:0009908: flower development	7.91E-03
40	GO:0009735: response to cytokinin	8.00E-03
41	GO:0009965: leaf morphogenesis	8.53E-03
42	GO:0006633: fatty acid biosynthetic process	1.71E-02
43	GO:0009451: RNA modification	1.86E-02
44	GO:0009739: response to gibberellin	1.98E-02
45	GO:0006470: protein dephosphorylation	2.01E-02
46	GO:0008380: RNA splicing	2.07E-02
47	GO:0009409: response to cold	2.41E-02
48	GO:0009658: chloroplast organization	2.50E-02
49	GO:0048366: leaf development	2.80E-02
50	GO:0015979: photosynthesis	3.20E-02
51	GO:0045892: negative regulation of transcription, DNA-templated	3.34E-02
52	GO:0009751: response to salicylic acid	3.80E-02
53	GO:0006468: protein phosphorylation	3.99E-02
54	GO:0009753: response to jasmonic acid	4.04E-02
55	GO:0009793: embryo development ending in seed dormancy	4.11E-02
56	GO:0008152: metabolic process	4.12E-02
57	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0047844: deoxycytidine deaminase activity	0.00E+00
2	GO:0044183: protein binding involved in protein folding	2.85E-05
3	GO:0042834: peptidoglycan binding	3.25E-05
4	GO:0004312: fatty acid synthase activity	8.18E-05
5	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.42E-04
6	GO:0008199: ferric iron binding	2.11E-04
7	GO:0001872: (1->3)-beta-D-glucan binding	2.11E-04
8	GO:0004322: ferroxidase activity	2.11E-04
9	GO:0008276: protein methyltransferase activity	2.11E-04
10	GO:0004126: cytidine deaminase activity	5.36E-04
11	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	9.07E-04
12	GO:0051082: unfolded protein binding	1.05E-03
13	GO:0005528: FK506 binding	1.99E-03
14	GO:0042803: protein homodimerization activity	4.20E-03
15	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.32E-03
16	GO:0016597: amino acid binding	4.49E-03
17	GO:0030247: polysaccharide binding	5.22E-03
18	GO:0005198: structural molecule activity	8.53E-03
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.76E-03
20	GO:0016740: transferase activity	1.07E-02
21	GO:0022857: transmembrane transporter activity	1.19E-02
22	GO:0005516: calmodulin binding	1.32E-02
23	GO:0008565: protein transporter activity	1.65E-02
24	GO:0004674: protein serine/threonine kinase activity	2.28E-02
25	GO:0046982: protein heterodimerization activity	2.46E-02
26	GO:0004672: protein kinase activity	2.62E-02
27	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.31E-02
28	GO:0004722: protein serine/threonine phosphatase activity	3.53E-02
29	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.57E-02
30	GO:0004519: endonuclease activity	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	3.83E-06
2	GO:0009507: chloroplast	4.35E-05
3	GO:0009570: chloroplast stroma	9.26E-05
4	GO:0010319: stromule	2.37E-04
5	GO:0000793: condensed chromosome	4.48E-04
6	GO:0031225: anchored component of membrane	2.18E-03
7	GO:0046658: anchored component of plasma membrane	2.33E-03
8	GO:0000790: nuclear chromatin	2.84E-03
9	GO:0000145: exocyst	3.80E-03
10	GO:0005730: nucleolus	5.88E-03
11	GO:0000786: nucleosome	6.39E-03
12	GO:0022626: cytosolic ribosome	8.37E-03
13	GO:0009706: chloroplast inner membrane	1.24E-02
14	GO:0009543: chloroplast thylakoid lumen	1.46E-02
15	GO:0005623: cell	1.48E-02
16	GO:0005886: plasma membrane	1.69E-02
17	GO:0009536: plastid	2.18E-02
18	GO:0009505: plant-type cell wall	2.23E-02
19	GO:0009535: chloroplast thylakoid membrane	3.98E-02
20	GO:0043231: intracellular membrane-bounded organelle	4.12E-02