Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051928: positive regulation of calcium ion transport0.00E+00
2GO:0071578: zinc II ion transmembrane import0.00E+00
3GO:0032497: detection of lipopolysaccharide0.00E+00
4GO:0098721: uracil import across plasma membrane5.94E-05
5GO:0098702: adenine import across plasma membrane5.94E-05
6GO:0098710: guanine import across plasma membrane5.94E-05
7GO:0035344: hypoxanthine transport5.94E-05
8GO:1902000: homogentisate catabolic process1.44E-04
9GO:0019441: tryptophan catabolic process to kynurenine1.44E-04
10GO:0009308: amine metabolic process1.44E-04
11GO:1900459: positive regulation of brassinosteroid mediated signaling pathway1.44E-04
12GO:0009072: aromatic amino acid family metabolic process2.46E-04
13GO:0042344: indole glucosinolate catabolic process2.46E-04
14GO:0006882: cellular zinc ion homeostasis3.57E-04
15GO:0006572: tyrosine catabolic process3.57E-04
16GO:0070301: cellular response to hydrogen peroxide3.57E-04
17GO:0006809: nitric oxide biosynthetic process3.57E-04
18GO:0006635: fatty acid beta-oxidation4.00E-04
19GO:0006878: cellular copper ion homeostasis4.78E-04
20GO:0010222: stem vascular tissue pattern formation4.78E-04
21GO:0061088: regulation of sequestering of zinc ion4.78E-04
22GO:0006888: ER to Golgi vesicle-mediated transport6.71E-04
23GO:0010264: myo-inositol hexakisphosphate biosynthetic process7.40E-04
24GO:0010043: response to zinc ion8.51E-04
25GO:0048280: vesicle fusion with Golgi apparatus8.82E-04
26GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response8.82E-04
27GO:0006333: chromatin assembly or disassembly1.03E-03
28GO:0010044: response to aluminum ion1.03E-03
29GO:0009395: phospholipid catabolic process1.03E-03
30GO:0009061: anaerobic respiration1.18E-03
31GO:0006491: N-glycan processing1.18E-03
32GO:0046916: cellular transition metal ion homeostasis1.52E-03
33GO:0034765: regulation of ion transmembrane transport1.52E-03
34GO:0008202: steroid metabolic process1.69E-03
35GO:0009641: shade avoidance1.88E-03
36GO:0006896: Golgi to vacuole transport1.88E-03
37GO:0007064: mitotic sister chromatid cohesion1.88E-03
38GO:0009682: induced systemic resistance2.07E-03
39GO:0052544: defense response by callose deposition in cell wall2.07E-03
40GO:0010053: root epidermal cell differentiation2.89E-03
41GO:0009845: seed germination2.99E-03
42GO:0034976: response to endoplasmic reticulum stress3.11E-03
43GO:0007010: cytoskeleton organization3.34E-03
44GO:0009695: jasmonic acid biosynthetic process3.57E-03
45GO:0010468: regulation of gene expression4.53E-03
46GO:0009306: protein secretion4.55E-03
47GO:0042147: retrograde transport, endosome to Golgi4.81E-03
48GO:0051028: mRNA transport4.81E-03
49GO:0008360: regulation of cell shape5.34E-03
50GO:0048544: recognition of pollen5.61E-03
51GO:0006623: protein targeting to vacuole5.89E-03
52GO:0006891: intra-Golgi vesicle-mediated transport6.17E-03
53GO:0009630: gravitropism6.46E-03
54GO:0019760: glucosinolate metabolic process7.05E-03
55GO:0010286: heat acclimation7.35E-03
56GO:0006904: vesicle docking involved in exocytosis7.35E-03
57GO:0006869: lipid transport9.54E-03
58GO:0008219: cell death9.59E-03
59GO:0009817: defense response to fungus, incompatible interaction9.59E-03
60GO:0048767: root hair elongation9.93E-03
61GO:0006811: ion transport1.03E-02
62GO:0006865: amino acid transport1.10E-02
63GO:0048364: root development1.12E-02
64GO:0045087: innate immune response1.13E-02
65GO:0006099: tricarboxylic acid cycle1.17E-02
66GO:0030001: metal ion transport1.24E-02
67GO:0009640: photomorphogenesis1.35E-02
68GO:0000165: MAPK cascade1.55E-02
69GO:0006812: cation transport1.59E-02
70GO:0006813: potassium ion transport1.67E-02
71GO:0048367: shoot system development1.93E-02
72GO:0009620: response to fungus2.01E-02
73GO:0006396: RNA processing2.19E-02
74GO:0018105: peptidyl-serine phosphorylation2.19E-02
75GO:0009742: brassinosteroid mediated signaling pathway2.24E-02
76GO:0016310: phosphorylation2.54E-02
77GO:0009790: embryo development2.81E-02
78GO:0007166: cell surface receptor signaling pathway3.49E-02
79GO:0006470: protein dephosphorylation3.49E-02
80GO:0009617: response to bacterium3.60E-02
81GO:0009733: response to auxin4.33E-02
82GO:0048366: leaf development4.86E-02
RankGO TermAdjusted P value
1GO:0004334: fumarylacetoacetase activity0.00E+00
2GO:0015207: adenine transmembrane transporter activity5.94E-05
3GO:0005244: voltage-gated ion channel activity5.94E-05
4GO:0008692: 3-hydroxybutyryl-CoA epimerase activity5.94E-05
5GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity5.94E-05
6GO:0046870: cadmium ion binding5.94E-05
7GO:0015208: guanine transmembrane transporter activity5.94E-05
8GO:0015294: solute:cation symporter activity5.94E-05
9GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity5.94E-05
10GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity5.94E-05
11GO:0052595: aliphatic-amine oxidase activity5.94E-05
12GO:0032791: lead ion binding1.44E-04
13GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity1.44E-04
14GO:0004061: arylformamidase activity1.44E-04
15GO:0004165: dodecenoyl-CoA delta-isomerase activity3.57E-04
16GO:0004300: enoyl-CoA hydratase activity3.57E-04
17GO:0004108: citrate (Si)-synthase activity3.57E-04
18GO:0030527: structural constituent of chromatin3.57E-04
19GO:0015210: uracil transmembrane transporter activity4.78E-04
20GO:0016301: kinase activity5.42E-04
21GO:0015562: efflux transmembrane transporter activity7.40E-04
22GO:0019137: thioglucosidase activity7.40E-04
23GO:0004029: aldehyde dehydrogenase (NAD) activity7.40E-04
24GO:0004525: ribonuclease III activity1.18E-03
25GO:0008142: oxysterol binding1.35E-03
26GO:0005267: potassium channel activity1.35E-03
27GO:0000989: transcription factor activity, transcription factor binding1.52E-03
28GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.69E-03
29GO:0008081: phosphoric diester hydrolase activity2.47E-03
30GO:0008131: primary amine oxidase activity2.68E-03
31GO:0005385: zinc ion transmembrane transporter activity3.34E-03
32GO:0043424: protein histidine kinase binding3.57E-03
33GO:0008324: cation transmembrane transporter activity3.57E-03
34GO:0019706: protein-cysteine S-palmitoyltransferase activity3.81E-03
35GO:0004707: MAP kinase activity3.81E-03
36GO:0003756: protein disulfide isomerase activity4.55E-03
37GO:0004872: receptor activity5.89E-03
38GO:0048038: quinone binding6.17E-03
39GO:0003682: chromatin binding6.20E-03
40GO:0005200: structural constituent of cytoskeleton7.35E-03
41GO:0102483: scopolin beta-glucosidase activity8.92E-03
42GO:0005215: transporter activity9.26E-03
43GO:0050897: cobalt ion binding1.06E-02
44GO:0003993: acid phosphatase activity1.17E-02
45GO:0000149: SNARE binding1.20E-02
46GO:0008422: beta-glucosidase activity1.20E-02
47GO:0005484: SNAP receptor activity1.35E-02
48GO:0005524: ATP binding1.38E-02
49GO:0035091: phosphatidylinositol binding1.43E-02
50GO:0015171: amino acid transmembrane transporter activity1.80E-02
51GO:0031625: ubiquitin protein ligase binding1.80E-02
52GO:0008234: cysteine-type peptidase activity1.80E-02
53GO:0022857: transmembrane transporter activity2.06E-02
54GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.57E-02
55GO:0005507: copper ion binding2.72E-02
56GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.02E-02
57GO:0008270: zinc ion binding3.24E-02
58GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.76E-02
59GO:0046982: protein heterodimerization activity4.27E-02
60GO:0016788: hydrolase activity, acting on ester bonds4.38E-02
61GO:0003676: nucleic acid binding4.80E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.29E-04
2GO:0000323: lytic vacuole3.57E-04
3GO:0005773: vacuole4.13E-04
4GO:0030127: COPII vesicle coat7.40E-04
5GO:0030140: trans-Golgi network transport vesicle7.40E-04
6GO:0005802: trans-Golgi network1.14E-03
7GO:0012507: ER to Golgi transport vesicle membrane1.18E-03
8GO:0016021: integral component of membrane1.34E-03
9GO:0005774: vacuolar membrane2.74E-03
10GO:0009506: plasmodesma3.06E-03
11GO:0005777: peroxisome3.97E-03
12GO:0005770: late endosome5.34E-03
13GO:0031965: nuclear membrane5.89E-03
14GO:0005794: Golgi apparatus5.92E-03
15GO:0000785: chromatin6.46E-03
16GO:0005768: endosome7.13E-03
17GO:0000325: plant-type vacuole1.06E-02
18GO:0000786: nucleosome1.10E-02
19GO:0000139: Golgi membrane1.20E-02
20GO:0031201: SNARE complex1.28E-02
21GO:0031902: late endosome membrane1.28E-02
22GO:0005856: cytoskeleton1.47E-02
23GO:0010008: endosome membrane1.93E-02
24GO:0009706: chloroplast inner membrane2.15E-02
25GO:0005654: nucleoplasm2.47E-02
26GO:0016020: membrane2.49E-02
27GO:0005759: mitochondrial matrix2.97E-02
Gene type



Gene DE type