co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0015813: L-glutamate transport	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0010430: fatty acid omega-oxidation	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0007638: mechanosensory behavior	0.00E+00
8	GO:0006573: valine metabolic process	0.00E+00
9	GO:0009946: proximal/distal axis specification	0.00E+00
10	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
11	GO:0045761: regulation of adenylate cyclase activity	0.00E+00
12	GO:0007231: osmosensory signaling pathway	2.19E-05
13	GO:0019676: ammonia assimilation cycle	3.99E-05
14	GO:0033500: carbohydrate homeostasis	3.99E-05
15	GO:0006546: glycine catabolic process	3.99E-05
16	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.61E-05
17	GO:0017148: negative regulation of translation	1.29E-04
18	GO:0016117: carotenoid biosynthetic process	1.50E-04
19	GO:0007155: cell adhesion	2.16E-04
20	GO:0000066: mitochondrial ornithine transport	2.39E-04
21	GO:0019510: S-adenosylhomocysteine catabolic process	2.39E-04
22	GO:0010442: guard cell morphogenesis	2.39E-04
23	GO:0006551: leucine metabolic process	2.39E-04
24	GO:2000123: positive regulation of stomatal complex development	5.29E-04
25	GO:0010424: DNA methylation on cytosine within a CG sequence	5.29E-04
26	GO:0043039: tRNA aminoacylation	5.29E-04
27	GO:0052541: plant-type cell wall cellulose metabolic process	5.29E-04
28	GO:0010086: embryonic root morphogenesis	5.29E-04
29	GO:1903338: regulation of cell wall organization or biogenesis	5.29E-04
30	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.29E-04
31	GO:0033353: S-adenosylmethionine cycle	5.29E-04
32	GO:0007163: establishment or maintenance of cell polarity	5.29E-04
33	GO:0015712: hexose phosphate transport	5.29E-04
34	GO:0006423: cysteinyl-tRNA aminoacylation	5.29E-04
35	GO:0008154: actin polymerization or depolymerization	5.29E-04
36	GO:0045454: cell redox homeostasis	6.71E-04
37	GO:0090506: axillary shoot meristem initiation	8.60E-04
38	GO:0010338: leaf formation	8.60E-04
39	GO:0035436: triose phosphate transmembrane transport	8.60E-04
40	GO:0006696: ergosterol biosynthetic process	8.60E-04
41	GO:0006065: UDP-glucuronate biosynthetic process	8.60E-04
42	GO:0045490: pectin catabolic process	8.84E-04
43	GO:0006418: tRNA aminoacylation for protein translation	1.14E-03
44	GO:0015729: oxaloacetate transport	1.23E-03
45	GO:0071329: cellular response to sucrose stimulus	1.23E-03
46	GO:0043572: plastid fission	1.23E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.23E-03
48	GO:0006730: one-carbon metabolic process	1.36E-03
49	GO:0009294: DNA mediated transformation	1.48E-03
50	GO:0015743: malate transport	1.64E-03
51	GO:0019464: glycine decarboxylation via glycine cleavage system	1.64E-03
52	GO:0009765: photosynthesis, light harvesting	1.64E-03
53	GO:0045088: regulation of innate immune response	1.64E-03
54	GO:2000038: regulation of stomatal complex development	1.64E-03
55	GO:0015713: phosphoglycerate transport	1.64E-03
56	GO:0009902: chloroplast relocation	1.64E-03
57	GO:0009694: jasmonic acid metabolic process	1.64E-03
58	GO:0006542: glutamine biosynthetic process	1.64E-03
59	GO:0046686: response to cadmium ion	2.02E-03
60	GO:0016123: xanthophyll biosynthetic process	2.09E-03
61	GO:0010375: stomatal complex patterning	2.09E-03
62	GO:0071423: malate transmembrane transport	2.09E-03
63	GO:0016120: carotene biosynthetic process	2.09E-03
64	GO:0071554: cell wall organization or biogenesis	2.50E-03
65	GO:0006555: methionine metabolic process	2.57E-03
66	GO:0048831: regulation of shoot system development	2.57E-03
67	GO:0071555: cell wall organization	2.68E-03
68	GO:0010067: procambium histogenesis	3.09E-03
69	GO:0042026: protein refolding	3.09E-03
70	GO:0009082: branched-chain amino acid biosynthetic process	3.09E-03
71	GO:0006458: 'de novo' protein folding	3.09E-03
72	GO:0009094: L-phenylalanine biosynthetic process	3.09E-03
73	GO:0048509: regulation of meristem development	3.09E-03
74	GO:0009099: valine biosynthetic process	3.09E-03
75	GO:0048444: floral organ morphogenesis	3.09E-03
76	GO:0007267: cell-cell signaling	3.21E-03
77	GO:0008272: sulfate transport	3.64E-03
78	GO:0034968: histone lysine methylation	4.23E-03
79	GO:0008610: lipid biosynthetic process	4.23E-03
80	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.84E-03
81	GO:0048193: Golgi vesicle transport	4.84E-03
82	GO:0009097: isoleucine biosynthetic process	4.84E-03
83	GO:0006754: ATP biosynthetic process	5.48E-03
84	GO:0048589: developmental growth	5.48E-03
85	GO:0043067: regulation of programmed cell death	6.15E-03
86	GO:0035999: tetrahydrofolate interconversion	6.15E-03
87	GO:0006349: regulation of gene expression by genetic imprinting	6.15E-03
88	GO:0008356: asymmetric cell division	6.15E-03
89	GO:0006839: mitochondrial transport	6.79E-03
90	GO:0006949: syncytium formation	6.85E-03
91	GO:0010192: mucilage biosynthetic process	6.85E-03
92	GO:0006631: fatty acid metabolic process	7.08E-03
93	GO:0010216: maintenance of DNA methylation	7.58E-03
94	GO:0006816: calcium ion transport	7.58E-03
95	GO:0009773: photosynthetic electron transport in photosystem I	7.58E-03
96	GO:0018119: peptidyl-cysteine S-nitrosylation	7.58E-03
97	GO:0006820: anion transport	8.33E-03
98	GO:0009658: chloroplast organization	8.46E-03
99	GO:0042742: defense response to bacterium	9.09E-03
100	GO:0009767: photosynthetic electron transport chain	9.11E-03
101	GO:0030036: actin cytoskeleton organization	9.11E-03
102	GO:0050826: response to freezing	9.11E-03
103	GO:0009934: regulation of meristem structural organization	9.92E-03
104	GO:0010020: chloroplast fission	9.92E-03
105	GO:0019253: reductive pentose-phosphate cycle	9.92E-03
106	GO:0010223: secondary shoot formation	9.92E-03
107	GO:0009969: xyloglucan biosynthetic process	1.07E-02
108	GO:0080188: RNA-directed DNA methylation	1.07E-02
109	GO:0070588: calcium ion transmembrane transport	1.07E-02
110	GO:0006071: glycerol metabolic process	1.16E-02
111	GO:0009833: plant-type primary cell wall biogenesis	1.16E-02
112	GO:0009116: nucleoside metabolic process	1.25E-02
113	GO:0009944: polarity specification of adaxial/abaxial axis	1.25E-02
114	GO:0007010: cytoskeleton organization	1.25E-02
115	GO:0051302: regulation of cell division	1.34E-02
116	GO:0010026: trichome differentiation	1.34E-02
117	GO:0009695: jasmonic acid biosynthetic process	1.34E-02
118	GO:0007017: microtubule-based process	1.34E-02
119	GO:0061077: chaperone-mediated protein folding	1.43E-02
120	GO:0031408: oxylipin biosynthetic process	1.43E-02
121	GO:0042545: cell wall modification	1.44E-02
122	GO:0030245: cellulose catabolic process	1.53E-02
123	GO:0007005: mitochondrion organization	1.53E-02
124	GO:0080092: regulation of pollen tube growth	1.53E-02
125	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.62E-02
126	GO:0001944: vasculature development	1.62E-02
127	GO:0010089: xylem development	1.72E-02
128	GO:0006810: transport	1.76E-02
129	GO:0006629: lipid metabolic process	1.82E-02
130	GO:0000271: polysaccharide biosynthetic process	1.93E-02
131	GO:0010087: phloem or xylem histogenesis	1.93E-02
132	GO:0008360: regulation of cell shape	2.03E-02
133	GO:0045489: pectin biosynthetic process	2.03E-02
134	GO:0010197: polar nucleus fusion	2.03E-02
135	GO:0008152: metabolic process	2.06E-02
136	GO:0006814: sodium ion transport	2.14E-02
137	GO:0009790: embryo development	2.17E-02
138	GO:0007264: small GTPase mediated signal transduction	2.47E-02
139	GO:0010583: response to cyclopentenone	2.47E-02
140	GO:0010090: trichome morphogenesis	2.59E-02
141	GO:0009828: plant-type cell wall loosening	2.71E-02
142	GO:0009617: response to bacterium	3.06E-02
143	GO:0010027: thylakoid membrane organization	3.07E-02
144	GO:0009615: response to virus	3.07E-02
145	GO:0010029: regulation of seed germination	3.19E-02
146	GO:0009735: response to cytokinin	3.34E-02
147	GO:0016049: cell growth	3.58E-02
148	GO:0009817: defense response to fungus, incompatible interaction	3.71E-02
149	GO:0048481: plant ovule development	3.71E-02
150	GO:0030244: cellulose biosynthetic process	3.71E-02
151	GO:0018298: protein-chromophore linkage	3.71E-02
152	GO:0009416: response to light stimulus	3.73E-02
153	GO:0009826: unidimensional cell growth	3.81E-02
154	GO:0048767: root hair elongation	3.84E-02
155	GO:0000160: phosphorelay signal transduction system	3.84E-02
156	GO:0009813: flavonoid biosynthetic process	3.84E-02
157	GO:0009832: plant-type cell wall biogenesis	3.84E-02
158	GO:0009407: toxin catabolic process	3.97E-02
159	GO:0007568: aging	4.11E-02
160	GO:0009910: negative regulation of flower development	4.11E-02
161	GO:0009867: jasmonic acid mediated signaling pathway	4.39E-02
162	GO:0016051: carbohydrate biosynthetic process	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0030598: rRNA N-glycosylase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
4	GO:0019955: cytokine binding	0.00E+00
5	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0008179: adenylate cyclase binding	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
11	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
12	GO:0009885: transmembrane histidine kinase cytokinin receptor activity	0.00E+00
13	GO:0051920: peroxiredoxin activity	1.10E-08
14	GO:0016209: antioxidant activity	3.93E-08
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.39E-04
16	GO:0004560: alpha-L-fucosidase activity	2.39E-04
17	GO:0004013: adenosylhomocysteinase activity	2.39E-04
18	GO:0004831: tyrosine-tRNA ligase activity	2.39E-04
19	GO:0003984: acetolactate synthase activity	2.39E-04
20	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.39E-04
21	GO:0051996: squalene synthase activity	2.39E-04
22	GO:0010313: phytochrome binding	2.39E-04
23	GO:0016597: amino acid binding	3.81E-04
24	GO:0004618: phosphoglycerate kinase activity	5.29E-04
25	GO:0004047: aminomethyltransferase activity	5.29E-04
26	GO:0004817: cysteine-tRNA ligase activity	5.29E-04
27	GO:0046593: mandelonitrile lyase activity	5.29E-04
28	GO:0000064: L-ornithine transmembrane transporter activity	5.29E-04
29	GO:0015367: oxoglutarate:malate antiporter activity	5.29E-04
30	GO:0009884: cytokinin receptor activity	5.29E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.29E-04
32	GO:0070330: aromatase activity	8.60E-04
33	GO:0003913: DNA photolyase activity	8.60E-04
34	GO:0005504: fatty acid binding	8.60E-04
35	GO:0002161: aminoacyl-tRNA editing activity	8.60E-04
36	GO:0004148: dihydrolipoyl dehydrogenase activity	8.60E-04
37	GO:0005034: osmosensor activity	8.60E-04
38	GO:0071917: triose-phosphate transmembrane transporter activity	8.60E-04
39	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.60E-04
40	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.23E-03
41	GO:0048027: mRNA 5'-UTR binding	1.23E-03
42	GO:0015131: oxaloacetate transmembrane transporter activity	1.23E-03
43	GO:0030570: pectate lyase activity	1.48E-03
44	GO:0004664: prephenate dehydratase activity	1.64E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.64E-03
46	GO:0005313: L-glutamate transmembrane transporter activity	1.64E-03
47	GO:0045430: chalcone isomerase activity	1.64E-03
48	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.64E-03
49	GO:0015120: phosphoglycerate transmembrane transporter activity	1.64E-03
50	GO:0004659: prenyltransferase activity	1.64E-03
51	GO:0047769: arogenate dehydratase activity	1.64E-03
52	GO:0004601: peroxidase activity	1.70E-03
53	GO:0004812: aminoacyl-tRNA ligase activity	1.75E-03
54	GO:0008381: mechanically-gated ion channel activity	2.09E-03
55	GO:0008374: O-acyltransferase activity	2.09E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.09E-03
57	GO:0018685: alkane 1-monooxygenase activity	2.09E-03
58	GO:0004356: glutamate-ammonia ligase activity	2.09E-03
59	GO:0019901: protein kinase binding	2.34E-03
60	GO:0080030: methyl indole-3-acetate esterase activity	2.57E-03
61	GO:0016759: cellulose synthase activity	3.03E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.09E-03
63	GO:0016832: aldehyde-lyase activity	3.09E-03
64	GO:0051753: mannan synthase activity	3.09E-03
65	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.09E-03
66	GO:0005200: structural constituent of cytoskeleton	3.21E-03
67	GO:0016413: O-acetyltransferase activity	3.41E-03
68	GO:0009881: photoreceptor activity	3.64E-03
69	GO:0015140: malate transmembrane transporter activity	3.64E-03
70	GO:0019899: enzyme binding	3.64E-03
71	GO:0043295: glutathione binding	3.64E-03
72	GO:0016757: transferase activity, transferring glycosyl groups	4.00E-03
73	GO:0003843: 1,3-beta-D-glucan synthase activity	4.84E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.48E-03
75	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.48E-03
76	GO:0004672: protein kinase activity	5.71E-03
77	GO:0003746: translation elongation factor activity	5.96E-03
78	GO:0004673: protein histidine kinase activity	6.85E-03
79	GO:0044183: protein binding involved in protein folding	7.58E-03
80	GO:0047372: acylglycerol lipase activity	7.58E-03
81	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.58E-03
82	GO:0008378: galactosyltransferase activity	8.33E-03
83	GO:0000049: tRNA binding	8.33E-03
84	GO:0016788: hydrolase activity, acting on ester bonds	8.66E-03
85	GO:0000155: phosphorelay sensor kinase activity	9.11E-03
86	GO:0005262: calcium channel activity	9.11E-03
87	GO:0004565: beta-galactosidase activity	9.11E-03
88	GO:0051287: NAD binding	9.31E-03
89	GO:0003824: catalytic activity	1.07E-02
90	GO:0045330: aspartyl esterase activity	1.15E-02
91	GO:0004857: enzyme inhibitor activity	1.25E-02
92	GO:0043424: protein histidine kinase binding	1.34E-02
93	GO:0030599: pectinesterase activity	1.39E-02
94	GO:0004176: ATP-dependent peptidase activity	1.43E-02
95	GO:0033612: receptor serine/threonine kinase binding	1.43E-02
96	GO:0003779: actin binding	1.44E-02
97	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.53E-02
98	GO:0016760: cellulose synthase (UDP-forming) activity	1.62E-02
99	GO:0008810: cellulase activity	1.62E-02
100	GO:0016758: transferase activity, transferring hexosyl groups	1.81E-02
101	GO:0005102: receptor binding	1.82E-02
102	GO:0018024: histone-lysine N-methyltransferase activity	1.82E-02
103	GO:0003924: GTPase activity	1.82E-02
104	GO:0005199: structural constituent of cell wall	2.03E-02
105	GO:0005355: glucose transmembrane transporter activity	2.14E-02
106	GO:0048038: quinone binding	2.36E-02
107	GO:0004674: protein serine/threonine kinase activity	2.37E-02
108	GO:0004518: nuclease activity	2.47E-02
109	GO:0008483: transaminase activity	2.83E-02
110	GO:0008237: metallopeptidase activity	2.83E-02
111	GO:0004721: phosphoprotein phosphatase activity	3.45E-02
112	GO:0004222: metalloendopeptidase activity	3.97E-02
113	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.11E-02
114	GO:0050897: cobalt ion binding	4.11E-02
115	GO:0050660: flavin adenine dinucleotide binding	4.57E-02
116	GO:0016740: transferase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0030864: cortical actin cytoskeleton	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	6.00E-08
4	GO:0009570: chloroplast stroma	7.00E-08
5	GO:0009941: chloroplast envelope	2.62E-07
6	GO:0031225: anchored component of membrane	2.02E-06
7	GO:0048046: apoplast	1.08E-05
8	GO:0009505: plant-type cell wall	1.58E-05
9	GO:0009579: thylakoid	4.16E-05
10	GO:0009534: chloroplast thylakoid	2.33E-04
11	GO:0009344: nitrite reductase complex [NAD(P)H]	2.39E-04
12	GO:0046658: anchored component of plasma membrane	2.44E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.23E-04
14	GO:0010319: stromule	3.53E-04
15	GO:0009535: chloroplast thylakoid membrane	4.78E-04
16	GO:0005886: plasma membrane	5.26E-04
17	GO:0009543: chloroplast thylakoid lumen	5.42E-04
18	GO:0005618: cell wall	7.56E-04
19	GO:0005853: eukaryotic translation elongation factor 1 complex	8.60E-04
20	GO:0005794: Golgi apparatus	9.13E-04
21	GO:0009654: photosystem II oxygen evolving complex	1.14E-03
22	GO:0005960: glycine cleavage complex	1.23E-03
23	GO:0005576: extracellular region	1.27E-03
24	GO:0031969: chloroplast membrane	2.37E-03
25	GO:0009706: chloroplast inner membrane	2.42E-03
26	GO:0000793: condensed chromosome	2.57E-03
27	GO:0010168: ER body	2.57E-03
28	GO:0009533: chloroplast stromal thylakoid	3.64E-03
29	GO:0009536: plastid	4.01E-03
30	GO:0009539: photosystem II reaction center	4.84E-03
31	GO:0000148: 1,3-beta-D-glucan synthase complex	4.84E-03
32	GO:0045298: tubulin complex	5.48E-03
33	GO:0016021: integral component of membrane	6.04E-03
34	GO:0016324: apical plasma membrane	6.85E-03
35	GO:0031977: thylakoid lumen	7.08E-03
36	GO:0009506: plasmodesma	8.95E-03
37	GO:0030095: chloroplast photosystem II	9.92E-03
38	GO:0005875: microtubule associated complex	1.16E-02
39	GO:0000139: Golgi membrane	1.53E-02
40	GO:0010287: plastoglobule	1.76E-02
41	GO:0019898: extrinsic component of membrane	2.25E-02
42	GO:0005759: mitochondrial matrix	2.33E-02
43	GO:0005694: chromosome	2.47E-02
44	GO:0005773: vacuole	2.76E-02
45	GO:0022626: cytosolic ribosome	3.54E-02
46	GO:0009707: chloroplast outer membrane	3.71E-02
47	GO:0016020: membrane	3.75E-02
48	GO:0000325: plant-type vacuole	4.11E-02
49	GO:0005874: microtubule	4.73E-02