co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015843: methylammonium transport	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0015696: ammonium transport	3.41E-05
4	GO:0006572: tyrosine catabolic process	3.41E-05
5	GO:0010148: transpiration	3.41E-05
6	GO:0006546: glycine catabolic process	4.83E-05
7	GO:0019464: glycine decarboxylation via glycine cleavage system	4.83E-05
8	GO:0072488: ammonium transmembrane transport	4.83E-05
9	GO:0010236: plastoquinone biosynthetic process	6.40E-05
10	GO:0045962: positive regulation of development, heterochronic	8.11E-05
11	GO:0010189: vitamin E biosynthetic process	9.94E-05
12	GO:0007623: circadian rhythm	1.55E-04
13	GO:0010380: regulation of chlorophyll biosynthetic process	2.05E-04
14	GO:0006636: unsaturated fatty acid biosynthetic process	3.81E-04
15	GO:0010187: negative regulation of seed germination	4.07E-04
16	GO:0008299: isoprenoid biosynthetic process	4.35E-04
17	GO:0030433: ubiquitin-dependent ERAD pathway	4.91E-04
18	GO:0006817: phosphate ion transport	5.49E-04
19	GO:0009416: response to light stimulus	7.77E-04
20	GO:0009910: negative regulation of flower development	1.20E-03
21	GO:0009637: response to blue light	1.28E-03
22	GO:0000209: protein polyubiquitination	1.55E-03
23	GO:0008643: carbohydrate transport	1.59E-03
24	GO:0009965: leaf morphogenesis	1.63E-03
25	GO:0030154: cell differentiation	1.65E-03
26	GO:0009585: red, far-red light phototransduction	1.83E-03
27	GO:0009909: regulation of flower development	1.96E-03
28	GO:0009740: gibberellic acid mediated signaling pathway	2.23E-03
29	GO:0009624: response to nematode	2.32E-03
30	GO:0009058: biosynthetic process	2.80E-03
31	GO:0010468: regulation of gene expression	3.79E-03
32	GO:0048366: leaf development	5.05E-03
33	GO:0080167: response to karrikin	5.24E-03
34	GO:0015979: photosynthesis	5.74E-03
35	GO:0009735: response to cytokinin	9.61E-03
36	GO:0009414: response to water deprivation	1.66E-02
37	GO:0006810: transport	2.22E-02
38	GO:0055114: oxidation-reduction process	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
2	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
3	GO:0050347: trans-octaprenyltranstransferase activity	1.18E-05
4	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.18E-05
5	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	2.19E-05
6	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.41E-05
7	GO:0008519: ammonium transmembrane transporter activity	8.11E-05
8	GO:0030170: pyridoxal phosphate binding	1.23E-04
9	GO:0042802: identical protein binding	2.00E-04
10	GO:0005315: inorganic phosphate transmembrane transporter activity	3.02E-04
11	GO:0051119: sugar transmembrane transporter activity	3.54E-04
12	GO:0001085: RNA polymerase II transcription factor binding	6.38E-04
13	GO:0008483: transaminase activity	8.59E-04
14	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.20E-03
15	GO:0015293: symporter activity	1.63E-03
16	GO:0031625: ubiquitin protein ligase binding	1.96E-03
17	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.95E-03
18	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.95E-03
19	GO:0003682: chromatin binding	4.69E-03
20	GO:0061630: ubiquitin protein ligase activity	5.42E-03
21	GO:0004871: signal transducer activity	6.12E-03
22	GO:0044212: transcription regulatory region DNA binding	1.69E-02
23	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.96E-02
24	GO:0004672: protein kinase activity	2.22E-02
25	GO:0005524: ATP binding	3.34E-02
26	GO:0008270: zinc ion binding	3.79E-02
27	GO:0005515: protein binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005960: glycine cleavage complex	3.41E-05
2	GO:0005887: integral component of plasma membrane	6.02E-04
3	GO:0009941: chloroplast envelope	8.85E-04
4	GO:0005667: transcription factor complex	9.92E-04
5	GO:0009707: chloroplast outer membrane	1.10E-03
6	GO:0009536: plastid	1.85E-03
7	GO:0005834: heterotrimeric G-protein complex	2.14E-03
8	GO:0009706: chloroplast inner membrane	2.32E-03
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.81E-03
10	GO:0031969: chloroplast membrane	5.24E-03
11	GO:0009507: chloroplast	2.06E-02
12	GO:0009535: chloroplast thylakoid membrane	3.00E-02
13	GO:0048046: apoplast	4.24E-02